RNA–Protein interactions for RNA: ENST00000611107.1

SNCA-212, Transcript of synuclein alpha, humanhuman

TSL 5 BASIC

Gene SNCA, Length 297 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-212ENST00000611107 FOXD1Q16676 465 aa13.1□□□□□ -0.31
SNCA-212ENST00000611107 CPS1P31327 1500 aa13.09□□□□□ -0.31
SNCA-212ENST00000611107 CHGAP10645 457 aaKnown RBP13.09□□□□□ -0.31
SNCA-212ENST00000611107 RBM33Q96EV2 1170 aaKnown RBP13.08□□□□□ -0.32
SNCA-212ENST00000611107 TRIM52Q96A61 297 aa13.07□□□□□ -0.32
SNCA-212ENST00000611107 EID1Q9Y6B2 187 aa13.07□□□□□ -0.32
SNCA-212ENST00000611107 NRXN3Q9Y4C0 1643 aa13.06□□□□□ -0.32
SNCA-212ENST00000611107 ADAMTS13Q76LX8 1427 aa13.06□□□□□ -0.32
SNCA-212ENST00000611107 UBAP1LF5GYI3 381 aa13.06□□□□□ -0.32
SNCA-212ENST00000611107 TRPM2O94759 1503 aa13.06□□□□□ -0.32
SNCA-212ENST00000611107 CHD2O14647 1828 aaKnown RBP13.06□□□□□ -0.32
SNCA-212ENST00000611107 PLEKHG1Q9ULL1 1385 aa13.05□□□□□ -0.32
SNCA-212ENST00000611107 NWD1Q149M9 1564 aa13.03□□□□□ -0.32
SNCA-212ENST00000611107 KIF1BO60333 1816 aa13.03□□□□□ -0.32
SNCA-212ENST00000611107 NEXMIFQ5QGS0 1516 aa13.03□□□□□ -0.32
SNCA-212ENST00000611107 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
SNCA-212ENST00000611107 PTPRUQ92729 1446 aa13.02□□□□□ -0.33
SNCA-212ENST00000611107 KCNA6P17658 529 aa13.01□□□□□ -0.33
SNCA-212ENST00000611107 PIP4K2BP78356 416 aa13.01□□□□□ -0.33
SNCA-212ENST00000611107 SETD5Q9C0A6 1442 aa13□□□□□ -0.33
SNCA-212ENST00000611107 TMEM94Q12767 1356 aa12.99□□□□□ -0.33
SNCA-212ENST00000611107 RAB3GAP2Q9H2M9 1393 aa12.99□□□□□ -0.33
SNCA-212ENST00000611107 PPP1R15AO75807 674 aaPredicted RBP12.99□□□□□ -0.33
SNCA-212ENST00000611107 BCANQ96GW7 911 aa12.99□□□□□ -0.33
SNCA-212ENST00000611107 MPHOSPH9Q99550 1183 aa12.99□□□□□ -0.33
SNCA-212ENST00000611107 HSPA1LP34931 641 aa12.98□□□□□ -0.33
SNCA-212ENST00000611107 PPLO60437 1756 aa12.98□□□□□ -0.33
SNCA-212ENST00000611107 SETD1AO15047 1707 aaKnown RBP12.98□□□□□ -0.33
SNCA-212ENST00000611107 TBX22Q9Y458 520 aa12.97□□□□□ -0.33
SNCA-212ENST00000611107 SETBP1Q9Y6X0 1596 aa12.97□□□□□ -0.33
SNCA-212ENST00000611107 METP08581 1390 aa12.96□□□□□ -0.33
SNCA-212ENST00000611107 SCAF1Q9H7N4 1312 aaKnown RBP12.96□□□□□ -0.33
SNCA-212ENST00000611107 ZNF326Q5BKZ1 582 aaKnown RBP12.96□□□□□ -0.33
SNCA-212ENST00000611107 PROSER2Q86WR7 435 aaPredicted RBP12.96□□□□□ -0.33
SNCA-212ENST00000611107 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.95□□□□□ -0.34
SNCA-212ENST00000611107 XRN1Q8IZH2 1706 aaKnown RBP12.95□□□□□ -0.34
SNCA-212ENST00000611107 DIP2AQ14689 1571 aa12.94□□□□□ -0.34
SNCA-212ENST00000611107 IFT172Q9UG01 1749 aa12.94□□□□□ -0.34
SNCA-212ENST00000611107 NKTRP30414 1462 aaKnown RBP12.94□□□□□ -0.34
SNCA-212ENST00000611107 TOM1O60784 492 aa12.94□□□□□ -0.34
SNCA-212ENST00000611107 SPATA31E1Q6ZUB1 1445 aa12.94□□□□□ -0.34
SNCA-212ENST00000611107 AMOTL2Q9Y2J4 779 aa12.92□□□□□ -0.34
SNCA-212ENST00000611107 ADGRF5Q8IZF2 1346 aa12.91□□□□□ -0.34
SNCA-212ENST00000611107 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
SNCA-212ENST00000611107 HDGFP51858 240 aaKnown RBP12.9□□□□□ -0.34
SNCA-212ENST00000611107 RGL3Q3MIN7 710 aa12.9□□□□□ -0.34
SNCA-212ENST00000611107 ROBO1Q9Y6N7 1651 aa12.89□□□□□ -0.35
SNCA-212ENST00000611107 ILDR2Q71H61 639 aa12.89□□□□□ -0.35
SNCA-212ENST00000611107 CCDC144AA2RUR9 1427 aa12.88□□□□□ -0.35
SNCA-212ENST00000611107 ASXL1Q8IXJ9 1541 aa12.88□□□□□ -0.35
SNCA-212ENST00000611107 PIK3R4Q99570 1358 aa12.88□□□□□ -0.35
SNCA-212ENST00000611107 ANKRD30BQ9BXX2 1392 aa12.87□□□□□ -0.35
SNCA-212ENST00000611107 NALCNQ8IZF0 1738 aa12.87□□□□□ -0.35
SNCA-212ENST00000611107 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
SNCA-212ENST00000611107 FAM135BQ49AJ0 1406 aa12.86□□□□□ -0.35
SNCA-212ENST00000611107 ROBO2Q9HCK4 1378 aa12.85□□□□□ -0.35
SNCA-212ENST00000611107 DISP3Q9P2K9 1392 aa12.85□□□□□ -0.35
SNCA-212ENST00000611107 MED1Q15648 1581 aaPredicted RBP12.85□□□□□ -0.35
SNCA-212ENST00000611107 RPGRIP1LQ68CZ1 1315 aa12.85□□□□□ -0.35
SNCA-212ENST00000611107 MSH6P52701 1360 aa12.84□□□□□ -0.35
SNCA-212ENST00000611107 VGFO15240 615 aaPredicted RBP12.83□□□□□ -0.36
SNCA-212ENST00000611107 SLAIN2Q9P270 581 aa12.83□□□□□ -0.36
SNCA-212ENST00000611107 TMEM132EQ6IEE7 984 aa12.82□□□□□ -0.36
SNCA-212ENST00000611107 PIK3C2GO75747 1445 aa12.81□□□□□ -0.36
SNCA-212ENST00000611107 NCOA3Q9Y6Q9 1424 aa12.81□□□□□ -0.36
SNCA-212ENST00000611107 PHLPP1O60346 1717 aa12.81□□□□□ -0.36
SNCA-212ENST00000611107 NRXN1Q9ULB1 1477 aa12.8□□□□□ -0.36
SNCA-212ENST00000611107 HRCP23327 699 aa12.8□□□□□ -0.36
SNCA-212ENST00000611107 C19orf44Q9H6X5 657 aa12.8□□□□□ -0.36
SNCA-212ENST00000611107 COL16A1Q07092 1604 aaPredicted RBP12.8□□□□□ -0.36
SNCA-212ENST00000611107 PLEKHH1Q9ULM0 1364 aa12.8□□□□□ -0.36
SNCA-212ENST00000611107 MST1RQ04912 1400 aa12.79□□□□□ -0.36
SNCA-212ENST00000611107 C14orf37Q86TY3 774 aa12.79□□□□□ -0.36
SNCA-212ENST00000611107 DDX17Q92841 729 aaKnown RBP12.79□□□□□ -0.36
SNCA-212ENST00000611107 DHX57Q6P158 1386 aaKnown RBP12.79□□□□□ -0.36
SNCA-212ENST00000611107 PRAG1Q86YV5 1406 aa12.79□□□□□ -0.36
SNCA-212ENST00000611107 ADGRL3Q9HAR2 1447 aa12.79□□□□□ -0.36
SNCA-212ENST00000611107 CFAP70Q5T0N1 1121 aa12.78□□□□□ -0.36
SNCA-212ENST00000611107 WAPLQ7Z5K2 1190 aa12.78□□□□□ -0.36
SNCA-212ENST00000611107 STK26Q9P289 416 aa12.78□□□□□ -0.36
SNCA-212ENST00000611107 ACIN1Q9UKV3 1341 aaKnown RBP12.78□□□□□ -0.36
SNCA-212ENST00000611107 PTCH1Q13635 1447 aa12.78□□□□□ -0.36
SNCA-212ENST00000611107 BRINP3Q76B58 766 aa12.77□□□□□ -0.37
SNCA-212ENST00000611107 MYOM2P54296 1465 aa12.77□□□□□ -0.37
SNCA-212ENST00000611107 KNDC1Q76NI1 1749 aa12.76□□□□□ -0.37
SNCA-212ENST00000611107 RGS17Q9UGC6 210 aaPredicted RBP12.76□□□□□ -0.37
SNCA-212ENST00000611107 ATF3P18847 181 aa12.75□□□□□ -0.37
SNCA-212ENST00000611107 LRPPRCP42704 1394 aaKnown RBP12.75□□□□□ -0.37
SNCA-212ENST00000611107 DCCP43146 1447 aa12.75□□□□□ -0.37
SNCA-212ENST00000611107 AHDC1Q5TGY3 1603 aaPredicted RBP12.75□□□□□ -0.37
SNCA-212ENST00000611107 CADPS2Q86UW7 1296 aa12.75□□□□□ -0.37
SNCA-212ENST00000611107 C14orf93Q9H972 538 aaKnown RBP12.75□□□□□ -0.37
SNCA-212ENST00000611107 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
SNCA-212ENST00000611107 NHSL1Q5SYE7 1610 aa12.74□□□□□ -0.37
SNCA-212ENST00000611107 TECPR2O15040 1411 aa12.74□□□□□ -0.37
SNCA-212ENST00000611107 YTHDC2Q9H6S0 1430 aaKnown RBP12.74□□□□□ -0.37
SNCA-212ENST00000611107 RGPD8O14715 1765 aaPredicted RBP12.74□□□□□ -0.37
SNCA-212ENST00000611107 ADGRB1O14514 1584 aa12.73□□□□□ -0.37
SNCA-212ENST00000611107 C1orf167Q5SNV9 1468 aa12.73□□□□□ -0.37
SNCA-212ENST00000611107 ORAI2Q96SN7 254 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms