RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TSC2P49815 1807 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 TBC1D4O60343 1298 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 TMEM191BP0C7N4 346 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 ODC1P11926 461 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 TAF6P49848 677 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 RAB33AQ14088 237 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 SMAD2Q15796 467 aaKnown RBP19.74■□□□□ 0.75
CLN3-259ENST00000637551 SV2CQ496J9 727 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 CENPPQ6IPU0 288 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 ZNF280DQ6N043 979 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 C15orf39Q6ZRI6 1047 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 VN1R2Q8NFZ6 395 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 TMC2Q8TDI7 906 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 HASPINQ8TF76 798 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 NECTIN4Q96NY8 510 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 CGRRF1Q99675 332 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 IGFLR1Q9H665 355 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 SFXN1Q9H9B4 322 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 PDE11AQ9HCR9 933 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 CD320Q9NPF0 282 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 CACNG4Q9UBN1 327 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 FRMD4BQ9Y2L6 1034 aa19.74■□□□□ 0.75
CLN3-259ENST00000637551 PLXNA3P51805 1871 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 GOLGA8IPA6NC78 632 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 GRXCR2A6NFK2 248 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 GOLGA8JA6NMD2 632 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 PRR33A8MZF0 331 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 PSMA7O14818 248 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 IKBKBO14920 756 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 PER2O15055 1255 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 STAU1O95793 577 aaKnown RBP19.73■□□□□ 0.75
CLN3-259ENST00000637551 TNNC2P02585 160 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 HOXA9P31269 272 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 GTF2F1P35269 517 aaKnown RBP eCLIP19.73■□□□□ 0.75
CLN3-259ENST00000637551 MRE11P49959 708 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 CYP2J2P51589 502 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 TFAMQ00059 246 aaKnown RBP19.73■□□□□ 0.75
CLN3-259ENST00000637551 TPGS2Q68CL5 300 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 LILRA6Q6PI73 481 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 INTS8Q75QN2 995 aaKnown RBP19.73■□□□□ 0.75
CLN3-259ENST00000637551 ZC3H3Q8IXZ2 948 aaKnown RBP19.73■□□□□ 0.75
CLN3-259ENST00000637551 C1orf127Q8N9H9 656 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 CXorf38Q8TB03 319 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 AUTS2Q8WXX7 1259 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 DHTKD1Q96HY7 919 aaPredicted RBP19.73■□□□□ 0.75
CLN3-259ENST00000637551 ZDHHC7Q9NXF8 308 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 GDAP2Q9NXN4 497 aa19.73■□□□□ 0.75
CLN3-259ENST00000637551 CLIC2O15247 247 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 LINC01565O15544 149 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 FAM163BP0C2L3 166 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 NR2F2P24468 414 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 TKTP29401 623 aaKnown RBP19.72■□□□□ 0.75
CLN3-259ENST00000637551 CA8P35219 290 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 RBP5P82980 135 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 SPAG1Q07617 926 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 UVSSAQ2YD98 709 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 VARS2Q5ST30 1063 aaKnown RBP19.72■□□□□ 0.75
CLN3-259ENST00000637551 DPH6Q7L8W6 267 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 ADSSL1Q8N142 457 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 ZSWIM2Q8NEG5 633 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.72■□□□□ 0.75
CLN3-259ENST00000637551 PARD3BQ8TEW8 1205 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 SUSD6Q92537 303 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 RABGGTAQ92696 567 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 POP1Q99575 1024 aaKnown RBP19.72■□□□□ 0.75
CLN3-259ENST00000637551 TSG101Q99816 390 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 CLSTN3Q9BQT9 956 aa19.72■□□□□ 0.75
CLN3-259ENST00000637551 R3HCC1Q9Y3T6 440 aaKnown RBP19.72■□□□□ 0.75
CLN3-259ENST00000637551 OR6C75A6NL08 312 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 C2CD2LO14523 706 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 MBTPS2O43462 519 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 BRCC3P46736 316 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 YWHAHQ04917 246 aaPredicted RBP19.71■□□□□ 0.75
CLN3-259ENST00000637551 DLX2Q07687 328 aaPredicted RBP19.71■□□□□ 0.75
CLN3-259ENST00000637551 SMARCB1Q12824 385 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 MYO1EQ12965 1108 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 MORC3Q14149 939 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 PTCRAQ6ISU1 281 aaPredicted RBP19.71■□□□□ 0.75
CLN3-259ENST00000637551 CES5AQ6NT32 575 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 CEP57Q86XR8 500 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 TMEM86AQ8N2M4 240 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 S1PR5Q9H228 398 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 ADAM7Q9H2U9 754 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 KIAA1468Q9P260 1216 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 HSFX1Q9UBD0 423 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 FBXW11Q9UKB1 542 aa19.71■□□□□ 0.75
CLN3-259ENST00000637551 BARX2Q9UMQ3 279 aaPredicted RBP19.71■□□□□ 0.75
CLN3-259ENST00000637551 KPNA7A9QM74 516 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 SLC16A3O15427 465 aaKnown RBP19.7■□□□□ 0.74
CLN3-259ENST00000637551 CSPG5O95196 566 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 HNRNPA1P09651 372 aaKnown RBP eCLIP19.7■□□□□ 0.74
CLN3-259ENST00000637551 ATICP31939 592 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 PSMC2P35998 433 aaKnown RBP19.7■□□□□ 0.74
CLN3-259ENST00000637551 PRCPP42785 496 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 MTHFRP42898 656 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 WNT7BP56706 349 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 FKBP3Q00688 224 aaKnown RBP19.7■□□□□ 0.74
CLN3-259ENST00000637551 SYCE2Q6PIF2 218 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 ZNF461Q8TAF7 563 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 SENP8Q96LD8 212 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms