RNA–Protein interactions for RNA: ENST00000615798.4

COL12A1-211, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL12A1, Length 11,579 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-211ENST00000615798 MYT1Q01538 1121 aa15.76■□□□□ 0.11
COL12A1-211ENST00000615798 PELP1Q8IZL8 1130 aaKnown RBP15.75■□□□□ 0.11
COL12A1-211ENST00000615798 NISCHQ9Y2I1 1504 aa15.73■□□□□ 0.11
COL12A1-211ENST00000615798 ERICH6Q7L0X2 663 aa15.02□□□□□ -0.01
COL12A1-211ENST00000615798 TTBK1Q5TCY1 1321 aaPredicted RBP14.94□□□□□ -0.02
COL12A1-211ENST00000615798 CCER1Q8TC90 406 aaPredicted RBP14.89□□□□□ -0.03
COL12A1-211ENST00000615798 YTHDC1Q96MU7 727 aaKnown RBP14.71□□□□□ -0.05
COL12A1-211ENST00000615798 CENPBP07199 599 aaPredicted RBP14.44□□□□□ -0.1
COL12A1-211ENST00000615798 DCAF8L2P0C7V8 631 aa14.41□□□□□ -0.1
COL12A1-211ENST00000615798 SUPT5HO00267 1087 aaKnown RBP14.17□□□□□ -0.14
COL12A1-211ENST00000615798 NEFLP07196 543 aa14.13□□□□□ -0.15
COL12A1-211ENST00000615798 DAXXQ9UER7 740 aaPredicted RBP14.02□□□□□ -0.16
COL12A1-211ENST00000615798 SHROOM4Q9ULL8 1493 aa13.92□□□□□ -0.18
COL12A1-211ENST00000615798 RTL5Q5HYW3 569 aaPredicted RBP13.89□□□□□ -0.19
COL12A1-211ENST00000615798 ZEB1P37275 1124 aaPredicted RBP13.88□□□□□ -0.19
COL12A1-211ENST00000615798 GLIPR1L2Q4G1C9 344 aa13.87□□□□□ -0.19
COL12A1-211ENST00000615798 RANGAP1P46060 587 aaPredicted RBP13.82□□□□□ -0.2
COL12A1-211ENST00000615798 ZNF316A6NFI3 1004 aaPredicted RBP13.63□□□□□ -0.23
COL12A1-211ENST00000615798 APLP2Q06481 763 aa13.6□□□□□ -0.23
COL12A1-211ENST00000615798 EIF5BO60841 1220 aaKnown RBP13.47□□□□□ -0.25
COL12A1-211ENST00000615798 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
COL12A1-211ENST00000615798 CLSPNQ9HAW4 1339 aa13.44□□□□□ -0.26
COL12A1-211ENST00000615798 PCGF6Q9BYE7 350 aa13.44□□□□□ -0.26
COL12A1-211ENST00000615798 CCDC180Q9P1Z9 1646 aa13.4□□□□□ -0.27
COL12A1-211ENST00000615798 FAM9AQ8IZU1 332 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-211ENST00000615798 TRIM26Q12899 539 aaPredicted RBP13.35□□□□□ -0.27
COL12A1-211ENST00000615798 MYT1LQ9UL68 1186 aa13.29□□□□□ -0.28
COL12A1-211ENST00000615798 HRCP23327 699 aa13.27□□□□□ -0.28
COL12A1-211ENST00000615798 TNNT2P45379 298 aaPredicted RBP13.22□□□□□ -0.29
COL12A1-211ENST00000615798 CHIC1Q5VXU3 224 aa13.2□□□□□ -0.3
COL12A1-211ENST00000615798 ZCCHC6Q5VYS8 1495 aaKnown RBP13.2□□□□□ -0.3
COL12A1-211ENST00000615798 ANP32BQ92688 251 aaKnown RBP13.15□□□□□ -0.3
COL12A1-211ENST00000615798 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
COL12A1-211ENST00000615798 CDK11AQ9UQ88 783 aaPredicted RBP13.07□□□□□ -0.32
COL12A1-211ENST00000615798 UBTFP17480 764 aaKnown RBP13.04□□□□□ -0.32
COL12A1-211ENST00000615798 CDK11BP21127 795 aaKnown RBP13.03□□□□□ -0.32
COL12A1-211ENST00000615798 POLR3GLQ9BT43 218 aa13.01□□□□□ -0.33
COL12A1-211ENST00000615798 ANP32AP39687 249 aaKnown RBP12.98□□□□□ -0.33
COL12A1-211ENST00000615798 DCAF1Q9Y4B6 1507 aa12.97□□□□□ -0.33
COL12A1-211ENST00000615798 NCLP19338 710 aaKnown RBP12.97□□□□□ -0.33
COL12A1-211ENST00000615798 TRIM44Q96DX7 344 aaPredicted RBP12.93□□□□□ -0.34
COL12A1-211ENST00000615798 ZNF326Q5BKZ1 582 aaKnown RBP12.9□□□□□ -0.34
COL12A1-211ENST00000615798 SLC24A1O60721 1099 aa12.86□□□□□ -0.35
COL12A1-211ENST00000615798 GTF3C3Q9Y5Q9 886 aa12.81□□□□□ -0.36
COL12A1-211ENST00000615798 ZBTB47Q9UFB7 747 aaPredicted RBP12.8□□□□□ -0.36
COL12A1-211ENST00000615798 LOC105371045A0A1W2PR82 267 aa12.72□□□□□ -0.37
COL12A1-211ENST00000615798 BCANQ96GW7 911 aa12.71□□□□□ -0.38
COL12A1-211ENST00000615798 DIEXFQ68CQ4 756 aaKnown RBP12.7□□□□□ -0.38
COL12A1-211ENST00000615798 CALRP27797 417 aaKnown RBP12.7□□□□□ -0.38
COL12A1-211ENST00000615798 EEA1Q15075 1411 aa12.68□□□□□ -0.38
COL12A1-211ENST00000615798 NACADO15069 1562 aa12.67□□□□□ -0.38
COL12A1-211ENST00000615798 PTMSP20962 102 aa12.63□□□□□ -0.39
COL12A1-211ENST00000615798 HSP90AA1P07900 732 aaKnown RBP12.63□□□□□ -0.39
COL12A1-211ENST00000615798 ERICH6BQ5W0A0 696 aa12.63□□□□□ -0.39
COL12A1-211ENST00000615798 MYO15BQ96JP2 1530 aa12.62□□□□□ -0.39
COL12A1-211ENST00000615798 NBR1Q14596 966 aa12.61□□□□□ -0.39
COL12A1-211ENST00000615798 ABCC9O60706 1549 aa12.6□□□□□ -0.39
COL12A1-211ENST00000615798 NPM2Q86SE8 214 aaKnown RBP12.6□□□□□ -0.39
COL12A1-211ENST00000615798 BCL11AQ9H165 835 aa12.6□□□□□ -0.39
COL12A1-211ENST00000615798 SCRIBQ14160 1630 aa12.6□□□□□ -0.39
COL12A1-211ENST00000615798 NAP1L5Q96NT1 182 aaPredicted RBP12.6□□□□□ -0.39
COL12A1-211ENST00000615798 RB1CC1Q8TDY2 1594 aa12.59□□□□□ -0.39
COL12A1-211ENST00000615798 ANP32EQ9BTT0 268 aa12.58□□□□□ -0.39
COL12A1-211ENST00000615798 NEFMP07197 916 aa12.58□□□□□ -0.4
COL12A1-211ENST00000615798 ATP1B4Q9UN42 357 aaPredicted RBP12.56□□□□□ -0.4
COL12A1-211ENST00000615798 AMER1Q5JTC6 1135 aaPredicted RBP12.55□□□□□ -0.4
COL12A1-211ENST00000615798 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
COL12A1-211ENST00000615798 ACIN1Q9UKV3 1341 aaKnown RBP12.54□□□□□ -0.4
COL12A1-211ENST00000615798 CSRNP3Q8WYN3 585 aa12.53□□□□□ -0.4
COL12A1-211ENST00000615798 CANXP27824 592 aaKnown RBP12.51□□□□□ -0.41
COL12A1-211ENST00000615798 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
COL12A1-211ENST00000615798 TNNT3P45378 269 aaPredicted RBP12.47□□□□□ -0.41
COL12A1-211ENST00000615798 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
COL12A1-211ENST00000615798 BAZ1AQ9NRL2 1556 aaPredicted RBP12.45□□□□□ -0.42
COL12A1-211ENST00000615798 ARXQ96QS3 562 aa12.44□□□□□ -0.42
COL12A1-211ENST00000615798 RSF1Q96T23 1441 aaPredicted RBP12.44□□□□□ -0.42
COL12A1-211ENST00000615798 ANP32CO43423 234 aa12.42□□□□□ -0.42
COL12A1-211ENST00000615798 DNTTIP2Q5QJE6 756 aaKnown RBP12.42□□□□□ -0.42
COL12A1-211ENST00000615798 PPARGC1BQ86YN6 1023 aaKnown RBP12.41□□□□□ -0.42
COL12A1-211ENST00000615798 PTMAP06454 111 aaKnown RBP12.4□□□□□ -0.42
COL12A1-211ENST00000615798 CNGB1Q14028 1251 aaPredicted RBP12.39□□□□□ -0.43
COL12A1-211ENST00000615798 DDRGK1Q96HY6 314 aa12.39□□□□□ -0.43
COL12A1-211ENST00000615798 SLC4A1APQ9BWU0 796 aaKnown RBP12.38□□□□□ -0.43
COL12A1-211ENST00000615798 GOLGA3Q08378 1498 aa12.38□□□□□ -0.43
COL12A1-211ENST00000615798 GOLGA6L22H0YM25 854 aa12.36□□□□□ -0.43
COL12A1-211ENST00000615798 CHAF1AQ13111 956 aaPredicted RBP12.34□□□□□ -0.43
COL12A1-211ENST00000615798 BECN1Q14457 450 aa12.32□□□□□ -0.44
COL12A1-211ENST00000615798 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
COL12A1-211ENST00000615798 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
COL12A1-211ENST00000615798 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
COL12A1-211ENST00000615798 ITGAEP38570 1179 aa12.29□□□□□ -0.44
COL12A1-211ENST00000615798 CLIP1P30622 1438 aa12.27□□□□□ -0.45
COL12A1-211ENST00000615798 APPP05067 770 aa12.27□□□□□ -0.45
COL12A1-211ENST00000615798 SETQ01105 290 aaPredicted RBP12.26□□□□□ -0.45
COL12A1-211ENST00000615798 GOLGA6L6A8MZA4 724 aa12.26□□□□□ -0.45
COL12A1-211ENST00000615798 FAM50AQ14320 339 aaKnown RBP12.26□□□□□ -0.45
COL12A1-211ENST00000615798 CEP162Q5TB80 1403 aa12.24□□□□□ -0.45
COL12A1-211ENST00000615798 PODXL2Q9NZ53 605 aa12.23□□□□□ -0.45
COL12A1-211ENST00000615798 PPM1GO15355 546 aaPredicted RBP12.22□□□□□ -0.45
COL12A1-211ENST00000615798 WRNQ14191 1432 aaPredicted RBP eCLIP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms