RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR48, Length 113 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR48	snR48	FRA1	Q07825	749 aa		4.41	□□□□□ -1.7
snR48	snR48	WTM2	Q12206	467 aa		4.4	□□□□□ -1.71
snR48	snR48	MRPL16	P38064	232 aa		4.39	□□□□□ -1.71
snR48	snR48	YKR073C	P36153	106 aa		4.38	□□□□□ -1.71
snR48	snR48	MED7	Q08278	222 aa		4.38	□□□□□ -1.71
snR48	snR48	AI3	P03877	415 aa		4.37	□□□□□ -1.71
snR48	snR48	UBP5	P39944	805 aa		4.37	□□□□□ -1.71
snR48	snR48	SPR3	P41901	512 aa		4.36	□□□□□ -1.71
snR48	snR48	JJJ2	P46997	583 aa		4.36	□□□□□ -1.71
snR48	snR48	SPT2	P06843	333 aa	Predicted RBP	4.35	□□□□□ -1.71
snR48	snR48	IRE1	P32361	1115 aa		4.35	□□□□□ -1.71
snR48	snR48	CTH1	P47976	325 aa		4.35	□□□□□ -1.71
snR48	snR48	TRP3	P00937	484 aa		4.34	□□□□□ -1.71
snR48	snR48	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.71	not detected
snR48	snR48	STB3	Q12427	513 aa		4.34	□□□□□ -1.71
snR48	snR48	NHA1	Q99271	985 aa		4.34	□□□□□ -1.71
snR48	snR48	SHM1	P37292	490 aa	Predicted RBP	4.33	□□□□□ -1.72
snR48	snR48	MSC7	P38694	644 aa		4.33	□□□□□ -1.72
snR48	snR48	YCR015C	P25616	317 aa		4.32	□□□□□ -1.72
snR48	snR48	GUT2	P32191	649 aa		4.32	□□□□□ -1.72
snR48	snR48	LIP5	P32875	414 aa		4.32	□□□□□ -1.72
snR48	snR48	ARI1	P53111	347 aa	Known RBP	4.32	□□□□□ -1.72
snR48	snR48	PSH1	Q12161	406 aa		4.32	□□□□□ -1.72
snR48	snR48	ARG8	P18544	423 aa		4.31	□□□□□ -1.72
snR48	snR48	PDC6	P26263	563 aa	Known RBP	4.31	□□□□□ -1.72
snR48	snR48	SAC7	P17121	654 aa		4.3	□□□□□ -1.72
snR48	snR48	TOS1	P38288	455 aa		4.3	□□□□□ -1.72
snR48	snR48	PKH3	Q03306	898 aa	Predicted RBP	4.3	□□□□□ -1.72
snR48	snR48	KAE1	P36132	386 aa		4.29	□□□□□ -1.72
snR48	snR48	PGM2	P37012	569 aa	Known RBP	4.29	□□□□□ -1.72
snR48	snR48	SUM1	P46676	1062 aa		4.29	□□□□□ -1.72
snR48	snR48	BRE4	Q07660	1125 aa		4.28	□□□□□ -1.72
snR48	snR48	YLR122C	Q12312	125 aa		4.28	□□□□□ -1.72
snR48	snR48	RPP1A	P05318	106 aa	Predicted RBP	4.27	□□□□□ -1.73
snR48	snR48	KTR1	P27810	393 aa	Known RBP	4.27	□□□□□ -1.73
snR48	snR48	UTR2	P32623	467 aa		4.27	□□□□□ -1.73
snR48	snR48	ALG14	P38242	237 aa		4.27	□□□□□ -1.73
snR48	snR48	DAT1	P13483	248 aa	Known RBP	4.26	□□□□□ -1.73
snR48	snR48	COQ2	P32378	372 aa		4.26	□□□□□ -1.73
snR48	snR48	SFA1	P32771	386 aa		4.26	□□□□□ -1.73
snR48	snR48	ALA1	P40825	983 aa	Known RBP	4.26	□□□□□ -1.73
snR48	snR48	UTP7	P40055	554 aa	Known RBP	4.25	□□□□□ -1.73
snR48	snR48	LEU1	P07264	779 aa	Known RBP	4.24	□□□□□ -1.73
snR48	snR48	YKL222C	P35995	705 aa		4.24	□□□□□ -1.73
snR48	snR48	GAS5	Q08193	484 aa		4.24	□□□□□ -1.73
snR48	snR48	RNQ1	P25367	405 aa		4.23	□□□□□ -1.73
snR48	snR48	TBS1	P38114	1094 aa		4.23	□□□□□ -1.73
snR48	snR48	MAG2	Q06436	670 aa	Known RBP	4.23	□□□□□ -1.73
snR48	snR48	RPS31	P05759	152 aa	Known RBP	4.22	□□□□□ -1.73
snR48	snR48	NAR1	P23503	491 aa	Known RBP	4.22	□□□□□ -1.73
snR48	snR48	STE20	Q03497	939 aa	Known RBP	4.22	□□□□□ -1.73
snR48	snR48	MCM16	Q12262	181 aa		4.22	□□□□□ -1.73
snR48	snR48	APL6	P46682	809 aa		4.21	□□□□□ -1.74
snR48	snR48	GIS4	Q04233	774 aa		4.21	□□□□□ -1.74
snR48	snR48	ISR1	Q06098	443 aa	Known RBP	4.2	□□□□□ -1.74
snR48	snR48	RRM3	P38766	723 aa		4.19	□□□□□ -1.74
snR48	snR48	RAD59	Q12223	238 aa		4.19	□□□□□ -1.74
snR48	snR48	MAK16	P10962	306 aa	Predicted RBP	4.18	□□□□□ -1.74
snR48	snR48	RGP1	P16664	663 aa		4.18	□□□□□ -1.74
snR48	snR48	SAF1	P38352	637 aa		4.18	□□□□□ -1.74
snR48	snR48	SLX8	P40072	274 aa		4.18	□□□□□ -1.74
snR48	snR48	NIT1	P40447	199 aa		4.18	□□□□□ -1.74
snR48	snR48	ALD2	P47771	506 aa		4.18	□□□□□ -1.74
snR48	snR48	ATF2	P53296	535 aa		4.18	□□□□□ -1.74
snR48	snR48	HEH2	Q03281	663 aa		4.18	□□□□□ -1.74
snR48	snR48	PRK1	P40494	810 aa		4.17	□□□□□ -1.74
snR48	snR48	MRX12	P47084	519 aa		4.17	□□□□□ -1.74
snR48	snR48	ESC8	Q08119	714 aa		4.16	□□□□□ -1.74
snR48	snR48	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
snR48	snR48	YGR130C	P53278	816 aa		4.15	□□□□□ -1.75
snR48	snR48	CHS2	P14180	963 aa		4.14	□□□□□ -1.75
snR48	snR48	NGR1	P32831	672 aa	Known RBP	4.13	□□□□□ -1.75
snR48	snR48	HAL5	P38970	855 aa	Known RBP	4.13	□□□□□ -1.75
snR48	snR48	YPQ2	Q06328	317 aa		4.13	□□□□□ -1.75
snR48	snR48	RSC6	P25632	483 aa		4.12	□□□□□ -1.75
snR48	snR48	SEG2	P34250	1132 aa		4.12	□□□□□ -1.75
snR48	snR48	CYC7	P00045	113 aa		4.11	□□□□□ -1.75
snR48	snR48	SPO74	P45819	413 aa		4.11	□□□□□ -1.75
snR48	snR48	TAF1	P46677	1066 aa		4.1	□□□□□ -1.75
snR48	snR48	HPC2	Q01448	625 aa		4.09	□□□□□ -1.75
snR48	snR48	SPB4	P25808	606 aa	Predicted RBP	4.08	□□□□□ -1.76
snR48	snR48	GIP4	P39732	760 aa		4.08	□□□□□ -1.76
snR48	snR48	LRG1	P35688	1017 aa		4.07	□□□□□ -1.76
snR48	snR48	CSN12	P47130	423 aa		4.07	□□□□□ -1.76
snR48	snR48	ECL1	P48235	211 aa		4.07	□□□□□ -1.76
snR48	snR48	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
snR48	snR48	TAD3	Q9URQ3	322 aa		4.07	□□□□□ -1.76
snR48	snR48	SLP1	Q12232	587 aa		4.06	□□□□□ -1.76
snR48	snR48	YPT53	P36019	220 aa		4.05	□□□□□ -1.76
snR48	snR48	SEA4	P38164	1038 aa		4.05	□□□□□ -1.76
snR48	snR48	YNL165W	P53891	406 aa		4.05	□□□□□ -1.76
snR48	snR48	HDA3	Q06623	655 aa		4.05	□□□□□ -1.76
snR48	snR48	HDA2	Q06629	674 aa		4.05	□□□□□ -1.76
snR48	snR48	TY1A-NL1	Q12391	440 aa	Known RBP	4.05	□□□□□ -1.76
snR48	snR48	YTA6	P40328	754 aa		4.04	□□□□□ -1.76
snR48	snR48	EMP47	P43555	445 aa		4.04	□□□□□ -1.76
snR48	snR48	SAS10	Q12136	610 aa	Predicted RBP	4.04	□□□□□ -1.76
snR48	snR48	SKP1	P52286	194 aa		4.03	□□□□□ -1.76
snR48	snR48	PRP43	P53131	767 aa	Known RBP	4.03	□□□□□ -1.76
snR48	snR48	UTP13	Q05946	817 aa	Known RBP	4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms