RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 LRRC7Q96NW7 1537 aa22.41■■□□□ 1.18
LINC00643-205ENST00000623219 RIMS2Q9UQ26 1411 aa22.39■■□□□ 1.17
LINC00643-205ENST00000623219 DIP2AQ14689 1571 aa22.38■■□□□ 1.17
LINC00643-205ENST00000623219 ALKQ9UM73 1620 aa22.37■■□□□ 1.17
LINC00643-205ENST00000623219 PLEKHG1Q9ULL1 1385 aa22.35■■□□□ 1.17
LINC00643-205ENST00000623219 UBAP1LF5GYI3 381 aa22.34■■□□□ 1.17
LINC00643-205ENST00000623219 NKTRP30414 1462 aaKnown RBP22.33■■□□□ 1.16
LINC00643-205ENST00000623219 NRXN3Q9Y4C0 1643 aa22.31■■□□□ 1.16
LINC00643-205ENST00000623219 PPLO60437 1756 aa22.3■■□□□ 1.16
LINC00643-205ENST00000623219 CHGAP10645 457 aaKnown RBP22.29■■□□□ 1.16
LINC00643-205ENST00000623219 HDGFP51858 240 aaKnown RBP22.29■■□□□ 1.16
LINC00643-205ENST00000623219 NEXMIFQ5QGS0 1516 aa22.29■■□□□ 1.16
LINC00643-205ENST00000623219 SETBP1Q9Y6X0 1596 aa22.28■■□□□ 1.16
LINC00643-205ENST00000623219 PPP1R15AO75807 674 aaPredicted RBP22.27■■□□□ 1.16
LINC00643-205ENST00000623219 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.27■■□□□ 1.16
LINC00643-205ENST00000623219 TOM1O60784 492 aa22.26■■□□□ 1.15
LINC00643-205ENST00000623219 TRIM52Q96A61 297 aa22.25■■□□□ 1.15
LINC00643-205ENST00000623219 SLC26A8Q96RN1 970 aa22.25■■□□□ 1.15
LINC00643-205ENST00000623219 IFT172Q9UG01 1749 aa22.24■■□□□ 1.15
LINC00643-205ENST00000623219 ADAMTS13Q76LX8 1427 aa22.23■■□□□ 1.15
LINC00643-205ENST00000623219 SETD1AO15047 1707 aaKnown RBP22.23■■□□□ 1.15
LINC00643-205ENST00000623219 XRN1Q8IZH2 1706 aaKnown RBP22.23■■□□□ 1.15
LINC00643-205ENST00000623219 BCANQ96GW7 911 aa22.22■■□□□ 1.15
LINC00643-205ENST00000623219 KCNA6P17658 529 aa22.21■■□□□ 1.15
LINC00643-205ENST00000623219 SLC4A1APQ9BWU0 796 aaKnown RBP22.2■■□□□ 1.14
LINC00643-205ENST00000623219 PIK3R4Q99570 1358 aa22.19■■□□□ 1.14
LINC00643-205ENST00000623219 SCAF1Q9H7N4 1312 aaKnown RBP22.18■■□□□ 1.14
LINC00643-205ENST00000623219 TMEM94Q12767 1356 aa22.17■■□□□ 1.14
LINC00643-205ENST00000623219 ROBO1Q9Y6N7 1651 aa22.17■■□□□ 1.14
LINC00643-205ENST00000623219 SETD5Q9C0A6 1442 aa22.16■■□□□ 1.14
LINC00643-205ENST00000623219 ACIN1Q9UKV3 1341 aaKnown RBP22.16■■□□□ 1.14
LINC00643-205ENST00000623219 PIP4K2BP78356 416 aa22.16■■□□□ 1.14
LINC00643-205ENST00000623219 NUTM2DQ5VT03 806 aaPredicted RBP22.16■■□□□ 1.14
LINC00643-205ENST00000623219 TBX22Q9Y458 520 aa22.16■■□□□ 1.14
LINC00643-205ENST00000623219 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.15■■□□□ 1.14
LINC00643-205ENST00000623219 SENP3Q9H4L4 574 aaPredicted RBP22.15■■□□□ 1.14
LINC00643-205ENST00000623219 ZNF326Q5BKZ1 582 aaKnown RBP22.14■■□□□ 1.13
LINC00643-205ENST00000623219 PROSER2Q86WR7 435 aaPredicted RBP22.11■■□□□ 1.13
LINC00643-205ENST00000623219 CCDC144AA2RUR9 1427 aa22.11■■□□□ 1.13
LINC00643-205ENST00000623219 NCOA3Q9Y6Q9 1424 aa22.1■■□□□ 1.13
LINC00643-205ENST00000623219 MSH6P52701 1360 aa22.09■■□□□ 1.13
LINC00643-205ENST00000623219 RAB3GAP2Q9H2M9 1393 aa22.09■■□□□ 1.13
LINC00643-205ENST00000623219 NALCNQ8IZF0 1738 aa22.09■■□□□ 1.13
LINC00643-205ENST00000623219 PTPRUQ92729 1446 aa22.08■■□□□ 1.13
LINC00643-205ENST00000623219 MPHOSPH9Q99550 1183 aa22.08■■□□□ 1.13
LINC00643-205ENST00000623219 HSPA1LP34931 641 aa22.07■■□□□ 1.12
LINC00643-205ENST00000623219 MED1Q15648 1581 aaPredicted RBP22.07■■□□□ 1.12
LINC00643-205ENST00000623219 PHLPP1O60346 1717 aa22.06■■□□□ 1.12
LINC00643-205ENST00000623219 FOXD1Q16676 465 aa22.05■■□□□ 1.12
LINC00643-205ENST00000623219 FAM135BQ49AJ0 1406 aa22.04■■□□□ 1.12
LINC00643-205ENST00000623219 SPATA31E1Q6ZUB1 1445 aa22.04■■□□□ 1.12
LINC00643-205ENST00000623219 RPGRIP1LQ68CZ1 1315 aa22.04■■□□□ 1.12
LINC00643-205ENST00000623219 RBM33Q96EV2 1170 aaKnown RBP22.03■■□□□ 1.12
LINC00643-205ENST00000623219 KNDC1Q76NI1 1749 aa22.03■■□□□ 1.12
LINC00643-205ENST00000623219 DISP3Q9P2K9 1392 aa22.02■■□□□ 1.12
LINC00643-205ENST00000623219 LAMC1P11047 1609 aa22.02■■□□□ 1.11
LINC00643-205ENST00000623219 METP08581 1390 aa22.01■■□□□ 1.11
LINC00643-205ENST00000623219 VGFO15240 615 aaPredicted RBP22■■□□□ 1.11
LINC00643-205ENST00000623219 DCCP43146 1447 aa21.99■■□□□ 1.11
LINC00643-205ENST00000623219 PRAG1Q86YV5 1406 aa21.99■■□□□ 1.11
LINC00643-205ENST00000623219 AMOTL2Q9Y2J4 779 aa21.99■■□□□ 1.11
LINC00643-205ENST00000623219 PTCH1Q13635 1447 aa21.97■■□□□ 1.11
LINC00643-205ENST00000623219 COL16A1Q07092 1604 aaPredicted RBP21.96■■□□□ 1.11
LINC00643-205ENST00000623219 ANKRD30BQ9BXX2 1392 aa21.95■■□□□ 1.1
LINC00643-205ENST00000623219 NHSL1Q5SYE7 1610 aa21.95■■□□□ 1.1
LINC00643-205ENST00000623219 AHDC1Q5TGY3 1603 aaPredicted RBP21.95■■□□□ 1.1
LINC00643-205ENST00000623219 C14orf37Q86TY3 774 aa21.94■■□□□ 1.1
LINC00643-205ENST00000623219 MYOM2P54296 1465 aa21.93■■□□□ 1.1
LINC00643-205ENST00000623219 ADGRL3Q9HAR2 1447 aa21.93■■□□□ 1.1
LINC00643-205ENST00000623219 PIK3C2GO75747 1445 aa21.92■■□□□ 1.1
LINC00643-205ENST00000623219 ASXL1Q8IXJ9 1541 aa21.91■■□□□ 1.1
LINC00643-205ENST00000623219 C19orf44Q9H6X5 657 aa21.91■■□□□ 1.1
LINC00643-205ENST00000623219 SLAIN2Q9P270 581 aa21.91■■□□□ 1.1
LINC00643-205ENST00000623219 SHPRHQ149N8 1683 aa21.91■■□□□ 1.1
LINC00643-205ENST00000623219 HRCP23327 699 aa21.9■■□□□ 1.1
LINC00643-205ENST00000623219 CADPS2Q86UW7 1296 aa21.9■■□□□ 1.1
LINC00643-205ENST00000623219 NRXN1Q9ULB1 1477 aa21.89■■□□□ 1.09
LINC00643-205ENST00000623219 ATF3P18847 181 aa21.88■■□□□ 1.09
LINC00643-205ENST00000623219 RGL3Q3MIN7 710 aa21.88■■□□□ 1.09
LINC00643-205ENST00000623219 ADGRF5Q8IZF2 1346 aa21.87■■□□□ 1.09
LINC00643-205ENST00000623219 CDC42BPGQ6DT37 1551 aa21.87■■□□□ 1.09
LINC00643-205ENST00000623219 MST1RQ04912 1400 aa21.86■■□□□ 1.09
LINC00643-205ENST00000623219 TECPR2O15040 1411 aa21.84■■□□□ 1.09
LINC00643-205ENST00000623219 ROBO2Q9HCK4 1378 aa21.84■■□□□ 1.09
LINC00643-205ENST00000623219 ILDR2Q71H61 639 aa21.81■■□□□ 1.08
LINC00643-205ENST00000623219 FMN2Q9NZ56 1722 aa21.8■■□□□ 1.08
LINC00643-205ENST00000623219 SOCS7O14512 581 aa21.79■■□□□ 1.08
LINC00643-205ENST00000623219 LRPPRCP42704 1394 aaKnown RBP21.78■■□□□ 1.08
LINC00643-205ENST00000623219 YTHDC2Q9H6S0 1430 aaKnown RBP21.77■■□□□ 1.08
LINC00643-205ENST00000623219 RGPD8O14715 1765 aaPredicted RBP21.76■■□□□ 1.07
LINC00643-205ENST00000623219 JCADQ9P266 1359 aa21.76■■□□□ 1.07
LINC00643-205ENST00000623219 KIAA1210Q9ULL0 1709 aa21.75■■□□□ 1.07
LINC00643-205ENST00000623219 BRINP3Q76B58 766 aa21.75■■□□□ 1.07
LINC00643-205ENST00000623219 C1orf167Q5SNV9 1468 aa21.75■■□□□ 1.07
LINC00643-205ENST00000623219 ADGRB1O14514 1584 aa21.74■■□□□ 1.07
LINC00643-205ENST00000623219 PHF23Q9BUL5 403 aaPredicted RBP21.74■■□□□ 1.07
LINC00643-205ENST00000623219 ABCC11Q96J66 1382 aa21.74■■□□□ 1.07
LINC00643-205ENST00000623219 KIF1AQ12756 1690 aa21.73■■□□□ 1.07
LINC00643-205ENST00000623219 ARHGEF28Q8N1W1 1705 aaKnown RBP21.73■■□□□ 1.07
LINC00643-205ENST00000623219 DLC1Q96QB1 1528 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms