RNA–Protein interactions for RNA: ENST00000617585.1

ARHGEF1-223, Transcript of Rho guanine nucleotide exchange factor 1, human

TSL 2

Gene ARHGEF1, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF1-223	ENST00000617585	HDGF	P51858	240 aa	Known RBP	33.84	■■■■□ 3.01
ARHGEF1-223	ENST00000617585	PLEKHG1	Q9ULL1	1385 aa		33.83	■■■■□ 3.01
ARHGEF1-223	ENST00000617585	KCNA6	P17658	529 aa		33.79	■■■■□ 3
ARHGEF1-223	ENST00000617585	NWD1	Q149M9	1564 aa		33.78	■■■■□ 3
ARHGEF1-223	ENST00000617585	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	33.78	■■■■□ 3
ARHGEF1-223	ENST00000617585	SLC26A8	Q96RN1	970 aa		33.78	■■■■□ 3
ARHGEF1-223	ENST00000617585	CHD2	O14647	1828 aa	Known RBP	33.74	■■■□□ 2.99
ARHGEF1-223	ENST00000617585	CHGA	P10645	457 aa	Known RBP	33.73	■■■□□ 2.99
ARHGEF1-223	ENST00000617585	TRPM2	O94759	1503 aa		33.73	■■■□□ 2.99
ARHGEF1-223	ENST00000617585	NKTR	P30414	1462 aa	Known RBP	33.71	■■■□□ 2.99
ARHGEF1-223	ENST00000617585	TBX22	Q9Y458	520 aa		33.7	■■■□□ 2.99
ARHGEF1-223	ENST00000617585	PPP1R15A	O75807	674 aa	Predicted RBP	33.69	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	PIP4K2B	P78356	416 aa		33.69	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	DIP2A	Q14689	1571 aa		33.68	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	CLTCL1	P53675	1640 aa		33.68	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	ADAMTS13	Q76LX8	1427 aa		33.67	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	BCAN	Q96GW7	911 aa		33.65	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	TMEM94	Q12767	1356 aa		33.64	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	KIF1B	O60333	1816 aa		33.64	■■■□□ 2.98
ARHGEF1-223	ENST00000617585	SCAF1	Q9H7N4	1312 aa	Known RBP	33.63	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	HSPA1L	P34931	641 aa		33.62	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	TRIM52	Q96A61	297 aa		33.62	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	PIK3R4	Q99570	1358 aa		33.61	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	PROSER2	Q86WR7	435 aa	Predicted RBP	33.59	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	NUTM2D	Q5VT03	806 aa	Predicted RBP	33.58	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	NRXN3	Q9Y4C0	1643 aa		33.57	■■■□□ 2.97
ARHGEF1-223	ENST00000617585	SETBP1	Q9Y6X0	1596 aa		33.57	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	SLC4A1AP	Q9BWU0	796 aa	Known RBP	33.57	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	NEXMIF	Q5QGS0	1516 aa		33.55	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	DISP3	Q9P2K9	1392 aa		33.54	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	NCOA3	Q9Y6Q9	1424 aa		33.53	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	SENP3	Q9H4L4	574 aa	Predicted RBP	33.52	■■■□□ 2.96
ARHGEF1-223	ENST00000617585	FAM135B	Q49AJ0	1406 aa		33.51	■■■□□ 2.95
ARHGEF1-223	ENST00000617585	ACIN1	Q9UKV3	1341 aa	Known RBP	33.5	■■■□□ 2.95
ARHGEF1-223	ENST00000617585	ZNF326	Q5BKZ1	582 aa	Known RBP	33.49	■■■□□ 2.95
ARHGEF1-223	ENST00000617585	RBM33	Q96EV2	1170 aa	Known RBP	33.47	■■■□□ 2.95
ARHGEF1-223	ENST00000617585	MSH6	P52701	1360 aa		33.45	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	PTPRU	Q92729	1446 aa		33.45	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	XRN1	Q8IZH2	1706 aa	Known RBP	33.43	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	SETD5	Q9C0A6	1442 aa		33.42	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	MPHOSPH9	Q99550	1183 aa		33.41	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	RPGRIP1L	Q68CZ1	1315 aa		33.41	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	AMOTL2	Q9Y2J4	779 aa		33.4	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	PPL	O60437	1756 aa		33.39	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	ROBO1	Q9Y6N7	1651 aa		33.39	■■■□□ 2.94
ARHGEF1-223	ENST00000617585	MED1	Q15648	1581 aa	Predicted RBP	33.37	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	VGF	O15240	615 aa	Predicted RBP	33.36	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	SETD1A	O15047	1707 aa	Known RBP	33.36	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	33.36	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	MET	P08581	1390 aa		33.35	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	FOXD1	Q16676	465 aa		33.35	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	SLAIN2	Q9P270	581 aa		33.33	■■■□□ 2.93
ARHGEF1-223	ENST00000617585	CCDC144A	A2RUR9	1427 aa		33.32	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	C19orf44	Q9H6X5	657 aa		33.32	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	ILDR2	Q71H61	639 aa		33.31	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	SPATA31E1	Q6ZUB1	1445 aa		33.29	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	RAB3GAP2	Q9H2M9	1393 aa		33.27	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	IFT172	Q9UG01	1749 aa		33.27	■■■□□ 2.92
ARHGEF1-223	ENST00000617585	CADPS2	Q86UW7	1296 aa		33.26	■■■□□ 2.91
ARHGEF1-223	ENST00000617585	DCC	P43146	1447 aa		33.26	■■■□□ 2.91
ARHGEF1-223	ENST00000617585	PRAG1	Q86YV5	1406 aa		33.24	■■■□□ 2.91
ARHGEF1-223	ENST00000617585	C14orf37	Q86TY3	774 aa		33.23	■■■□□ 2.91
ARHGEF1-223	ENST00000617585	ATF3	P18847	181 aa		33.19	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	PHLPP1	O60346	1717 aa		33.19	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	PTCH1	Q13635	1447 aa		33.19	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	HRC	P23327	699 aa		33.18	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	ANKRD30B	Q9BXX2	1392 aa		33.18	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	ADGRL3	Q9HAR2	1447 aa		33.15	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	NALCN	Q8IZF0	1738 aa		33.14	■■■□□ 2.9
ARHGEF1-223	ENST00000617585	ADGRF5	Q8IZF2	1346 aa		33.13	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	COL16A1	Q07092	1604 aa	Predicted RBP	33.13	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	AHDC1	Q5TGY3	1603 aa	Predicted RBP	33.13	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	RGL3	Q3MIN7	710 aa		33.12	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	MST1R	Q04912	1400 aa		33.1	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	ROBO2	Q9HCK4	1378 aa		33.08	■■■□□ 2.89
ARHGEF1-223	ENST00000617585	SOCS7	O14512	581 aa		33.07	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	PIK3C2G	O75747	1445 aa		33.07	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	BRINP3	Q76B58	766 aa		33.05	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	JCAD	Q9P266	1359 aa		33.04	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	NRXN1	Q9ULB1	1477 aa		33.03	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	ASXL1	Q8IXJ9	1541 aa		33.02	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	TECPR2	O15040	1411 aa		33.02	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	MYOM2	P54296	1465 aa		33.01	■■■□□ 2.88
ARHGEF1-223	ENST00000617585	PHF23	Q9BUL5	403 aa	Predicted RBP	33.01	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	KNDC1	Q76NI1	1749 aa		33	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	NHSL1	Q5SYE7	1610 aa		33	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	SHPRH	Q149N8	1683 aa		32.97	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	LRPPRC	P42704	1394 aa	Known RBP	32.96	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	ABCC11	Q96J66	1382 aa		32.96	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	LAMC1	P11047	1609 aa		32.95	■■■□□ 2.87
ARHGEF1-223	ENST00000617585	C1orf167	Q5SNV9	1468 aa		32.94	■■■□□ 2.86
ARHGEF1-223	ENST00000617585	RGS17	Q9UGC6	210 aa	Predicted RBP	32.94	■■■□□ 2.86
ARHGEF1-223	ENST00000617585	C14orf93	Q9H972	538 aa	Known RBP	32.93	■■■□□ 2.86
ARHGEF1-223	ENST00000617585	CDC42BPG	Q6DT37	1551 aa		32.91	■■■□□ 2.86
ARHGEF1-223	ENST00000617585	SPATA31A6	Q5VVP1	1343 aa		32.9	■■■□□ 2.86
ARHGEF1-223	ENST00000617585	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.88	■■■□□ 2.85
ARHGEF1-223	ENST00000617585	SIRT1	Q96EB6	747 aa		32.88	■■■□□ 2.85
ARHGEF1-223	ENST00000617585	TMEM132E	Q6IEE7	984 aa		32.87	■■■□□ 2.85
ARHGEF1-223	ENST00000617585	STAC3	Q96MF2	364 aa		32.83	■■■□□ 2.85
ARHGEF1-223	ENST00000617585	STK26	Q9P289	416 aa		32.83	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms