RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 ANKRD62A6NC57 917 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 HSPA8P11142 646 aaKnown RBP6.06□□□□□ -1.44
VPS50-214ENST00000477935 CLUL1Q15846 466 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 ABCB5Q2M3G0 1257 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 PRAMEF14Q5SWL7 426 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 OR7D4Q8NG98 312 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 OR52N2Q8NGI0 321 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 CACTINQ8WUQ7 758 aaKnown RBP6.06□□□□□ -1.44
VPS50-214ENST00000477935 SSH1Q8WYL5 1049 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 GCC1Q96CN9 775 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 CEP95Q96GE4 821 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 GPATCH3Q96I76 525 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 ADI1Q9BV57 179 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 CPEB1Q9BZB8 566 aaKnown RBP6.06□□□□□ -1.44
VPS50-214ENST00000477935 BCO1Q9HAY6 547 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 HDAC5Q9UQL6 1122 aa6.06□□□□□ -1.44
VPS50-214ENST00000477935 CPSF1Q10570 1443 aaKnown RBP6.06□□□□□ -1.44
VPS50-214ENST00000477935 BTAF1O14981 1849 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 GOLGA6L6A8MZA4 724 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 GABRDO14764 452 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 MYBL2P10244 700 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 C6P13671 934 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 HSP90B1P14625 803 aaKnown RBP6.05□□□□□ -1.44
VPS50-214ENST00000477935 DGCR2P98153 550 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 ZXDAP98168 799 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 PTH1RQ03431 593 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 METTL24Q5JXM2 366 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 NAIF1Q69YI7 327 aaPredicted RBP6.05□□□□□ -1.44
VPS50-214ENST00000477935 REPS2Q8NFH8 660 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 FAXDC2Q96IV6 333 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 PARPBPQ9NWS1 579 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 MKS1Q9NXB0 559 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 KIAA1210Q9ULL0 1709 aa6.05□□□□□ -1.44
VPS50-214ENST00000477935 B5MCH6 92 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 MMP10P09238 476 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 GSPT1P15170 499 aaKnown RBP6.04□□□□□ -1.44
VPS50-214ENST00000477935 DPEP1P16444 411 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 TACR2P21452 398 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 PTPN7P35236 360 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 MGAT2Q10469 447 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 TOB2Q14106 344 aaPredicted RBP6.04□□□□□ -1.44
VPS50-214ENST00000477935 NOMO1Q15155 1222 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 ANKS6Q68DC2 871 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 GPRIN1Q7Z2K8 1008 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 TRMT2AQ8IZ69 625 aaKnown RBP6.04□□□□□ -1.44
VPS50-214ENST00000477935 Q8N1X5 172 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 JADE3Q92613 823 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 UHRF1Q96T88 793 aaPredicted RBP6.04□□□□□ -1.44
VPS50-214ENST00000477935 BRINP2Q9C0B6 783 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 CSRNP2Q9H175 543 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 DNM3Q9UQ16 869 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 SLIT3O75094 1523 aa6.04□□□□□ -1.44
VPS50-214ENST00000477935 ITSN1Q15811 1721 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PRR5-ARHGAP8B1AHC4 643 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA12O60330 932 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 RBP3P10745 1247 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 IBSPP21815 317 aaPredicted RBP6.03□□□□□ -1.44
VPS50-214ENST00000477935 SREBF1P36956 1147 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 FLT3LGP49771 235 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PER3P56645 1201 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 SEPT2Q15019 361 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 DEFB115Q30KQ5 88 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 LSM12Q3MHD2 195 aaKnown RBP6.03□□□□□ -1.44
VPS50-214ENST00000477935 MFSD14BQ5SR56 506 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 ZNF572Q7Z3I7 529 aaPredicted RBP6.03□□□□□ -1.44
VPS50-214ENST00000477935 PQLC1Q8N2U9 271 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PPM1NQ8N819 430 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 FBXO18Q8NFZ0 1043 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 FUBP3Q96I24 572 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS50-214ENST00000477935 ZNF341Q9BYN7 854 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 KCNH6Q9H252 994 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA9Q9Y5G4 932 aaKnown RBP6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA8Q9Y5G5 932 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA7Q9Y5G6 932 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA6Q9Y5G7 932 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 PCDHGA3Q9Y5H0 932 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 COL18A1P39060 1754 aa6.03□□□□□ -1.44
VPS50-214ENST00000477935 SHTN1A0MZ66 631 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 TBKBP1A7MCY6 615 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 GRXCR1A8MXD5 290 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 NPIPB8E9PQR5 432 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 FZD9O00144 591 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 WNT10BO00744 389 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 ENDOD1O94919 500 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 KCNA3P22001 575 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 KRT85P78386 507 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 TMF1P82094 1093 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 TUBA3CQ13748 450 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 ACAP2Q15057 778 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 CSRP2Q16527 193 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 RABL3Q5HYI8 236 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 FAM47AQ5JRC9 791 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 TUBA3EQ6PEY2 450 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 OR2I1PQ8NGU4 316 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS50-214ENST00000477935 KRTAP4-11Q9BYQ6 195 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 ASPSCR1Q9BZE9 553 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 LANCL2Q9NS86 450 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 HOMER2Q9NSB8 354 aa6.02□□□□□ -1.45
VPS50-214ENST00000477935 TUBD1Q9UJT1 453 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms