RNA–Protein interactions for RNA: ENST00000615798.4

COL12A1-211, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL12A1, Length 11,579 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-211ENST00000615798 SUPT6HQ7KZ85 1726 aaKnown RBP11.31□□□□□ -0.6
COL12A1-211ENST00000615798 HFM1A2PYH4 1435 aa11.31□□□□□ -0.6
COL12A1-211ENST00000615798 PKD2Q13563 968 aa11.31□□□□□ -0.6
COL12A1-211ENST00000615798 WASHC2AQ641Q2 1341 aa11.3□□□□□ -0.6
COL12A1-211ENST00000615798 WASHC2CQ9Y4E1 1318 aa11.3□□□□□ -0.6
COL12A1-211ENST00000615798 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
COL12A1-211ENST00000615798 BIVM-ERCC5R4GMW8 1640 aa11.3□□□□□ -0.6
COL12A1-211ENST00000615798 TPD52L1Q16890 204 aaPredicted RBP11.3□□□□□ -0.6
COL12A1-211ENST00000615798 AXDND1Q5T1B0 1012 aaPredicted RBP11.3□□□□□ -0.6
COL12A1-211ENST00000615798 CCDC144AA2RUR9 1427 aa11.3□□□□□ -0.6
COL12A1-211ENST00000615798 CALCOCO1Q9P1Z2 691 aa11.3□□□□□ -0.6
COL12A1-211ENST00000615798 WDR66Q8TBY9 1149 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 CCDC39Q9UFE4 941 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 RCAN3Q9UKA8 241 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 CC2D2AQ9P2K1 1620 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 IPO8O15397 1037 aaKnown RBP11.29□□□□□ -0.6
COL12A1-211ENST00000615798 FAM107BQ9H098 131 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 FYB1O15117 783 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 EFCAB2Q5VUJ9 269 aa11.29□□□□□ -0.6
COL12A1-211ENST00000615798 CCAR1Q8IX12 1150 aaKnown RBP11.28□□□□□ -0.6
COL12A1-211ENST00000615798 PAF1Q8N7H5 531 aa11.28□□□□□ -0.6
COL12A1-211ENST00000615798 CNTLNQ9NXG0 1405 aa11.28□□□□□ -0.6
COL12A1-211ENST00000615798 ARAP1Q96P48 1450 aa11.28□□□□□ -0.6
COL12A1-211ENST00000615798 CCDC175P0C221 793 aa11.28□□□□□ -0.6
COL12A1-211ENST00000615798 DNMBPQ6XZF7 1577 aa11.27□□□□□ -0.6
COL12A1-211ENST00000615798 L3MBTL2Q969R5 705 aa11.27□□□□□ -0.61
COL12A1-211ENST00000615798 RASSF8Q8NHQ8 419 aa11.27□□□□□ -0.61
COL12A1-211ENST00000615798 TDRD9Q8NDG6 1382 aaKnown RBP11.27□□□□□ -0.61
COL12A1-211ENST00000615798 NF2P35240 595 aa11.27□□□□□ -0.61
COL12A1-211ENST00000615798 SEPT6Q14141 434 aa11.27□□□□□ -0.61
COL12A1-211ENST00000615798 RBM25P49756 843 aaKnown RBP11.27□□□□□ -0.61
COL12A1-211ENST00000615798 WWC1Q8IX03 1113 aa11.27□□□□□ -0.61
COL12A1-211ENST00000615798 PRKRIP1Q9H875 184 aaPredicted RBP11.27□□□□□ -0.61
COL12A1-211ENST00000615798 R3HCC1Q9Y3T6 440 aaKnown RBP11.27□□□□□ -0.61
COL12A1-211ENST00000615798 NCOA2Q15596 1464 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 GTF2A1P52655 376 aaPredicted RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 THOC2Q8NI27 1593 aaKnown RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 RBM28Q9NW13 759 aaKnown RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 ENOX2Q16206 610 aaKnown RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 TSHZ2Q9NRE2 1034 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 CT47B1P0C2W7 299 aaPredicted RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 CREBRFQ8IUR6 639 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 PMFBP1Q8TBY8 1022 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 BECN2A8MW95 431 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 BBXQ8WY36 941 aaPredicted RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 HMGB1P1B2RPK0 211 aaPredicted RBP11.26□□□□□ -0.61
COL12A1-211ENST00000615798 CENPHQ9H3R5 247 aa11.26□□□□□ -0.61
COL12A1-211ENST00000615798 SWAP70Q9UH65 585 aa11.25□□□□□ -0.61
COL12A1-211ENST00000615798 EZRP15311 586 aaKnown RBP11.25□□□□□ -0.61
COL12A1-211ENST00000615798 RGL3Q3MIN7 710 aa11.25□□□□□ -0.61
COL12A1-211ENST00000615798 CCP110O43303 1012 aa11.25□□□□□ -0.61
COL12A1-211ENST00000615798 EIF3JO75822 258 aaKnown RBP11.25□□□□□ -0.61
COL12A1-211ENST00000615798 GOLGA2Q08379 1002 aa11.25□□□□□ -0.61
COL12A1-211ENST00000615798 ANKRD20A12PQ8NF67 263 aa11.25□□□□□ -0.61
COL12A1-211ENST00000615798 TICAM2Q86XR7 235 aa11.24□□□□□ -0.61
COL12A1-211ENST00000615798 USP47Q96K76 1375 aa11.24□□□□□ -0.61
COL12A1-211ENST00000615798 RWDD1Q9H446 243 aaPredicted RBP11.24□□□□□ -0.61
COL12A1-211ENST00000615798 CPSF2Q9P2I0 782 aaKnown RBP11.24□□□□□ -0.61
COL12A1-211ENST00000615798 CCDC173Q0VFZ6 552 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 PSMD1Q99460 953 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 KIAA1328Q86T90 577 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 IFT57Q9NWB7 429 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 ATP6V1DQ9Y5K8 247 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 TNNT1P13805 278 aa11.23□□□□□ -0.61
COL12A1-211ENST00000615798 DNAJC2Q99543 621 aaKnown RBP11.22□□□□□ -0.61
COL12A1-211ENST00000615798 GRIN2BQ13224 1484 aa11.22□□□□□ -0.61
COL12A1-211ENST00000615798 PLEKHH2Q8IVE3 1493 aa11.22□□□□□ -0.61
COL12A1-211ENST00000615798 FAM114A1Q8IWE2 563 aa11.22□□□□□ -0.61
COL12A1-211ENST00000615798 IPO4Q8TEX9 1081 aaKnown RBP11.22□□□□□ -0.61
COL12A1-211ENST00000615798 SLC26A8Q96RN1 970 aa11.22□□□□□ -0.61
COL12A1-211ENST00000615798 ERLIN2O94905 339 aa11.21□□□□□ -0.61
COL12A1-211ENST00000615798 ROCK1Q13464 1354 aa11.21□□□□□ -0.61
COL12A1-211ENST00000615798 AKNAQ7Z591 1439 aa11.21□□□□□ -0.61
COL12A1-211ENST00000615798 CENPQQ7L2Z9 268 aaPredicted RBP11.21□□□□□ -0.62
COL12A1-211ENST00000615798 ANKRD18AQ8IVF6 992 aa11.21□□□□□ -0.62
COL12A1-211ENST00000615798 ABCA10Q8WWZ4 1543 aa11.21□□□□□ -0.62
COL12A1-211ENST00000615798 CAVIN1Q6NZI2 390 aaKnown RBP11.21□□□□□ -0.62
COL12A1-211ENST00000615798 CEP63Q96MT8 703 aa11.21□□□□□ -0.62
COL12A1-211ENST00000615798 BRD4O60885 1362 aaPredicted RBP11.21□□□□□ -0.62
COL12A1-211ENST00000615798 ST18O60284 1047 aa11.21□□□□□ -0.62
COL12A1-211ENST00000615798 CGNL1Q0VF96 1302 aa11.2□□□□□ -0.62
COL12A1-211ENST00000615798 SHTN1A0MZ66 631 aa11.2□□□□□ -0.62
COL12A1-211ENST00000615798 TTLL5Q6EMB2 1281 aa11.2□□□□□ -0.62
COL12A1-211ENST00000615798 HDAC5Q9UQL6 1122 aa11.2□□□□□ -0.62
COL12A1-211ENST00000615798 MICALCLQ6ZW33 695 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 DAAM2Q86T65 1068 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 PDCL2Q8N4E4 241 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 KCNH8Q96L42 1107 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 RABEP1Q15276 862 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 CCDC7Q96M83 1385 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 TDO2P48775 406 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 SF3A1Q15459 793 aaKnown RBP11.19□□□□□ -0.62
COL12A1-211ENST00000615798 CT47A1Q5JQC4 288 aaPredicted RBP11.19□□□□□ -0.62
COL12A1-211ENST00000615798 DDX49Q9Y6V7 483 aaKnown RBP11.19□□□□□ -0.62
COL12A1-211ENST00000615798 POLR3GO15318 223 aaPredicted RBP11.19□□□□□ -0.62
COL12A1-211ENST00000615798 HOOK1Q9UJC3 728 aaKnown RBP11.19□□□□□ -0.62
COL12A1-211ENST00000615798 ERICH4A6NGS2 130 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 LAMC3Q9Y6N6 1575 aa11.19□□□□□ -0.62
COL12A1-211ENST00000615798 RNF20Q5VTR2 975 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms