RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 PIP4P1Q86T03 277 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 TMC8Q8IU68 726 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 CCDC148Q8NFR7 591 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 CHFRQ96EP1 664 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 LRIG1Q96JA1 1093 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 DDX25Q9UHL0 483 aaKnown RBP15.31■□□□□ 0.04
SNX1-214ENST00000625244 USP20Q9Y2K6 914 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 GDAQ9Y2T3 454 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 HECTD1Q9ULT8 2610 aa15.31■□□□□ 0.04
SNX1-214ENST00000625244 CCDC194A0A1B0GVG4 234 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 H0Y626 953 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 DPYSL4O14531 572 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 TRIM16O95361 564 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 APBB3O95704 486 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 GON4LQ3T8J9 2241 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 MYO18BQ8IUG5 2567 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 DYDC2Q96IM9 177 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 FBRSL1Q9HCM7 1045 aaKnown RBP15.3■□□□□ 0.04
SNX1-214ENST00000625244 EBF1Q9UH73 591 aa15.3■□□□□ 0.04
SNX1-214ENST00000625244 AFF4Q9UHB7 1163 aaKnown RBP15.3■□□□□ 0.04
SNX1-214ENST00000625244 OTOL1A6NHN0 477 aaPredicted RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 TRDMT1O14717 391 aaKnown RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 PRAMEF12O95522 483 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 PRB1P04280 392 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 RCAN1P53805 252 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 PLCB2Q00722 1185 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 CYP4A11Q02928 519 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 EPHA7Q15375 998 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 MOXD1Q6UVY6 613 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 RNF19BQ6ZMZ0 732 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 DHX32Q7L7V1 743 aaKnown RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 RAB44Q7Z6P3 723 aaPredicted RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 PIGKQ92643 395 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 PRIMPOLQ96LW4 560 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 UROC1Q96N76 676 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 FZD8Q9H461 694 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 ZSWIM4Q9H7M6 989 aa15.29■□□□□ 0.04
SNX1-214ENST00000625244 PRMT7Q9NVM4 692 aaPredicted RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 KIF26AQ9ULI4 1882 aaPredicted RBP15.29■□□□□ 0.04
SNX1-214ENST00000625244 CCDC196A0A1B0GTZ2 297 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 H7C4K7 107 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 SYN3O14994 580 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 N4BP3O15049 544 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 BCKDHBP21953 392 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 NLRP5P59047 1200 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 SOX4Q06945 474 aaPredicted RBP15.28■□□□□ 0.04
SNX1-214ENST00000625244 SEMA3BQ13214 749 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 CTXN3Q4LDR2 81 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 TRIM61Q5EBN2 209 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 RPLP0P6Q8NHW5 317 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 BPIFB1Q8TDL5 484 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 POLR3FQ9H1D9 316 aaPredicted RBP15.28■□□□□ 0.04
SNX1-214ENST00000625244 DNAJC25Q9H1X3 360 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 CCDC86Q9H6F5 360 aaKnown RBP15.28■□□□□ 0.04
SNX1-214ENST00000625244 KCNMB3Q9NPA1 279 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 OBP2AQ9NY56 170 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 EVLQ9UI08 416 aaPredicted RBP15.28■□□□□ 0.04
SNX1-214ENST00000625244 RAXQ9Y2V3 346 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 YIPF1Q9Y548 306 aa15.28■□□□□ 0.04
SNX1-214ENST00000625244 ARID2Q68CP9 1835 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 URB1O60287 2271 aaKnown RBP15.27■□□□□ 0.04
SNX1-214ENST00000625244 LRRIQ4A6NIV6 560 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 DGAT1O75907 488 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 VNN2O95498 520 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 EDN1P05305 212 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 RDXP35241 583 aaKnown RBP15.27■□□□□ 0.04
SNX1-214ENST00000625244 DHPSP49366 369 aaPredicted RBP15.27■□□□□ 0.04
SNX1-214ENST00000625244 DGKEP52429 567 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 AKAP17AQ02040 695 aaKnown RBP15.27■□□□□ 0.04
SNX1-214ENST00000625244 C19orf57Q0VDD7 668 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 LMAN2Q12907 356 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 DMC1Q14565 340 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 FAM187BQ17R55 369 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 TMEM132AQ24JP5 1023 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 EEF1DP3Q658K8 133 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 NAIF1Q69YI7 327 aaPredicted RBP15.27■□□□□ 0.04
SNX1-214ENST00000625244 GAREM2Q75VX8 874 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 SYT13Q7L8C5 426 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 TPH2Q8IWU9 490 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 FAM20AQ96MK3 541 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 C22orf23Q9BZE7 217 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 GPRC5CQ9NQ84 441 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 HPS4Q9NQG7 708 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 GKN1Q9NS71 199 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 MAFFQ9ULX9 164 aa15.27■□□□□ 0.04
SNX1-214ENST00000625244 THADAQ6YHU6 1953 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 UPK3BL1B0FP48 263 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 UPK3BL2E5RIL1 263 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 M0R2N6 131 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 SLITRK3O94933 977 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 ENGP17813 658 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 U2AF2P26368 475 aaKnown RBP eCLIP15.26■□□□□ 0.03
SNX1-214ENST00000625244 MCM2P49736 904 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 PRPF4BQ13523 1007 aaKnown RBP15.26■□□□□ 0.03
SNX1-214ENST00000625244 PTPAQ15257 358 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 USP39Q53GS9 565 aaKnown RBP15.26■□□□□ 0.03
SNX1-214ENST00000625244 GPR158Q5T848 1215 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 CDCA2Q69YH5 1023 aaPredicted RBP15.26■□□□□ 0.03
SNX1-214ENST00000625244 NCAPH2Q6IBW4 605 aa15.26■□□□□ 0.03
SNX1-214ENST00000625244 C11orf74Q86VG3 221 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms