RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GOLGA8JA6NMD2 632 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 LMNAP02545 664 aaKnown RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 CNGA1P29973 690 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 ADSSP30520 456 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 RNASELQ05823 741 aaKnown RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 DMP1Q13316 513 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 TRIP13Q15645 432 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 ZC3H12AQ5D1E8 599 aaKnown RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 MCF2L2Q86YR7 1114 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 ANKLE1Q8NAG6 615 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 TMEM161BQ8NDZ6 487 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 CCDC127Q96BQ5 260 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 SMC6Q96SB8 1091 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 MYLK2Q9H1R3 596 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 TBK1Q9UHD2 729 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 PHTF1Q9UMS5 762 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 R3HDM2Q9Y2K5 976 aaKnown RBP17.26■□□□□ 0.35
SHMT2-232ENST00000557487 LRRC42Q9Y546 428 aa17.26■□□□□ 0.35
SHMT2-232ENST00000557487 DNALI1O14645 258 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 KIF3CO14782 793 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 ATP2A1O14983 1001 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 EDF1O60869 148 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 SMNDC1O75940 238 aaKnown RBP eCLIP17.25■□□□□ 0.356e-6■□□□□ 8.8
SHMT2-232ENST00000557487 NEBLO76041 1014 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 GARTP22102 1010 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 CALB2P22676 271 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 PAX7P23759 505 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 SFNP31947 248 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 PSMC5P62195 406 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 PCNX4Q63HM2 1172 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 SV2AQ7L0J3 742 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 MON1BQ7L1V2 547 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 ENDOVQ8N8Q3 282 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 RBM41Q96IZ5 413 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 NTPCRQ9BSD7 190 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 TUBB6Q9BUF5 446 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 KIAA1586Q9HCI6 787 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 SAR1AQ9NR31 198 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 RNF181Q9P0P0 153 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 UMODL1Q5DID0 1318 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 SBF1O95248 1867 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 DDX39AO00148 427 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 PPP1R12AO14974 1030 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 MCL1Q07820 350 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 MORF4L2Q15014 288 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 CCDC142Q17RM4 750 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 TKFCQ3LXA3 575 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 GSTA5Q7RTV2 222 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 RCOR2Q8IZ40 523 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 ZSWIM2Q8NEG5 633 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 RDM1Q8NG50 284 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 LRRC8CQ8TDW0 803 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 ERP27Q96DN0 273 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 HERPUD2Q9BSE4 406 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 VPS33BQ9H267 617 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 TRABDQ9H4I3 376 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 DBNDD1Q9H9R9 158 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 DNAJC17Q9NVM6 304 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 CYP39A1Q9NYL5 469 aa17.25■□□□□ 0.35
SHMT2-232ENST00000557487 DRG1Q9Y295 367 aaKnown RBP17.25■□□□□ 0.35
SHMT2-232ENST00000557487 A8MUI8 341 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 H0YCG3 227 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 ZBED4O75132 1171 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 FDX1P10109 184 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 GNAZP19086 355 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 ECE1P42892 770 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 EAPPQ56P03 285 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-232ENST00000557487 SLC45A4Q5BKX6 768 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 CAPRIN2Q6IMN6 1127 aaKnown RBP17.24■□□□□ 0.35
SHMT2-232ENST00000557487 GPD1LQ8N335 351 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 STK32AQ8WU08 396 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 NAF1Q96HR8 494 aaKnown RBP17.24■□□□□ 0.35
SHMT2-232ENST00000557487 C9orf72Q96LT7 481 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 KCNG1Q9UIX4 513 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 PCDHAC2Q9Y5I4 1007 aa17.24■□□□□ 0.35
SHMT2-232ENST00000557487 ICAM1P05362 532 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 PTPN7P35236 360 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TAF11Q15544 211 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 P3H1Q32P28 736 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 WDR44Q5JSH3 913 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 LRRC38Q5VT99 294 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 SMYD5Q6GMV2 418 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 C15orf39Q6ZRI6 1047 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 PHF13Q86YI8 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 UTP4Q969X6 686 aaKnown RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 SAAL1Q96ER3 474 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TLE6Q9H808 572 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 SAYSD1Q9NPB0 183 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TMOD2Q9NZR1 351 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TCEAL9Q9UHQ7 104 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 LNPEPQ9UIQ6 1025 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 TRIM33Q9UPN9 1127 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 SHOC2Q9UQ13 582 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 CHKBQ9Y259 395 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ASTN2O75129 1339 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ZNFX1Q9P2E3 1918 aaKnown RBP17.23■□□□□ 0.35
SHMT2-232ENST00000557487 CCDC189A1A4V9 331 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 ALOX15BO15296 676 aa17.23■□□□□ 0.35
SHMT2-232ENST00000557487 LIASO43766 372 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms