RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 RBM33Q96EV2 1170 aaKnown RBP12.02□□□□□ -0.49
PNKP-229ENST00000637897 SENP3Q9H4L4 574 aaPredicted RBP12.02□□□□□ -0.49
PNKP-229ENST00000637897 ADAMTS13Q76LX8 1427 aa12.02□□□□□ -0.49
PNKP-229ENST00000637897 RIMS2Q9UQ26 1411 aa12.02□□□□□ -0.49
PNKP-229ENST00000637897 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
PNKP-229ENST00000637897 EID1Q9Y6B2 187 aa12.01□□□□□ -0.49
PNKP-229ENST00000637897 NWD1Q149M9 1564 aa12.01□□□□□ -0.49
PNKP-229ENST00000637897 KCNA6P17658 529 aa12□□□□□ -0.49
PNKP-229ENST00000637897 NUTM2DQ5VT03 806 aaPredicted RBP12□□□□□ -0.49
PNKP-229ENST00000637897 PLEKHG1Q9ULL1 1385 aa12□□□□□ -0.49
PNKP-229ENST00000637897 TOM1O60784 492 aa11.99□□□□□ -0.49
PNKP-229ENST00000637897 TMEM94Q12767 1356 aa11.98□□□□□ -0.49
PNKP-229ENST00000637897 NRXN3Q9Y4C0 1643 aa11.97□□□□□ -0.49
PNKP-229ENST00000637897 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
PNKP-229ENST00000637897 PTPRUQ92729 1446 aa11.97□□□□□ -0.49
PNKP-229ENST00000637897 CHD2O14647 1828 aaKnown RBP11.97□□□□□ -0.49
PNKP-229ENST00000637897 SPHKAPQ2M3C7 1700 aa11.96□□□□□ -0.49
PNKP-229ENST00000637897 CLTCL1P53675 1640 aa11.96□□□□□ -0.5
PNKP-229ENST00000637897 SCAF1Q9H7N4 1312 aaKnown RBP11.95□□□□□ -0.5
PNKP-229ENST00000637897 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
PNKP-229ENST00000637897 TBX22Q9Y458 520 aa11.94□□□□□ -0.5
PNKP-229ENST00000637897 NKTRP30414 1462 aaKnown RBP11.94□□□□□ -0.5
PNKP-229ENST00000637897 MED1Q15648 1581 aaPredicted RBP11.92□□□□□ -0.5
PNKP-229ENST00000637897 TRPM2O94759 1503 aa11.92□□□□□ -0.5
PNKP-229ENST00000637897 NEXMIFQ5QGS0 1516 aa11.92□□□□□ -0.5
PNKP-229ENST00000637897 PROSER2Q86WR7 435 aaPredicted RBP11.92□□□□□ -0.5
PNKP-229ENST00000637897 FAM135BQ49AJ0 1406 aa11.92□□□□□ -0.5
PNKP-229ENST00000637897 FOXD1Q16676 465 aa11.9□□□□□ -0.5
PNKP-229ENST00000637897 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.9□□□□□ -0.5
PNKP-229ENST00000637897 SETBP1Q9Y6X0 1596 aa11.9□□□□□ -0.5
PNKP-229ENST00000637897 METP08581 1390 aa11.9□□□□□ -0.5
PNKP-229ENST00000637897 DIP2AQ14689 1571 aa11.88□□□□□ -0.51
PNKP-229ENST00000637897 ROBO1Q9Y6N7 1651 aa11.88□□□□□ -0.51
PNKP-229ENST00000637897 PPP1R15AO75807 674 aaPredicted RBP11.88□□□□□ -0.51
PNKP-229ENST00000637897 BCANQ96GW7 911 aa11.88□□□□□ -0.51
PNKP-229ENST00000637897 RGS17Q9UGC6 210 aaPredicted RBP11.88□□□□□ -0.51
PNKP-229ENST00000637897 XRN1Q8IZH2 1706 aaKnown RBP11.88□□□□□ -0.51
PNKP-229ENST00000637897 SETD1AO15047 1707 aaKnown RBP11.87□□□□□ -0.51
PNKP-229ENST00000637897 PIK3R4Q99570 1358 aa11.87□□□□□ -0.51
PNKP-229ENST00000637897 HDGFP51858 240 aaKnown RBP11.86□□□□□ -0.51
PNKP-229ENST00000637897 AMOTL2Q9Y2J4 779 aa11.86□□□□□ -0.51
PNKP-229ENST00000637897 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.86□□□□□ -0.51
PNKP-229ENST00000637897 TRIM52Q96A61 297 aa11.85□□□□□ -0.51
PNKP-229ENST00000637897 SLC4A1APQ9BWU0 796 aaKnown RBP11.85□□□□□ -0.51
PNKP-229ENST00000637897 NCOA3Q9Y6Q9 1424 aa11.85□□□□□ -0.51
PNKP-229ENST00000637897 SLAIN2Q9P270 581 aa11.84□□□□□ -0.51
PNKP-229ENST00000637897 KIF1BO60333 1816 aa11.83□□□□□ -0.51
PNKP-229ENST00000637897 MSH6P52701 1360 aa11.83□□□□□ -0.52
PNKP-229ENST00000637897 ZNF326Q5BKZ1 582 aaKnown RBP11.83□□□□□ -0.52
PNKP-229ENST00000637897 SPATA31E1Q6ZUB1 1445 aa11.83□□□□□ -0.52
PNKP-229ENST00000637897 MPHOSPH9Q99550 1183 aa11.82□□□□□ -0.52
PNKP-229ENST00000637897 PPLO60437 1756 aa11.81□□□□□ -0.52
PNKP-229ENST00000637897 COL16A1Q07092 1604 aaPredicted RBP11.81□□□□□ -0.52
PNKP-229ENST00000637897 C19orf44Q9H6X5 657 aa11.8□□□□□ -0.52
PNKP-229ENST00000637897 ADGRF5Q8IZF2 1346 aa11.8□□□□□ -0.52
PNKP-229ENST00000637897 ROBO2Q9HCK4 1378 aa11.79□□□□□ -0.52
PNKP-229ENST00000637897 MST1RQ04912 1400 aa11.79□□□□□ -0.52
PNKP-229ENST00000637897 PRAG1Q86YV5 1406 aa11.78□□□□□ -0.52
PNKP-229ENST00000637897 NALCNQ8IZF0 1738 aa11.78□□□□□ -0.52
PNKP-229ENST00000637897 ASXL1Q8IXJ9 1541 aa11.78□□□□□ -0.52
PNKP-229ENST00000637897 BRINP3Q76B58 766 aa11.78□□□□□ -0.52
PNKP-229ENST00000637897 SETD5Q9C0A6 1442 aa11.77□□□□□ -0.52
PNKP-229ENST00000637897 PHLPP1O60346 1717 aa11.77□□□□□ -0.52
PNKP-229ENST00000637897 IFT172Q9UG01 1749 aa11.77□□□□□ -0.52
PNKP-229ENST00000637897 LRP6O75581 1613 aa11.77□□□□□ -0.53
PNKP-229ENST00000637897 AHDC1Q5TGY3 1603 aaPredicted RBP11.77□□□□□ -0.53
PNKP-229ENST00000637897 RPGRIP1LQ68CZ1 1315 aa11.77□□□□□ -0.53
PNKP-229ENST00000637897 RAB3GAP2Q9H2M9 1393 aa11.77□□□□□ -0.53
PNKP-229ENST00000637897 POTEAQ6S8J7 498 aa11.76□□□□□ -0.53
PNKP-229ENST00000637897 CADPS2Q86UW7 1296 aa11.76□□□□□ -0.53
PNKP-229ENST00000637897 DCCP43146 1447 aa11.76□□□□□ -0.53
PNKP-229ENST00000637897 ADGRL3Q9HAR2 1447 aa11.76□□□□□ -0.53
PNKP-229ENST00000637897 VGFO15240 615 aaPredicted RBP11.75□□□□□ -0.53
PNKP-229ENST00000637897 DDX17Q92841 729 aaKnown RBP11.75□□□□□ -0.53
PNKP-229ENST00000637897 PTCH1Q13635 1447 aa11.75□□□□□ -0.53
PNKP-229ENST00000637897 RGL3Q3MIN7 710 aa11.74□□□□□ -0.53
PNKP-229ENST00000637897 CCDC144AA2RUR9 1427 aa11.74□□□□□ -0.53
PNKP-229ENST00000637897 PIK3C2GO75747 1445 aa11.73□□□□□ -0.53
PNKP-229ENST00000637897 ATF3P18847 181 aa11.73□□□□□ -0.53
PNKP-229ENST00000637897 C14orf37Q86TY3 774 aa11.73□□□□□ -0.53
PNKP-229ENST00000637897 NHSL1Q5SYE7 1610 aa11.72□□□□□ -0.53
PNKP-229ENST00000637897 NRXN1Q9ULB1 1477 aa11.72□□□□□ -0.53
PNKP-229ENST00000637897 JCADQ9P266 1359 aa11.72□□□□□ -0.53
PNKP-229ENST00000637897 PLEKHH1Q9ULM0 1364 aa11.72□□□□□ -0.53
PNKP-229ENST00000637897 C1orf167Q5SNV9 1468 aa11.71□□□□□ -0.53
PNKP-229ENST00000637897 ANKRD30BQ9BXX2 1392 aa11.71□□□□□ -0.53
PNKP-229ENST00000637897 TMEM132EQ6IEE7 984 aa11.71□□□□□ -0.53
PNKP-229ENST00000637897 TECPR2O15040 1411 aa11.7□□□□□ -0.54
PNKP-229ENST00000637897 ORAI2Q96SN7 254 aa11.7□□□□□ -0.54
PNKP-229ENST00000637897 PHF23Q9BUL5 403 aaPredicted RBP11.7□□□□□ -0.54
PNKP-229ENST00000637897 SHPRHQ149N8 1683 aa11.7□□□□□ -0.54
PNKP-229ENST00000637897 LAMC1P11047 1609 aa11.69□□□□□ -0.54
PNKP-229ENST00000637897 WAPLQ7Z5K2 1190 aa11.69□□□□□ -0.54
PNKP-229ENST00000637897 LRPPRCP42704 1394 aaKnown RBP11.68□□□□□ -0.54
PNKP-229ENST00000637897 ABCC11Q96J66 1382 aa11.67□□□□□ -0.54
PNKP-229ENST00000637897 CFAP70Q5T0N1 1121 aa11.67□□□□□ -0.54
PNKP-229ENST00000637897 C14orf93Q9H972 538 aaKnown RBP11.67□□□□□ -0.54
PNKP-229ENST00000637897 MYOM2P54296 1465 aa11.66□□□□□ -0.54
PNKP-229ENST00000637897 STK26Q9P289 416 aa11.66□□□□□ -0.54
PNKP-229ENST00000637897 KNDC1Q76NI1 1749 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms