RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SYTL1Q8IYJ3 562 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 PRR18Q8N4B5 295 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 NEDD1Q8NHV4 660 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 GTF3C6Q969F1 213 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SHISA4Q96DD7 197 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 BORCS6Q96GS4 357 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 C1orf159Q96HA4 380 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 DHRS1Q96LJ7 313 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 WRNIP1Q96S55 665 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 NCAPGQ9BPX3 1015 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SLX1AQ9BQ83 275 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 UBAC1Q9BSL1 405 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 EMILIN2Q9BXX0 1053 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 ZNF341Q9BYN7 854 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 TXLNGYQ9BZA5 131 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 TRPV4Q9HBA0 871 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 H2AFY2Q9P0M6 372 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 STX8Q9UNK0 236 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 CORO2BQ9UQ03 480 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 GREB1LQ9C091 1923 aaPredicted RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 H0YGN5 161 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 MPHOSPH10O00566 681 aaKnown RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 AQP7O14520 342 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 TGM5O43548 720 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 PFKFB2O60825 505 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 ADH1CP00326 375 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 XBP1P17861 261 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 PLCG1P19174 1290 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 CTGFP29279 349 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 ATP6V1E1P36543 226 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 PTGIRP43119 386 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 NOVP48745 357 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 TROAPQ12815 778 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 NR5A1Q13285 461 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 MOGSQ13724 837 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 CERKLQ49MI3 558 aaPredicted RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 GNASQ5JWF2 1037 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 NOL9Q5SY16 702 aaKnown RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 NFXL1Q6ZNB6 911 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 ASAP3Q8TDY4 903 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 NANOS1Q8WY41 292 aaKnown RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 ZKSCAN4Q969J2 545 aaPredicted RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 JAKMIP2Q96AA8 810 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 ZNF274Q96GC6 653 aaPredicted RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 SLC6A18Q96N87 628 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 TMEM47Q9BQJ4 181 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 SORBS1Q9BX66 1292 aaKnown RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 CLEC4MQ9H2X3 399 aaPredicted RBP7.52□□□□□ -1.21
VPS53-217ENST00000575100 CABP5Q9NP86 173 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 TCP11L1Q9NUJ3 509 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 IRAK4Q9NWZ3 460 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 SRRDQ9UH36 339 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 PLIN4Q96Q06 1357 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 ALPK3Q96L96 1907 aa7.52□□□□□ -1.21
VPS53-217ENST00000575100 C17orf113A0A1B0GUU1 675 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CAPN8A6NHC0 703 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 URI1O94763 535 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 GH2P01242 217 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 HNRNPLP14866 589 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-217ENST00000575100 C5AR1P21730 350 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TARSP26639 723 aaKnown RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 SATB1Q01826 763 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ZNF543Q08ER8 600 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 FOXO1Q12778 655 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TRIM32Q13049 653 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 POLD3Q15054 466 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 WIPI1Q5MNZ9 446 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 JMJD6Q6NYC1 403 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 KDELC2Q7Z4H8 507 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 GALNTL5Q7Z4T8 443 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TRIM59Q8IWR1 403 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CHST14Q8NCH0 376 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 SLF1Q9BQI6 1058 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 GRIP2Q9C0E4 1043 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 GHITMQ9H3K2 345 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CNTD2Q9H8S5 307 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ZWILCHQ9H900 591 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ZNF287Q9HBT7 754 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 MTMR4Q9NYA4 1195 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 EMC9Q9Y3B6 208 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 RRP15Q9Y3B9 282 aaKnown RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 TRIOBPQ9H2D6 2365 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CEP290O15078 2479 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 A0A1W2PRG0 241 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 ERICH2A1L162 156 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CCDC69A6NI79 296 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 FOXN3O00409 490 aaPredicted RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 ZBTB43O43298 467 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 MGEA5O60502 916 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 APOA4P06727 396 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 TSHRP16473 764 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 CAPN2P17655 700 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 HOXD10P28358 340 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 SOX18P35713 384 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 NOP2P46087 812 aaKnown RBP7.51□□□□□ -1.21
VPS53-217ENST00000575100 UBXN2AP68543 259 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 PLCL1Q15111 1095 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 FBXO47Q5MNV8 452 aa7.51□□□□□ -1.21
VPS53-217ENST00000575100 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS53-217ENST00000575100 NSUN7Q8NE18 718 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms