RNA–Protein interactions for RNA: YPL042C

SSN3, Transcript of Cyclin-dependent protein kinase, yeast

Gene SSN3, Length 1,668 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSN3	YPL042C	RPT2	P40327	437 aa	Known RBP	11.43	□□□□□ -0.58
SSN3	YPL042C	RMT2	Q03305	412 aa		11.43	□□□□□ -0.58
SSN3	YPL042C	NOP53	Q12080	455 aa	Known RBP	11.43	□□□□□ -0.58
SSN3	YPL042C	RAD4	P14736	754 aa		11.43	□□□□□ -0.58
SSN3	YPL042C	RPN11	P43588	306 aa	Known RBP	11.43	□□□□□ -0.58
SSN3	YPL042C	TAF13	P11747	167 aa		11.42	□□□□□ -0.58
SSN3	YPL042C	GLN1	P32288	370 aa	Known RBP	11.42	□□□□□ -0.58
SSN3	YPL042C	GRX1	P25373	110 aa	Known RBP	11.41	□□□□□ -0.58
SSN3	YPL042C	BRE1	Q07457	700 aa	Known RBP	11.41	□□□□□ -0.58
SSN3	YPL042C	PRP40	P33203	583 aa	Known RBP	11.4	□□□□□ -0.58
SSN3	YPL042C	YPP1	P46951	817 aa		11.4	□□□□□ -0.59
SSN3	YPL042C	TUM1	Q08686	304 aa	Known RBP	11.4	□□□□□ -0.59
SSN3	YPL042C	YJL181W	P46987	611 aa		11.39	□□□□□ -0.59
SSN3	YPL042C	POL32	P47110	350 aa		11.39	□□□□□ -0.59
SSN3	YPL042C	YDR306C	Q06640	478 aa		11.38	□□□□□ -0.59
SSN3	YPL042C	TRP5	P00931	707 aa	Known RBP	11.37	□□□□□ -0.59
SSN3	YPL042C	ZDS2	P54786	942 aa		11.37	□□□□□ -0.59
SSN3	YPL042C	CSI1	Q04368	295 aa		11.37	□□□□□ -0.59
SSN3	YPL042C	NPR2	P39923	615 aa		11.36	□□□□□ -0.59
SSN3	YPL042C	RPS19A	P07280	144 aa	Known RBP	11.36	□□□□□ -0.59
SSN3	YPL042C	RPS19B	P07281	144 aa	Predicted RBP	11.36	□□□□□ -0.59
SSN3	YPL042C	MRP7	P12687	371 aa		11.36	□□□□□ -0.59
SSN3	YPL042C	SSP2	Q08646	371 aa		11.36	□□□□□ -0.59
SSN3	YPL042C	GAL11	P19659	1081 aa		11.35	□□□□□ -0.59
SSN3	YPL042C	DNM1	P54861	757 aa		11.35	□□□□□ -0.59
SSN3	YPL042C	PUF6	Q04373	656 aa	Known RBP	11.35	□□□□□ -0.59
SSN3	YPL042C	UBP1	P25037	809 aa		11.34	□□□□□ -0.59
SSN3	YPL042C	BUD31	P25337	157 aa	Predicted RBP	11.34	□□□□□ -0.59
SSN3	YPL042C	MSB4	Q12317	492 aa		11.34	□□□□□ -0.59
SSN3	YPL042C	YGR122W	P53272	402 aa		11.33	□□□□□ -0.6
SSN3	YPL042C	QCR6	P00127	147 aa		11.33	□□□□□ -0.6
SSN3	YPL042C	RAD24	P32641	659 aa		11.33	□□□□□ -0.6
SSN3	YPL042C	CST6	P40535	587 aa		11.33	□□□□□ -0.6
SSN3	YPL042C	PHM7	Q12252	991 aa		11.33	□□□□□ -0.6
SSN3	YPL042C	SWI1	P09547	1314 aa		11.32	□□□□□ -0.6
SSN3	YPL042C	RNA1	P11745	407 aa	Known RBP	11.31	□□□□□ -0.6
SSN3	YPL042C	SEC20	P28791	383 aa		11.31	□□□□□ -0.6
SSN3	YPL042C	PAM1	P37304	830 aa	Known RBP	11.31	□□□□□ -0.6
SSN3	YPL042C	NUP133	P36161	1157 aa		11.3	□□□□□ -0.6
SSN3	YPL042C	YNG2	P38806	282 aa	Known RBP	11.3	□□□□□ -0.6
SSN3	YPL042C	VPS64	Q03944	604 aa		11.3	□□□□□ -0.6
SSN3	YPL042C	GRE2	Q12068	342 aa	Known RBP	11.3	□□□□□ -0.6
SSN3	YPL042C	ARG8	P18544	423 aa		11.3	□□□□□ -0.6
SSN3	YPL042C	ILV3	P39522	585 aa	Known RBP	11.3	□□□□□ -0.6
SSN3	YPL042C	YPR204W	Q08995	1032 aa		11.3	□□□□□ -0.6
SSN3	YPL042C	APL2	P36000	726 aa	Predicted RBP	11.29	□□□□□ -0.6
SSN3	YPL042C	BOI2	P39969	1040 aa		11.29	□□□□□ -0.6
SSN3	YPL042C	HOS4	P40480	1083 aa		11.29	□□□□□ -0.6
SSN3	YPL042C	TEA1	P47988	759 aa		11.29	□□□□□ -0.6
SSN3	YPL042C	GIR2	Q03768	265 aa	Predicted RBP	11.29	□□□□□ -0.6
SSN3	YPL042C	RPA135	P22138	1203 aa	Known RBP	11.28	□□□□□ -0.6
SSN3	YPL042C	SPO1	P53541	631 aa		11.28	□□□□□ -0.6
SSN3	YPL042C	GRX3	Q03835	250 aa		11.28	□□□□□ -0.6
SSN3	YPL042C	SWC3	P31376	625 aa		11.27	□□□□□ -0.6
SSN3	YPL042C	UTP10	P42945	1769 aa	Known RBP	11.27	□□□□□ -0.61
SSN3	YPL042C	MPE1	P35728	441 aa	Known RBP	11.27	□□□□□ -0.61
SSN3	YPL042C	LYS4	P49367	693 aa	Predicted RBP	11.27	□□□□□ -0.61
SSN3	YPL042C	YLR271W	Q06152	274 aa		11.27	□□□□□ -0.61
SSN3	YPL042C	UBX5	Q06682	500 aa		11.27	□□□□□ -0.61
SSN3	YPL042C	MEH1	Q02205	184 aa		11.26	□□□□□ -0.61
SSN3	YPL042C	NYV1	Q12255	253 aa		11.26	□□□□□ -0.61
SSN3	YPL042C	DCD1	P06773	312 aa		11.25	□□□□□ -0.61
SSN3	YPL042C	PSK2	Q08217	1101 aa		11.25	□□□□□ -0.61
SSN3	YPL042C	SET1	P38827	1080 aa	Known RBP	11.24	□□□□□ -0.61
SSN3	YPL042C	GCD7	P32502	381 aa	Predicted RBP	11.24	□□□□□ -0.61
SSN3	YPL042C	SER1	P33330	395 aa	Known RBP	11.24	□□□□□ -0.61
SSN3	YPL042C	YGL082W	P53155	381 aa		11.24	□□□□□ -0.61
SSN3	YPL042C	BUG1	Q12191	341 aa		11.24	□□□□□ -0.61
SSN3	YPL042C	LPD1	P09624	499 aa	Known RBP	11.23	□□□□□ -0.61
SSN3	YPL042C	TCB2	P48231	1178 aa		11.23	□□□□□ -0.61
SSN3	YPL042C	HGH1	P48362	394 aa	Known RBP	11.23	□□□□□ -0.61
SSN3	YPL042C	BDF1	P35817	686 aa		11.22	□□□□□ -0.61
SSN3	YPL042C	UBP12	P39538	1254 aa		11.22	□□□□□ -0.61
SSN3	YPL042C	PKH1	Q03407	766 aa		11.21	□□□□□ -0.61
SSN3	YPL042C	CTH1	P47976	325 aa		11.2	□□□□□ -0.62
SSN3	YPL042C	HSC82	P15108	705 aa	Known RBP	11.2	□□□□□ -0.62
SSN3	YPL042C	RPC31	P17890	251 aa		11.2	□□□□□ -0.62
SSN3	YPL042C	NMD2	P38798	1089 aa	Known RBP	11.2	□□□□□ -0.62
SSN3	YPL042C	PMC1	P38929	1173 aa	Predicted RBP	11.2	□□□□□ -0.62
SSN3	YPL042C	UTP22	P53254	1237 aa	Predicted RBP	11.2	□□□□□ -0.62
SSN3	YPL042C	CDC11	P32458	415 aa		11.19	□□□□□ -0.62
SSN3	YPL042C	PEA2	P40091	420 aa		11.19	□□□□□ -0.62
SSN3	YPL042C	OCA5	P38738	679 aa		11.18	□□□□□ -0.62
SSN3	YPL042C	GTT3	P39996	337 aa		11.18	□□□□□ -0.62
SSN3	YPL042C	PIL1	P53252	339 aa	Known RBP	11.18	□□□□□ -0.62
SSN3	YPL042C	FCP1	Q03254	732 aa		11.18	□□□□□ -0.62
SSN3	YPL042C	ECM16	Q04217	1267 aa	Known RBP	11.18	□□□□□ -0.62
SSN3	YPL042C	ALD2	P47771	506 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	ITC1	P53125	1264 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	YAF9	P53930	226 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	PRI1	P10363	409 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	TOM20	P35180	183 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	RPG1	P38249	964 aa	Known RBP	11.17	□□□□□ -0.62
SSN3	YPL042C	YNL011C	P53980	444 aa		11.17	□□□□□ -0.62
SSN3	YPL042C	YBL086C	P38177	466 aa		11.16	□□□□□ -0.62
SSN3	YPL042C	MTC5	Q03897	1148 aa		11.16	□□□□□ -0.62
SSN3	YPL042C	SSK22	P25390	1331 aa	Predicted RBP	11.16	□□□□□ -0.62
SSN3	YPL042C	TOS1	P38288	455 aa		11.14	□□□□□ -0.63
SSN3	YPL042C	ERP2	P39704	215 aa		11.14	□□□□□ -0.63
SSN3	YPL042C	ALD3	P54114	506 aa		11.14	□□□□□ -0.63

Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms