RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU56	YDR240C	YPR174C	Q06616	221 aa	Predicted RBP	0.62	□□□□□ -2.31
SNU56	YDR240C	SEC4	P07560	215 aa	Known RBP	0.61	□□□□□ -2.31
SNU56	YDR240C	RPL27A	P0C2H6	136 aa	Known RBP	0.61	□□□□□ -2.31
SNU56	YDR240C	RPB3	P16370	318 aa	Known RBP	0.61	□□□□□ -2.31
SNU56	YDR240C	YCR016W	P25617	290 aa	Known RBP	0.61	□□□□□ -2.31
SNU56	YDR240C	YGR050C	P53231	118 aa		0.61	□□□□□ -2.31
SNU56	YDR240C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.61	□□□□□ -2.31	not detected
SNU56	YDR240C	YRA1	Q12159	226 aa	Known RBP	0.61	□□□□□ -2.31
SNU56	YDR240C	ATP15	P21306	62 aa		0.61	□□□□□ -2.31
SNU56	YDR240C	PTM1	P32857	523 aa		0.61	□□□□□ -2.31
SNU56	YDR240C	HPA3	P39979	161 aa		0.61	□□□□□ -2.31
SNU56	YDR240C	STP22	P25604	385 aa		0.6	□□□□□ -2.31
SNU56	YDR240C	YEA4	P40004	342 aa		0.6	□□□□□ -2.31
SNU56	YDR240C	YPL073C	P40323	161 aa		0.6	□□□□□ -2.31
SNU56	YDR240C	INO80	P53115	1489 aa		0.59	□□□□□ -2.31
SNU56	YDR240C	MATALPHA1	P0CY06	175 aa		0.59	□□□□□ -2.32
SNU56	YDR240C	HMLALPHA1	P0CY07	175 aa		0.59	□□□□□ -2.32
SNU56	YDR240C	MAG1	P22134	296 aa	Known RBP	0.59	□□□□□ -2.32
SNU56	YDR240C	SPO13	P23624	291 aa		0.59	□□□□□ -2.32
SNU56	YDR240C	MSN4	P33749	630 aa		0.59	□□□□□ -2.32
SNU56	YDR240C	ODC2	Q99297	307 aa		0.59	□□□□□ -2.32
SNU56	YDR240C	VMA6	P32366	345 aa	Known RBP	0.58	□□□□□ -2.32
SNU56	YDR240C	ALG13	P53178	202 aa		0.58	□□□□□ -2.32
SNU56	YDR240C	DAD4	P69851	72 aa		0.58	□□□□□ -2.32
SNU56	YDR240C	RRN5	Q02983	363 aa		0.58	□□□□□ -2.32
SNU56	YDR240C	YFR032C-B	Q8TGU2	87 aa		0.58	□□□□□ -2.32
SNU56	YDR240C	IKI3	Q06706	1349 aa	Known RBP	0.57	□□□□□ -2.32
SNU56	YDR240C	CKS1	P20486	150 aa	Known RBP	0.57	□□□□□ -2.32
SNU56	YDR240C	DGA1	Q08650	418 aa		0.57	□□□□□ -2.32
SNU56	YDR240C	RPL24B	P24000	155 aa	Known RBP	0.56	□□□□□ -2.32
SNU56	YDR240C	UGX2	P32772	223 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	MGM101	P32787	269 aa	Known RBP	0.56	□□□□□ -2.32
SNU56	YDR240C	AIM25	P47140	327 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	UBC12	P52491	188 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	MPC3	P53311	146 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	COG5	P53951	403 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	YNG1	Q08465	219 aa		0.56	□□□□□ -2.32
SNU56	YDR240C	RPL28	P02406	149 aa	Known RBP	0.55	□□□□□ -2.32
SNU56	YDR240C	GCN3	P14741	305 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	YMR31	P19955	123 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	YCL042W	P25572	119 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	TVP23	P38962	199 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	YEL008W	P40001	126 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	YLR460C	P54007	376 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	COA3	Q3E7B2	85 aa		0.55	□□□□□ -2.32
SNU56	YDR240C	CFT1	Q06632	1357 aa	Known RBP	0.55	□□□□□ -2.32
SNU56	YDR240C	RPL25	P04456	142 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	RHO1	P06780	209 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	RPB7	P34087	171 aa		0.54	□□□□□ -2.32
SNU56	YDR240C	LSM7	P53905	115 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	YHR214C-E	Q8TGK0	99 aa		0.54	□□□□□ -2.32
SNU56	YDR240C	SEY1	Q99287	776 aa		0.54	□□□□□ -2.32
SNU56	YDR240C	THP2	O13539	261 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	PRX1	P34227	261 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	YHL018W	P38744	120 aa	Predicted RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	PDR17	P53844	350 aa		0.54	□□□□□ -2.32
SNU56	YDR240C	HNT1	Q04344	158 aa	Known RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	PRP11	Q07350	266 aa	Predicted RBP	0.54	□□□□□ -2.32
SNU56	YDR240C	HFA1	P32874	2273 aa		0.53	□□□□□ -2.32
SNU56	YDR240C	POR1	P04840	283 aa	Known RBP	0.53	□□□□□ -2.33
SNU56	YDR240C	UBC8	P28263	218 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	OCH1	P31755	480 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	MRPL15	P36523	253 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	MIC12	P38341	106 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	YER085C	P40058	173 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	YRB1	P41920	201 aa	Known RBP	0.53	□□□□□ -2.33
SNU56	YDR240C	IRC18	P47056	224 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	GET1	P53192	235 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	DIG2	Q03373	323 aa	Known RBP	0.53	□□□□□ -2.33
SNU56	YDR240C	YDR391C	Q04170	232 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	JLP1	Q12358	412 aa		0.53	□□□□□ -2.33
SNU56	YDR240C	HMF1	P40037	129 aa	Known RBP	0.52	□□□□□ -2.33
SNU56	YDR240C	MGA1	P53050	456 aa		0.52	□□□□□ -2.33
SNU56	YDR240C	PET191	Q02772	108 aa		0.52	□□□□□ -2.33
SNU56	YDR240C	YBR121C-A	P0C5L4	52 aa		0.51	□□□□□ -2.33
SNU56	YDR240C	PHO85	P17157	305 aa		0.51	□□□□□ -2.33
SNU56	YDR240C	YCR090C	P25654	182 aa	Known RBP	0.51	□□□□□ -2.33
SNU56	YDR240C	PAN3	P36102	679 aa	Predicted RBP	0.51	□□□□□ -2.33
SNU56	YDR240C	UPS3	Q04006	179 aa		0.51	□□□□□ -2.33
SNU56	YDR240C	COX8	P04039	78 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	PPA2	P28239	310 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	TRM5	P38793	499 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	RTC3	P38804	111 aa	Predicted RBP	0.5	□□□□□ -2.33
SNU56	YDR240C	ADO1	P47143	340 aa	Known RBP	0.5	□□□□□ -2.33
SNU56	YDR240C	BNA7	Q04066	261 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	DYN3	Q04949	312 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	YMR226C	Q05016	267 aa	Known RBP	0.5	□□□□□ -2.33
SNU56	YDR240C	YPR203W	Q08994	102 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	YKL183C-A	Q3E765	70 aa		0.5	□□□□□ -2.33
SNU56	YDR240C	ERG10	P41338	398 aa	Known RBP	0.49	□□□□□ -2.33
SNU56	YDR240C	ALB1	P47019	175 aa	Predicted RBP	0.49	□□□□□ -2.33
SNU56	YDR240C	THG1	P53215	237 aa	Known RBP	0.49	□□□□□ -2.33
SNU56	YDR240C	IRC23	Q08416	157 aa		0.49	□□□□□ -2.33
SNU56	YDR240C	FIT2	Q08906	153 aa		0.49	□□□□□ -2.33
SNU56	YDR240C	MDM32	Q12171	622 aa		0.49	□□□□□ -2.33
SNU56	YDR240C	NCB2	Q92317	146 aa		0.49	□□□□□ -2.33
SNU56	YDR240C	FMP49	A0A023PZB3	126 aa		0.48	□□□□□ -2.33
SNU56	YDR240C	YPK2	P18961	677 aa		0.48	□□□□□ -2.33
SNU56	YDR240C	YBR242W	P38331	238 aa		0.48	□□□□□ -2.33
SNU56	YDR240C	NOP19	P53317	196 aa	Predicted RBP	0.48	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 90.8 ms