RNA–Protein interactions for RNA: ENST00000636840.1

PNKP-226, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 117 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-226ENST00000636840 SPHKAPQ2M3C7 1700 aa12□□□□□ -0.49
PNKP-226ENST00000636840 NUTM2DQ5VT03 806 aaPredicted RBP11.99□□□□□ -0.49
PNKP-226ENST00000636840 TRPM2O94759 1503 aa11.99□□□□□ -0.49
PNKP-226ENST00000636840 SLC26A8Q96RN1 970 aa11.98□□□□□ -0.49
PNKP-226ENST00000636840 TBX22Q9Y458 520 aa11.98□□□□□ -0.49
PNKP-226ENST00000636840 ZNF335Q9H4Z2 1342 aaPredicted RBP11.97□□□□□ -0.49
PNKP-226ENST00000636840 TMEM131LA2VDJ0 1609 aa11.97□□□□□ -0.49
PNKP-226ENST00000636840 PLEKHG1Q9ULL1 1385 aa11.96□□□□□ -0.49
PNKP-226ENST00000636840 POLR1AO95602 1720 aaPredicted RBP11.96□□□□□ -0.49
PNKP-226ENST00000636840 KIF1BO60333 1816 aa11.95□□□□□ -0.5
PNKP-226ENST00000636840 KCNA6P17658 529 aa11.95□□□□□ -0.5
PNKP-226ENST00000636840 STAC3Q96MF2 364 aa11.95□□□□□ -0.5
PNKP-226ENST00000636840 PCGF6Q9BYE7 350 aa11.95□□□□□ -0.5
PNKP-226ENST00000636840 SENP3Q9H4L4 574 aaPredicted RBP11.95□□□□□ -0.5
PNKP-226ENST00000636840 ZFYVE9O95405 1425 aa11.94□□□□□ -0.5
PNKP-226ENST00000636840 ANKRD30BQ9BXX2 1392 aa11.94□□□□□ -0.5
PNKP-226ENST00000636840 IQGAP1P46940 1657 aa11.94□□□□□ -0.5
PNKP-226ENST00000636840 CLTCL1P53675 1640 aa11.93□□□□□ -0.5
PNKP-226ENST00000636840 NEURL4Q96JN8 1562 aa11.92□□□□□ -0.5
PNKP-226ENST00000636840 PROSER2Q86WR7 435 aaPredicted RBP11.92□□□□□ -0.5
PNKP-226ENST00000636840 MYO5BQ9ULV0 1848 aa11.91□□□□□ -0.5
PNKP-226ENST00000636840 FBXO41Q8TF61 875 aa11.91□□□□□ -0.5
PNKP-226ENST00000636840 TOM1O60784 492 aa11.9□□□□□ -0.5
PNKP-226ENST00000636840 DCAF11Q8TEB1 546 aa11.9□□□□□ -0.5
PNKP-226ENST00000636840 PIK3R4Q99570 1358 aa11.9□□□□□ -0.5
PNKP-226ENST00000636840 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
PNKP-226ENST00000636840 CPS1P31327 1500 aa11.89□□□□□ -0.51
PNKP-226ENST00000636840 NEUROD1Q13562 356 aa11.88□□□□□ -0.51
PNKP-226ENST00000636840 AMOTL2Q9Y2J4 779 aa11.88□□□□□ -0.51
PNKP-226ENST00000636840 SPATA31E1Q6ZUB1 1445 aa11.87□□□□□ -0.51
PNKP-226ENST00000636840 UBAP1LF5GYI3 381 aa11.87□□□□□ -0.51
PNKP-226ENST00000636840 C14orf37Q86TY3 774 aa11.87□□□□□ -0.51
PNKP-226ENST00000636840 ADGRF5Q8IZF2 1346 aa11.86□□□□□ -0.51
PNKP-226ENST00000636840 LTBP4Q8N2S1 1624 aa11.86□□□□□ -0.51
PNKP-226ENST00000636840 IQSEC2Q5JU85 1478 aa11.86□□□□□ -0.51
PNKP-226ENST00000636840 NEXMIFQ5QGS0 1516 aa11.86□□□□□ -0.51
PNKP-226ENST00000636840 ADAMTS13Q76LX8 1427 aa11.86□□□□□ -0.51
PNKP-226ENST00000636840 DIP2AQ14689 1571 aa11.84□□□□□ -0.51
PNKP-226ENST00000636840 DHX57Q6P158 1386 aaKnown RBP11.84□□□□□ -0.51
PNKP-226ENST00000636840 SIN3AQ96ST3 1273 aa11.84□□□□□ -0.51
PNKP-226ENST00000636840 C14orf93Q9H972 538 aaKnown RBP11.83□□□□□ -0.52
PNKP-226ENST00000636840 ILDR1Q86SU0 546 aaPredicted RBP11.82□□□□□ -0.52
PNKP-226ENST00000636840 SETBP1Q9Y6X0 1596 aa11.82□□□□□ -0.52
PNKP-226ENST00000636840 SCAF1Q9H7N4 1312 aaKnown RBP11.82□□□□□ -0.52
PNKP-226ENST00000636840 LRRC7Q96NW7 1537 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 METP08581 1390 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 TMEM94Q12767 1356 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 ATF3P18847 181 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 CFAP70Q5T0N1 1121 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 C19orf44Q9H6X5 657 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 STK26Q9P289 416 aa11.81□□□□□ -0.52
PNKP-226ENST00000636840 MSH6P52701 1360 aa11.8□□□□□ -0.52
PNKP-226ENST00000636840 PPLO60437 1756 aa11.8□□□□□ -0.52
PNKP-226ENST00000636840 PIP4K2BP78356 416 aa11.8□□□□□ -0.52
PNKP-226ENST00000636840 TMEM132EQ6IEE7 984 aa11.8□□□□□ -0.52
PNKP-226ENST00000636840 L3MBTL2Q969R5 705 aa11.8□□□□□ -0.52
PNKP-226ENST00000636840 RBM33Q96EV2 1170 aaKnown RBP11.8□□□□□ -0.52
PNKP-226ENST00000636840 NKTRP30414 1462 aaKnown RBP11.8□□□□□ -0.52
PNKP-226ENST00000636840 CHD2O14647 1828 aaKnown RBP11.79□□□□□ -0.52
PNKP-226ENST00000636840 CADPS2Q86UW7 1296 aa11.79□□□□□ -0.52
PNKP-226ENST00000636840 ALKQ9UM73 1620 aa11.78□□□□□ -0.52
PNKP-226ENST00000636840 MYOM2P54296 1465 aa11.78□□□□□ -0.52
PNKP-226ENST00000636840 CCER1Q8TC90 406 aaPredicted RBP11.78□□□□□ -0.52
PNKP-226ENST00000636840 SIRT1Q96EB6 747 aa11.78□□□□□ -0.52
PNKP-226ENST00000636840 CLSPNQ9HAW4 1339 aa11.78□□□□□ -0.52
PNKP-226ENST00000636840 PTPRUQ92729 1446 aa11.77□□□□□ -0.52
PNKP-226ENST00000636840 POGKQ9P215 609 aa11.77□□□□□ -0.53
PNKP-226ENST00000636840 TONSLQ96HA7 1378 aa11.77□□□□□ -0.53
PNKP-226ENST00000636840 ABCC11Q96J66 1382 aa11.77□□□□□ -0.53
PNKP-226ENST00000636840 PIK3C2GO75747 1445 aa11.77□□□□□ -0.53
PNKP-226ENST00000636840 SLAIN2Q9P270 581 aa11.76□□□□□ -0.53
PNKP-226ENST00000636840 LRPPRCP42704 1394 aaKnown RBP11.76□□□□□ -0.53
PNKP-226ENST00000636840 NWD1Q149M9 1564 aa11.75□□□□□ -0.53
PNKP-226ENST00000636840 STRCP1A6NGW2 1772 aa11.75□□□□□ -0.53
PNKP-226ENST00000636840 TIMELESSQ9UNS1 1208 aa11.75□□□□□ -0.53
PNKP-226ENST00000636840 NRXN3Q9Y4C0 1643 aa11.75□□□□□ -0.53
PNKP-226ENST00000636840 TRAK1Q9UPV9 953 aa11.74□□□□□ -0.53
PNKP-226ENST00000636840 NRXN1Q9ULB1 1477 aa11.74□□□□□ -0.53
PNKP-226ENST00000636840 IFT172Q9UG01 1749 aa11.74□□□□□ -0.53
PNKP-226ENST00000636840 WAPLQ7Z5K2 1190 aa11.73□□□□□ -0.53
PNKP-226ENST00000636840 YTHDC2Q9H6S0 1430 aaKnown RBP11.73□□□□□ -0.53
PNKP-226ENST00000636840 PTCH1Q13635 1447 aa11.71□□□□□ -0.53
PNKP-226ENST00000636840 ROBO2Q9HCK4 1378 aa11.71□□□□□ -0.53
PNKP-226ENST00000636840 PRAM1Q96QH2 718 aa11.71□□□□□ -0.53
PNKP-226ENST00000636840 LAMC1P11047 1609 aa11.7□□□□□ -0.54
PNKP-226ENST00000636840 TECPR2O15040 1411 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 FAM135BQ49AJ0 1406 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 SAFB2Q14151 953 aaKnown RBP eCLIP11.69□□□□□ -0.54
PNKP-226ENST00000636840 NBPF1Q3BBV0 1214 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 XRN1Q8IZH2 1706 aaKnown RBP11.69□□□□□ -0.54
PNKP-226ENST00000636840 DCCP43146 1447 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 PRAG1Q86YV5 1406 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 ADGRL3Q9HAR2 1447 aa11.69□□□□□ -0.54
PNKP-226ENST00000636840 SETD1AO15047 1707 aaKnown RBP11.66□□□□□ -0.54
PNKP-226ENST00000636840 XIRP1Q702N8 1843 aaKnown RBP11.66□□□□□ -0.54
PNKP-226ENST00000636840 HSPA1LP34931 641 aa11.66□□□□□ -0.54
PNKP-226ENST00000636840 CARD11Q9BXL7 1154 aa11.66□□□□□ -0.54
PNKP-226ENST00000636840 ROCK2O75116 1388 aaKnown RBP11.66□□□□□ -0.54
PNKP-226ENST00000636840 NBPF8Q3BBV2 869 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms