RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ORC3Q9UBD5 711 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-209ENST00000539982 CCDC163A0A0D9SF12 145 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 A0A1W2PRU2 124 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 WNT7AO00755 349 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 PFKFB2O60825 505 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 EPN2O95208 641 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 KCNK5O95279 499 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 CTDNEP1O95476 244 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 RPA1P27694 616 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 HOXC13P31276 330 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 CTHP32929 405 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 RAP1GAPP47736 663 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 OSTNP61366 133 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 CCINQ13939 588 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 CCDC6Q16204 474 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 ARHGAP29Q52LW3 1261 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 ZNF280DQ6N043 979 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 ARID3BQ8IVW6 561 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 CEP120Q8N960 986 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 FAM200AQ8TCP9 573 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 GAB3Q8WWW8 586 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 DDX12PQ92771 950 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 KIFAP3Q92845 792 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 ACAP3Q96P50 834 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 LSM14BQ9BX40 385 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 TMEM60Q9H2L4 133 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 POLD4Q9HCU8 107 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 PTPRHQ9HD43 1115 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 SH2B1Q9NRF2 756 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 GTSE1Q9NYZ3 720 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 PDCD11Q14690 1871 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 ATRXP46100 2492 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 FAM208BQ5VWN6 2430 aa12.73□□□□□ -0.37
CLSTN3-209ENST00000539982 GREB1Q4ZG55 1949 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 SDK1Q7Z5N4 2213 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 BTBD18B2RXH4 712 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 RPP40O75818 363 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 FDPSP14324 419 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 CPB1P15086 417 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 MARCKSP29966 332 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 MCM4P33991 863 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 PON2Q15165 354 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 PLA2G2CQ5R387 149 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 HAUS6Q7Z4H7 955 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 GPIHBP1Q8IV16 184 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 BEST2Q8NFU1 509 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 TTC8Q8TAM2 541 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 ERMNQ8TAM6 284 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 C18orf25Q96B23 403 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 TBC1D32Q96NH3 1257 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 LRRC3BQ96PB8 259 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 ACO2Q99798 780 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 CDT1Q9H211 546 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 OBP2AQ9NY56 170 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 CNTN3Q9P232 1028 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 PCDHB8Q9UN66 801 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 YIPF1Q9Y548 306 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 PCDHGA5Q9Y5G8 931 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 FRYQ5TBA9 3013 aa12.72□□□□□ -0.37
CLSTN3-209ENST00000539982 DPYSL4O14531 572 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 EXTL3O43909 919 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 OAZ2O95190 189 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 EPHB3P54753 998 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 PLD1Q13393 1074 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 COL9A2Q14055 689 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 ZNF568Q3ZCX4 644 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 KBTBD6Q86V97 674 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 TMC8Q8IU68 726 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 ZFYVE19Q96K21 471 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 ZC3H10Q96K80 434 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 OXCT2Q9BYC2 517 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 TMEM134Q9H6X4 195 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 TPCN1Q9ULQ1 816 aa12.71□□□□□ -0.37
CLSTN3-209ENST00000539982 ATG13O75143 517 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 AKAP3O75969 853 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 VNN2O95498 520 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 FGF19O95750 216 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 CCDC192P0DO97 292 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 MCF2P10911 925 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 MUTP22033 750 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 WEE1P30291 646 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 ALDH1A3P47895 512 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 PXNP49023 591 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 PLCB2Q00722 1185 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 YWHAHQ04917 246 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 DUSP4Q13115 394 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 PTPAQ15257 358 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 STXBP5Q5T5C0 1151 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 ERICH6BQ5W0A0 696 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 DIS3L2Q8IYB7 885 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 TCHPQ9BT92 498 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 MKNK1Q9BUB5 465 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 MRPL4Q9BYD3 311 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 DNAJC25Q9H1X3 360 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 VPS45Q9NRW7 570 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 ASB3Q9Y575 518 aa12.7□□□□□ -0.38
CLSTN3-209ENST00000539982 PHLPP2Q6ZVD8 1323 aa12.69□□□□□ -0.38
CLSTN3-209ENST00000539982 CCDC169A6NNP5 214 aa12.69□□□□□ -0.38
CLSTN3-209ENST00000539982 C1QTNF9BB2RNN3 333 aa12.69□□□□□ -0.38
CLSTN3-209ENST00000539982 M0QZQ0 153 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms