RNA–Protein interactions for RNA: ENST00000536301.1

CHD4-205, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 3

Gene CHD4, Length 107 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-205	ENST00000536301	ANKS3	Q6ZW76	656 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PDZD3	Q86UT5	571 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	RALGPS2	Q86X27	583 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	POTED	Q86YR6	584 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ARID3B	Q8IVW6	561 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	TPH2	Q8IWU9	490 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	YAF2	Q8IY57	180 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	TCEAL8	Q8IYN2	117 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	BLID	Q8IZY5	108 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	TTC9B	Q8N6N2	239 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	CCDC148	Q8NFR7	591 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	BICD2	Q8TD16	824 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PIGO	Q8TEQ8	1089 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	CCDC12	Q8WUD4	166 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	EZH1	Q92800	747 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	BRF1	Q92994	677 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ZC3H10	Q96K80	434 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	ZMAT2	Q96NC0	199 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	POLR3C	Q9BUI4	534 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	KIFC3	Q9BVG8	833 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	RNF26	Q9BY78	433 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	FZD8	Q9H461	694 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	SLITRK6	Q9H5Y7	841 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	C8orf33	Q9H7E9	229 aa	Predicted RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	HPS4	Q9NQG7	708 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	GJB4	Q9NTQ9	266 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PCDHA4	Q9UN74	947 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	KCNJ14	Q9UNX9	436 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	GPSM3	Q9Y4H4	160 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	YIPF1	Q9Y548	306 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PPME1	Q9Y570	386 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	OBSL1	O75147	1896 aa		5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	HELZ	P42694	1942 aa	Known RBP	5.76	□□□□□ -1.49
CHD4-205	ENST00000536301	PTPRB	P23467	1997 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	WNT7A	O00755	349 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	RNF40	O75150	1001 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CEACAM1	P13688	526 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	ARSA	P15289	507 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	IFNAR1	P17181	557 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CSRP1	P21291	193 aa	Known RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	RARRES1	P49788	294 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	RCAN1	P53805	252 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	MLLT6	P55198	1093 aa	Predicted RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	FGD1	P98174	961 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CYP4F8	P98187	520 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	POU5F1B	Q06416	359 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	TMEM196	Q5HYL7	178 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	NT5DC1	Q5TFE4	455 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CDCA2	Q69YH5	1023 aa	Predicted RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	TRIM68	Q6AZZ1	485 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	MOXD1	Q6UVY6	613 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	GAREM2	Q75VX8	874 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	RTL10	Q7L3V2	364 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	PROSER1	Q86XN7	944 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CHCHD4	Q8N4Q1	142 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	ADAM32	Q8TC27	787 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	OXER1	Q8TDS5	423 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	C18orf25	Q96B23	403 aa	Predicted RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	MSANTD3	Q96H12	275 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CRELD1	Q96HD1	420 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	ZNF512	Q96ME7	567 aa	Predicted RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	PGLYRP2	Q96PD5	576 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	EIF2AK1	Q9BQI3	630 aa	Known RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	LARP6	Q9BRS8	491 aa	Known RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	NFKBIZ	Q9BYH8	718 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	TPSD1	Q9BZJ3	242 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	CCDC113	Q9H0I3	377 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	ZSWIM4	Q9H7M6	989 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	TMEM9B	Q9NQ34	198 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	ASAH2	Q9NR71	780 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	MSRB2	Q9Y3D2	182 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	NEUROG3	Q9Y4Z2	214 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	TIMM13	Q9Y5L4	95 aa	Predicted RBP	5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	KNTC1	P50748	2209 aa		5.75	□□□□□ -1.49
CHD4-205	ENST00000536301	SCN1A	P35498	2009 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	CABIN1	Q9Y6J0	2220 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	PTPRQ	Q9UMZ3	2332 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	CCDC163	A0A0D9SF12	145 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	SMIM28	A0A1B0GU29	152 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	PODXL	O00592	558 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	N4BP3	O15049	544 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	DKC1	O60832	514 aa	Known RBP eCLIP	5.74	□□□□□ -1.49	1e-323	■■■□□ 16.6
CHD4-205	ENST00000536301	AKAP3	O75969	853 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	PRB1	P04280	392 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	HNRNPL	P14866	589 aa	Known RBP eCLIP	5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	GBP1	P32455	592 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	MAPK8	P45983	427 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	OSTN	P61366	133 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	AKAP17A	Q02040	695 aa	Known RBP	5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	NCBP1	Q09161	790 aa	Known RBP	5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	SCAP	Q12770	1279 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	FAM187B	Q17R55	369 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	CTXN3	Q4LDR2	81 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	GPR158	Q5T848	1215 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	DAB2IP	Q5VWQ8	1189 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	PMS2CL	Q68D20	193 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	IQCE	Q6IPM2	695 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	OTUD6A	Q7L8S5	288 aa		5.74	□□□□□ -1.49
CHD4-205	ENST00000536301	FRMD1	Q8N878	549 aa		5.74	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms