RNA–Protein interactions for RNA: ENST00000612369.4

VCX3A-203, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 812 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-203ENST00000612369 PLEKHG1Q9ULL1 1385 aa27.43■■□□□ 1.98
VCX3A-203ENST00000612369 PPP1R15AO75807 674 aaPredicted RBP27.42■■□□□ 1.98
VCX3A-203ENST00000612369 SLC26A8Q96RN1 970 aa27.42■■□□□ 1.98
VCX3A-203ENST00000612369 KCNA6P17658 529 aa27.41■■□□□ 1.98
VCX3A-203ENST00000612369 BCANQ96GW7 911 aa27.41■■□□□ 1.98
VCX3A-203ENST00000612369 SPHKAPQ2M3C7 1700 aa27.41■■□□□ 1.98
VCX3A-203ENST00000612369 TRIM52Q96A61 297 aa27.37■■□□□ 1.97
VCX3A-203ENST00000612369 PIP4K2BP78356 416 aa27.36■■□□□ 1.97
VCX3A-203ENST00000612369 SCAF1Q9H7N4 1312 aaKnown RBP27.36■■□□□ 1.97
VCX3A-203ENST00000612369 TBX22Q9Y458 520 aa27.34■■□□□ 1.97
VCX3A-203ENST00000612369 ALKQ9UM73 1620 aa27.32■■□□□ 1.96
VCX3A-203ENST00000612369 NKTRP30414 1462 aaKnown RBP27.32■■□□□ 1.96
VCX3A-203ENST00000612369 TRPM2O94759 1503 aa27.31■■□□□ 1.96
VCX3A-203ENST00000612369 NWD1Q149M9 1564 aa27.31■■□□□ 1.96
VCX3A-203ENST00000612369 SLC4A1APQ9BWU0 796 aaKnown RBP27.3■■□□□ 1.96
VCX3A-203ENST00000612369 XIRP1Q702N8 1843 aaKnown RBP27.3■■□□□ 1.96
VCX3A-203ENST00000612369 PROSER2Q86WR7 435 aaPredicted RBP27.29■■□□□ 1.96
VCX3A-203ENST00000612369 TMEM94Q12767 1356 aa27.29■■□□□ 1.96
VCX3A-203ENST00000612369 DIP2AQ14689 1571 aa27.27■■□□□ 1.96
VCX3A-203ENST00000612369 NUTM2DQ5VT03 806 aaPredicted RBP27.27■■□□□ 1.96
VCX3A-203ENST00000612369 ADAMTS13Q76LX8 1427 aa27.26■■□□□ 1.95
VCX3A-203ENST00000612369 PIK3R4Q99570 1358 aa27.26■■□□□ 1.95
VCX3A-203ENST00000612369 ACIN1Q9UKV3 1341 aaKnown RBP27.26■■□□□ 1.95
VCX3A-203ENST00000612369 CHD2O14647 1828 aaKnown RBP27.26■■□□□ 1.95
VCX3A-203ENST00000612369 HSPA1LP34931 641 aa27.26■■□□□ 1.95
VCX3A-203ENST00000612369 ZNF326Q5BKZ1 582 aaKnown RBP27.26■■□□□ 1.95
VCX3A-203ENST00000612369 CLTCL1P53675 1640 aa27.26■■□□□ 1.95
VCX3A-203ENST00000612369 SENP3Q9H4L4 574 aaPredicted RBP27.25■■□□□ 1.95
VCX3A-203ENST00000612369 KIF1BO60333 1816 aa27.22■■□□□ 1.95
VCX3A-203ENST00000612369 DISP3Q9P2K9 1392 aa27.21■■□□□ 1.95
VCX3A-203ENST00000612369 NCOA3Q9Y6Q9 1424 aa27.17■■□□□ 1.94
VCX3A-203ENST00000612369 SETBP1Q9Y6X0 1596 aa27.17■■□□□ 1.94
VCX3A-203ENST00000612369 MSH6P52701 1360 aa27.16■■□□□ 1.94
VCX3A-203ENST00000612369 NEXMIFQ5QGS0 1516 aa27.16■■□□□ 1.94
VCX3A-203ENST00000612369 RBM33Q96EV2 1170 aaKnown RBP27.15■■□□□ 1.94
VCX3A-203ENST00000612369 FAM135BQ49AJ0 1406 aa27.15■■□□□ 1.94
VCX3A-203ENST00000612369 MPHOSPH9Q99550 1183 aa27.14■■□□□ 1.94
VCX3A-203ENST00000612369 SETD5Q9C0A6 1442 aa27.14■■□□□ 1.93
VCX3A-203ENST00000612369 RPGRIP1LQ68CZ1 1315 aa27.13■■□□□ 1.93
VCX3A-203ENST00000612369 NRXN3Q9Y4C0 1643 aa27.12■■□□□ 1.93
VCX3A-203ENST00000612369 VGFO15240 615 aaPredicted RBP27.11■■□□□ 1.93
VCX3A-203ENST00000612369 AMOTL2Q9Y2J4 779 aa27.11■■□□□ 1.93
VCX3A-203ENST00000612369 FOXD1Q16676 465 aa27.08■■□□□ 1.93
VCX3A-203ENST00000612369 PTPRUQ92729 1446 aa27.07■■□□□ 1.92
VCX3A-203ENST00000612369 CCDC144AA2RUR9 1427 aa27.07■■□□□ 1.92
VCX3A-203ENST00000612369 C14orf37Q86TY3 774 aa27.05■■□□□ 1.92
VCX3A-203ENST00000612369 SLAIN2Q9P270 581 aa27.05■■□□□ 1.92
VCX3A-203ENST00000612369 C19orf44Q9H6X5 657 aa27.04■■□□□ 1.92
VCX3A-203ENST00000612369 METP08581 1390 aa27.03■■□□□ 1.92
VCX3A-203ENST00000612369 XRN1Q8IZH2 1706 aaKnown RBP27.03■■□□□ 1.92
VCX3A-203ENST00000612369 ROBO1Q9Y6N7 1651 aa27.01■■□□□ 1.92
VCX3A-203ENST00000612369 RAB3GAP2Q9H2M9 1393 aa27.01■■□□□ 1.91
VCX3A-203ENST00000612369 CADPS2Q86UW7 1296 aa27.01■■□□□ 1.91
VCX3A-203ENST00000612369 PPLO60437 1756 aa26.99■■□□□ 1.91
VCX3A-203ENST00000612369 MED1Q15648 1581 aaPredicted RBP26.98■■□□□ 1.91
VCX3A-203ENST00000612369 ATF3P18847 181 aa26.98■■□□□ 1.91
VCX3A-203ENST00000612369 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.97■■□□□ 1.91
VCX3A-203ENST00000612369 SPATA31E1Q6ZUB1 1445 aa26.97■■□□□ 1.91
VCX3A-203ENST00000612369 HRCP23327 699 aa26.95■■□□□ 1.9
VCX3A-203ENST00000612369 ILDR2Q71H61 639 aa26.95■■□□□ 1.9
VCX3A-203ENST00000612369 DCCP43146 1447 aa26.95■■□□□ 1.9
VCX3A-203ENST00000612369 ANKRD30BQ9BXX2 1392 aa26.94■■□□□ 1.9
VCX3A-203ENST00000612369 RGL3Q3MIN7 710 aa26.93■■□□□ 1.9
VCX3A-203ENST00000612369 SETD1AO15047 1707 aaKnown RBP26.93■■□□□ 1.9
VCX3A-203ENST00000612369 PTCH1Q13635 1447 aa26.89■■□□□ 1.89
VCX3A-203ENST00000612369 PRAG1Q86YV5 1406 aa26.89■■□□□ 1.89
VCX3A-203ENST00000612369 IFT172Q9UG01 1749 aa26.87■■□□□ 1.89
VCX3A-203ENST00000612369 ADGRL3Q9HAR2 1447 aa26.87■■□□□ 1.89
VCX3A-203ENST00000612369 ADGRF5Q8IZF2 1346 aa26.87■■□□□ 1.89
VCX3A-203ENST00000612369 PHLPP1O60346 1717 aa26.85■■□□□ 1.89
VCX3A-203ENST00000612369 PHF23Q9BUL5 403 aaPredicted RBP26.85■■□□□ 1.89
VCX3A-203ENST00000612369 ROBO2Q9HCK4 1378 aa26.82■■□□□ 1.88
VCX3A-203ENST00000612369 MST1RQ04912 1400 aa26.81■■□□□ 1.88
VCX3A-203ENST00000612369 AHDC1Q5TGY3 1603 aaPredicted RBP26.8■■□□□ 1.88
VCX3A-203ENST00000612369 BRINP3Q76B58 766 aa26.8■■□□□ 1.88
VCX3A-203ENST00000612369 JCADQ9P266 1359 aa26.8■■□□□ 1.88
VCX3A-203ENST00000612369 PIK3C2GO75747 1445 aa26.8■■□□□ 1.88
VCX3A-203ENST00000612369 NALCNQ8IZF0 1738 aa26.79■■□□□ 1.88
VCX3A-203ENST00000612369 SOCS7O14512 581 aa26.79■■□□□ 1.88
VCX3A-203ENST00000612369 COL16A1Q07092 1604 aaPredicted RBP26.79■■□□□ 1.88
VCX3A-203ENST00000612369 MYOM2P54296 1465 aa26.75■■□□□ 1.87
VCX3A-203ENST00000612369 TECPR2O15040 1411 aa26.74■■□□□ 1.87
VCX3A-203ENST00000612369 LRPPRCP42704 1394 aaKnown RBP26.74■■□□□ 1.87
VCX3A-203ENST00000612369 ASXL1Q8IXJ9 1541 aa26.74■■□□□ 1.87
VCX3A-203ENST00000612369 NRXN1Q9ULB1 1477 aa26.74■■□□□ 1.87
VCX3A-203ENST00000612369 ABCC11Q96J66 1382 aa26.72■■□□□ 1.87
VCX3A-203ENST00000612369 C14orf93Q9H972 538 aaKnown RBP26.72■■□□□ 1.87
VCX3A-203ENST00000612369 SPATA31A6Q5VVP1 1343 aa26.69■■□□□ 1.86
VCX3A-203ENST00000612369 C1orf167Q5SNV9 1468 aa26.69■■□□□ 1.86
VCX3A-203ENST00000612369 TMEM132EQ6IEE7 984 aa26.69■■□□□ 1.86
VCX3A-203ENST00000612369 STAC3Q96MF2 364 aa26.69■■□□□ 1.86
VCX3A-203ENST00000612369 STK26Q9P289 416 aa26.69■■□□□ 1.86
VCX3A-203ENST00000612369 LAMC1P11047 1609 aa26.68■■□□□ 1.86
VCX3A-203ENST00000612369 NHSL1Q5SYE7 1610 aa26.68■■□□□ 1.86
VCX3A-203ENST00000612369 KNDC1Q76NI1 1749 aa26.68■■□□□ 1.86
VCX3A-203ENST00000612369 YTHDC2Q9H6S0 1430 aaKnown RBP26.67■■□□□ 1.86
VCX3A-203ENST00000612369 SIRT1Q96EB6 747 aa26.67■■□□□ 1.86
VCX3A-203ENST00000612369 SHPRHQ149N8 1683 aa26.66■■□□□ 1.86
VCX3A-203ENST00000612369 RGS17Q9UGC6 210 aaPredicted RBP26.65■■□□□ 1.86
VCX3A-203ENST00000612369 CDC42BPGQ6DT37 1551 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms