RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 USP10Q14694 798 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 GRM4Q14833 912 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 IFNEQ86WN2 208 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 CALML6Q8TD86 181 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 DTX3LQ8TDB6 740 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 TUBGCP3Q96CW5 907 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 RBM15Q96T37 977 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ZCCHC17Q9NP64 241 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 GID8Q9NWU2 228 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 NSMCE4AQ9NXX6 385 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 PCDHA10Q9Y5I2 948 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 COL15A1P39059 1388 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 EIF4E1BA6NMX2 242 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 APRTP07741 180 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 FGFR4P22455 802 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ST8SIA6P61647 398 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ADCK2Q7Z695 626 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 SHCBP1Q8NEM2 672 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 RFWD2Q8NHY2 731 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 OSBPL10Q9BXB5 764 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 PSMC3IPQ9P2W1 217 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 LSM7Q9UK45 103 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 MYO1GB0I1T2 1018 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 HMGB3O15347 200 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ALDH1A1P00352 501 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 TRIP10Q15642 601 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 LRIG3Q6UXM1 1119 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ANKMY2Q8IV38 441 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ZNF507Q8TCN5 953 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 PTPRN2Q92932 1015 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 WRNIP1Q96S55 665 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 TIPINQ9BVW5 301 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 EPN3Q9H201 632 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ACAD9Q9H845 621 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 VIPAS39Q9H9C1 493 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 BARHL2Q9NY43 387 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 ZC3H4Q9UPT8 1303 aaKnown RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 CFAP99D6REC4 459 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 H7C1W4 665 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SERPIND1P05546 499 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SLC9A1P19634 815 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SERPINB1P30740 379 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SPRP35270 261 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-209ENST00000537178 KCNB1Q14721 858 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 NKX1-1Q15270 411 aaPredicted RBP11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SMAD1Q15797 465 aaKnown RBP11.15□□□□□ -0.63
CLIP1-209ENST00000537178 YAF2Q8IY57 180 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SH3GL2Q99962 352 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 KCND1Q9NSA2 647 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 SNX12Q9UMY4 172 aa11.15□□□□□ -0.63
CLIP1-209ENST00000537178 AKT1P31749 480 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 TMED10P49755 219 aaKnown RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 CYLC2Q14093 348 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 SRPK1Q96SB4 655 aaKnown RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 GJB4Q9NTQ9 266 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 SEPT3Q9UH03 358 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 PKP3Q9Y446 797 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 EVPLLA8MZ36 301 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 GOLGA8RI6L899 631 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 TEX33O43247 280 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 RASSF9O75901 435 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 EYA4O95677 639 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ATP1A1P05023 1023 aaKnown RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 APOA4P06727 396 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 HOXD10P28358 340 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 CCDC142Q17RM4 750 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 KIZQ2M2Z5 673 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 WDR72Q3MJ13 1102 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 WLSQ5T9L3 541 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 KCNV1Q6PIU1 500 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 SLC30A9Q6PML9 568 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 DIS3LQ8TF46 1054 aaKnown RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 RBBP8Q99708 897 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 C10orf88Q9H8K7 445 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 RAB6BQ9NRW1 208 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 RIC8BQ9NVN3 520 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 FAM47DPA6NHR8 397 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 PDGFRAP16234 1089 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 CDC42EP1Q00587 391 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 TOB2Q14106 344 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 QRICH1Q2TAL8 776 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 TBC1D10CQ8IV04 446 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 CYGBQ8WWM9 190 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ARHGEF26Q96DR7 871 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 SPATA33Q96N06 139 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 RGL1Q9NZL6 768 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 KRT75O95678 551 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 CYP2D6P10635 497 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ARL4DP49703 201 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ZNF200P98182 395 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 TP53BP2Q13625 1128 aa11.14□□□□□ -0.63
CLIP1-209ENST00000537178 MTO1Q9Y2Z2 717 aaKnown RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 ZBTB12Q9Y330 459 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-209ENST00000537178 F5H6K3 240 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 NFIBO00712 420 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 LCP1P13796 627 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 KCNA3P22001 575 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 HPCAP84074 193 aa11.13□□□□□ -0.63
CLIP1-209ENST00000537178 KLRC3Q07444 240 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms