RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TAF2Q6P1X5 1199 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 FOXR1Q6PIV2 292 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 TRIM69Q86WT6 500 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 IFNLR1Q8IU57 520 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 SRRM1Q8IYB3 904 aaKnown RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ANKRD44Q8N8A2 993 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MCOLN3Q8TDD5 553 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 PDCD6IPQ8WUM4 868 aaKnown RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 TBATAQ96M53 351 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 DBNDD2Q9BQY9 259 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 DESI2Q9BSY9 194 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 SP110Q9HB58 689 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 SENP1Q9P0U3 644 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 APPL1Q9UKG1 709 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MAPK8IP1Q9UQF2 711 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 GAKO14976 1311 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ATF4P18848 351 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CD53P19397 219 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 EIF4A1P60842 406 aaKnown RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF235Q14590 738 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 USF2Q15853 346 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 LONP2Q86WA8 852 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ERICH1Q86X53 443 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 BRSK2Q8IWQ3 736 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 LRRC8AQ8IWT6 810 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MIEF2Q96C03 454 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 H0Y626 953 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 H3BUI4 141 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 PDE9AO76083 593 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CHEK2O96017 543 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 SLFN14P0C7P3 912 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 NR1D1P20393 614 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 LRMPQ12912 555 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 TIGD5Q53EQ6 642 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 HP1BP3Q5SSJ5 553 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 OR6B2Q6IFH4 312 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 DENND6AQ8IWF6 608 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CCNYQ8ND76 341 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 CCDC127Q96BQ5 260 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 GLIS2Q9BZE0 524 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-206ENST00000367253 RNPEPQ9H4A4 650 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ZBTB40Q9NUA8 1239 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 ZMYM2Q9UBW7 1377 aa9.06□□□□□ -0.96
SYNE1-206ENST00000367253 MAPK13O15264 365 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 NDUFB5O43674 189 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 AKT1P31749 480 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 STAT1P42224 750 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 NNTQ13423 1086 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ART3Q13508 389 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 KRT24Q2M2I5 525 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 C1orf94Q6P1W5 598 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 RNASE11Q8TAA1 199 aaKnown RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 KCTD4Q8WVF5 259 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 FTHL17Q9BXU8 183 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ING2Q9H160 280 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 NEUROG2Q9H2A3 272 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CAAP1Q9H8G2 361 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 LMBRD1Q9NUN5 540 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 NCAPD2Q15021 1401 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CD163L1Q9NR16 1453 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 TBKBP1A7MCY6 615 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 SNX2O60749 519 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 KRT16P08779 473 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CKBP12277 381 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 SERPINB4P48594 390 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 AARSP49588 968 aaKnown RBP eCLIP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PSEN1P49768 467 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PEX5P50542 639 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 RPS6KA3P51812 740 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PTPN5P54829 565 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CDK17Q00537 523 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PAN2Q504Q3 1202 aaKnown RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PPP6R3Q5H9R7 873 aaPredicted RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 GPR108Q9NPR9 543 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 MYO1AQ9UBC5 1043 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 SEPT3Q9UH03 358 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 PCDHB15Q9Y5E8 787 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ZBTB39O15060 712 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CDC40O60508 579 aaKnown RBP eCLIP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF806P0C7X5 589 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 MAP4P27816 1152 aaKnown RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ETFBP38117 255 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 CYP27A1Q02318 531 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 ALS2CLQ60I27 953 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 KCTD1Q719H9 257 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 TRMT11Q7Z4G4 463 aaKnown RBP9.05□□□□□ -0.96
SYNE1-206ENST00000367253 RHPN2Q8IUC4 686 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 MFN1Q8IWA4 741 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 WDR48Q8TAF3 677 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 HAPLN3Q96S86 360 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 FOXP3Q9BZS1 431 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 FANCEQ9HB96 536 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 KLC4Q9NSK0 619 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 GSTA4O15217 222 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 DCTN3O75935 186 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 TBC1D25Q3MII6 688 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 C3orf20Q8ND61 904 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 SUN3Q8TAQ9 357 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 THAP11Q96EK4 314 aa9.05□□□□□ -0.96
SYNE1-206ENST00000367253 DNAJC1Q96KC8 554 aaKnown RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms