RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W RPL27AP0C2H6 136 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W RPB3P16370 318 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W YMR31P19955 123 aa0.13□□□□□ -2.39
PRP42YDR235W YCL042WP25572 119 aa0.13□□□□□ -2.39
PRP42YDR235W TCA17P32613 152 aa0.13□□□□□ -2.39
PRP42YDR235W MGM101P32787 269 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W MIC12P38341 106 aa0.13□□□□□ -2.39
PRP42YDR235W HYR1P40581 163 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W YFH7P43591 353 aa0.13□□□□□ -2.39
PRP42YDR235W MIC26P50087 233 aa0.13□□□□□ -2.39
PRP42YDR235W YNL247WP53852 767 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W LAP3Q01532 483 aaKnown RBP RIP-Chip data0.13□□□□□ -2.39not detected
PRP42YDR235W RRN5Q02983 363 aa0.13□□□□□ -2.39
PRP42YDR235W YDR249CQ03787 373 aa0.13□□□□□ -2.39
PRP42YDR235W YOL160WQ08321 113 aa0.13□□□□□ -2.39
PRP42YDR235W CDC36P06100 191 aaPredicted RBP0.13□□□□□ -2.39
PRP42YDR235W CKS1P20486 150 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W ATP15P21306 62 aa0.13□□□□□ -2.39
PRP42YDR235W VMA6P32366 345 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W ECM4P36156 370 aa0.13□□□□□ -2.39
PRP42YDR235W YEL008WP40001 126 aa0.13□□□□□ -2.39
PRP42YDR235W YER034WP40022 185 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W YGR050CP53231 118 aa0.13□□□□□ -2.39
PRP42YDR235W YRA1Q12159 226 aaKnown RBP0.13□□□□□ -2.39
PRP42YDR235W RPL25P04456 142 aaKnown RBP0.12□□□□□ -2.39
PRP42YDR235W POR1P04840 283 aaKnown RBP0.12□□□□□ -2.39
PRP42YDR235W GCN3P14741 305 aa0.12□□□□□ -2.39
PRP42YDR235W SPO13P23624 291 aa0.12□□□□□ -2.39
PRP42YDR235W RPL24BP24000 155 aaKnown RBP0.12□□□□□ -2.39
PRP42YDR235W PPA2P28239 310 aa0.12□□□□□ -2.39
PRP42YDR235W PRX1P34227 261 aaKnown RBP0.12□□□□□ -2.39
PRP42YDR235W GET1P53192 235 aa0.12□□□□□ -2.39
PRP42YDR235W MPC3P53311 146 aa0.12□□□□□ -2.39
PRP42YDR235W YLR460CP54007 376 aa0.12□□□□□ -2.39
PRP42YDR235W YMR252CQ04814 134 aa0.12□□□□□ -2.39
PRP42YDR235W LCL2Q08045 131 aa0.12□□□□□ -2.39
PRP42YDR235W DGA1Q08650 418 aa0.12□□□□□ -2.39
PRP42YDR235W SLH1P53327 1967 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W COX8P04039 78 aa0.11□□□□□ -2.39
PRP42YDR235W SEC4P07560 215 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W YBR121C-AP0C5L4 52 aa0.11□□□□□ -2.39
PRP42YDR235W MAG1P22134 296 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W HPA3P39979 161 aa0.11□□□□□ -2.39
PRP42YDR235W YEA4P40004 342 aa0.11□□□□□ -2.39
PRP42YDR235W YER085CP40058 173 aa0.11□□□□□ -2.39
PRP42YDR235W IRC18P47056 224 aa0.11□□□□□ -2.39
PRP42YDR235W ADO1P47143 340 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W PDR17P53844 350 aa0.11□□□□□ -2.39
PRP42YDR235W LSM7P53905 115 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W COG5P53951 403 aa0.11□□□□□ -2.39
PRP42YDR235W PET191Q02772 108 aa0.11□□□□□ -2.39
PRP42YDR235W DIG2Q03373 323 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W UPS3Q04006 179 aa0.11□□□□□ -2.39
PRP42YDR235W HNT1Q04344 158 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W MDM32Q12171 622 aa0.11□□□□□ -2.39
PRP42YDR235W JLP1Q12358 412 aa0.11□□□□□ -2.39
PRP42YDR235W COA3Q3E7B2 85 aa0.11□□□□□ -2.39
PRP42YDR235W ODC2Q99297 307 aa0.11□□□□□ -2.39
PRP42YDR235W YIL177CP40434 1758 aa0.11□□□□□ -2.39
PRP42YDR235W YJL225CP40889 1758 aa0.11□□□□□ -2.39
PRP42YDR235W IKI3Q06706 1349 aaKnown RBP0.11□□□□□ -2.39
PRP42YDR235W MER1P16523 270 aa0.1□□□□□ -2.39
PRP42YDR235W SEN2P16658 377 aa0.1□□□□□ -2.39
PRP42YDR235W YCR090CP25654 182 aaKnown RBP0.1□□□□□ -2.39
PRP42YDR235W RPB7P34087 171 aa0.1□□□□□ -2.39
PRP42YDR235W PAN3P36102 679 aaPredicted RBP0.1□□□□□ -2.39
PRP42YDR235W YHL018WP38744 120 aaPredicted RBP0.1□□□□□ -2.39
PRP42YDR235W TRM5P38793 499 aa0.1□□□□□ -2.39
PRP42YDR235W RTC3P38804 111 aaPredicted RBP0.1□□□□□ -2.39
PRP42YDR235W ERG28P40030 148 aa0.1□□□□□ -2.39
PRP42YDR235W HMF1P40037 129 aaKnown RBP0.1□□□□□ -2.39
PRP42YDR235W AIM25P47140 327 aa0.1□□□□□ -2.39
PRP42YDR235W MGA1P53050 456 aa0.1□□□□□ -2.39
PRP42YDR235W DAD4P69851 72 aa0.1□□□□□ -2.39
PRP42YDR235W YMR226CQ05016 267 aaKnown RBP0.1□□□□□ -2.39
PRP42YDR235W PRP11Q07350 266 aaPredicted RBP0.1□□□□□ -2.39
PRP42YDR235W IRC23Q08416 157 aa0.1□□□□□ -2.39
PRP42YDR235W YNG1Q08465 219 aa0.1□□□□□ -2.39
PRP42YDR235W FIT2Q08906 153 aa0.1□□□□□ -2.39
PRP42YDR235W YKL183C-AQ3E765 70 aa0.1□□□□□ -2.39
PRP42YDR235W SEY1Q99287 776 aa0.1□□□□□ -2.39
PRP42YDR235W FMP49A0A023PZB3 126 aa0.09□□□□□ -2.39
PRP42YDR235W YDR157WA0A023PZE8 133 aa0.09□□□□□ -2.39
PRP42YDR235W NHP6BP11633 99 aaKnown RBP0.09□□□□□ -2.39
PRP42YDR235W PHO85P17157 305 aa0.09□□□□□ -2.39
PRP42YDR235W AHT1P29589 182 aa0.09□□□□□ -2.39
PRP42YDR235W OCH1P31755 480 aa0.09□□□□□ -2.39
PRP42YDR235W ARO7P32178 256 aa0.09□□□□□ -2.39
PRP42YDR235W SPS18P32572 300 aa0.09□□□□□ -2.39
PRP42YDR235W UGX2P32772 223 aa0.09□□□□□ -2.39
PRP42YDR235W BMH2P34730 273 aaKnown RBP0.09□□□□□ -2.39
PRP42YDR235W CBT1P36038 271 aaPredicted RBP0.09□□□□□ -2.39
PRP42YDR235W AIM2P39721 246 aa0.09□□□□□ -2.39
PRP42YDR235W YNL194CP40169 301 aa0.09□□□□□ -2.39
PRP42YDR235W YRB1P41920 201 aaKnown RBP0.09□□□□□ -2.39
PRP42YDR235W MET31Q03081 177 aa0.09□□□□□ -2.39
PRP42YDR235W YMR099CQ03161 297 aaKnown RBP0.09□□□□□ -2.39
PRP42YDR235W YMR295CQ03559 197 aa0.09□□□□□ -2.39
PRP42YDR235W RNH202Q05635 350 aa0.09□□□□□ -2.39
PRP42YDR235W GGA1Q06336 557 aa0.09□□□□□ -2.39
Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms