RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PCMTD1Q96MG8 357 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 ERGIC2Q96RQ1 377 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 JPH2Q9BR39 696 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 FAM126AQ9BYI3 521 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 ARRDC1-AS1Q9H2J1 176 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 ST6GALNAC4Q9H4F1 302 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 JPH1Q9HDC5 661 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 RRAGDQ9NQL2 400 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 PADI3Q9ULW8 664 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 MAPK8IP1Q9UQF2 711 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 PCDHB7Q9Y5E2 793 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 NUMBLQ9Y6R0 609 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 PTPN13Q12923 2485 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 ANHXE9PGG2 379 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 KIAA0391O15091 583 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 AXIN1O15169 862 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 DHX15O43143 795 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 GGPS1O95749 300 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 EPB41P11171 864 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 LAG3P18627 525 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TRIM21P19474 475 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 YWHABP31946 246 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 PBX1P40424 430 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 MRPS9P82933 396 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 CYP4A11Q02928 519 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 ENPEPQ07075 957 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 CETN1Q12798 172 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 ADAM9Q13443 819 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 HTR4Q13639 388 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TUBB2AQ13885 445 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 CTTNQ14247 550 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 PPP2R5AQ15172 486 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 MLF2Q15773 248 aaPredicted RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 ECM1Q16610 540 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 SLC44A4Q53GD3 710 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 ZBTB41Q5SVQ8 909 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 SH3PXD2AQ5TCZ1 1133 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 SMYD5Q6GMV2 418 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 PADI6Q6TGC4 694 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 CYP26C1Q6V0L0 522 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 KCNK18Q7Z418 384 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TRIM50Q86XT4 487 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 C12orf50Q8NA57 414 aaPredicted RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 CRELD1Q96HD1 420 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 MED15Q96RN5 788 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 DUSP9Q99956 384 aaKnown RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 REEP2Q9BRK0 252 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TUBB2BQ9BVA1 445 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 OSBPL6Q9BZF3 934 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 VPS16Q9H269 839 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 KCNF1Q9H3M0 494 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 NDST4Q9H3R1 872 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 SFXN1Q9H9B4 322 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 NRBP2Q9NSY0 501 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TAB2Q9NYJ8 693 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 RGL1Q9NZL6 768 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 TBC1D7Q9P0N9 293 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 SLC9A2Q9UBY0 812 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 ARMCX3Q9UH62 379 aaPredicted RBP9.08□□□□□ -0.96
CHD4-208ENST00000540960 CAPN11Q9UMQ6 739 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 FRMD4BQ9Y2L6 1034 aa9.08□□□□□ -0.96
CHD4-208ENST00000540960 NRCAMQ92823 1304 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 SPAG17Q6Q759 2223 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 SHISA7A6NL88 538 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 CHURC1-FNTBB4DL54 471 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 EML1O00423 815 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 MAPK13O15264 365 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 GAS2O43903 313 aaKnown RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 FOXD2O60548 495 aaPredicted RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 MFAP3LO75121 409 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 DGAT1O75907 488 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 GCNT3O95395 438 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 CCDC175P0C221 793 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 CCDC172P0C7W6 258 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZNF806P0C7X5 589 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 MYBP10242 640 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 PLS3P13797 630 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 PSMC2P35998 433 aaKnown RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 RFC5P40937 340 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 FNTBP49356 437 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 SLC26A2P50443 739 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 TUBB4BP68371 445 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 KRT83P78385 493 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZBED6P86452 979 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 CCZ1BP86790 482 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 CCZ1P86791 482 aaPredicted RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 CDK17Q00537 523 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 KRT17Q04695 432 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZCWPW2Q504Y3 356 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ARSHQ5FYA8 562 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 XKR3Q5GH77 459 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ODR4Q5SWX8 454 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ARMCX5Q6P1M9 558 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 EPM2AIP1Q7L775 607 aaPredicted RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 APTXQ7Z2E3 356 aaKnown RBP9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZNF605Q86T29 641 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 SLC9A9Q8IVB4 645 aa9.07□□□□□ -0.96
CHD4-208ENST00000540960 ZC3H3Q8IXZ2 948 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms