RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 MPHOSPH9Q99550 1183 aa21.18■□□□□ 0.98
USE1-210ENST00000601662 MYO5BQ9ULV0 1848 aa21.18■□□□□ 0.98
USE1-210ENST00000601662 HDGFP51858 240 aaKnown RBP21.17■□□□□ 0.98
USE1-210ENST00000601662 ZNF326Q5BKZ1 582 aaKnown RBP21.17■□□□□ 0.98
USE1-210ENST00000601662 KDM5AP29375 1690 aaKnown RBP21.17■□□□□ 0.98
USE1-210ENST00000601662 SPHKAPQ2M3C7 1700 aa21.17■□□□□ 0.98
USE1-210ENST00000601662 TMEM131LA2VDJ0 1609 aa21.16■□□□□ 0.98
USE1-210ENST00000601662 RIMS2Q9UQ26 1411 aa21.16■□□□□ 0.98
USE1-210ENST00000601662 SLC26A8Q96RN1 970 aa21.16■□□□□ 0.98
USE1-210ENST00000601662 CCER1Q8TC90 406 aaPredicted RBP21.15■□□□□ 0.98
USE1-210ENST00000601662 DHX57Q6P158 1386 aaKnown RBP21.13■□□□□ 0.97
USE1-210ENST00000601662 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.13■□□□□ 0.97
USE1-210ENST00000601662 ZFYVE9O95405 1425 aa21.11■□□□□ 0.97
USE1-210ENST00000601662 CLSPNQ9HAW4 1339 aa21.1■□□□□ 0.97
USE1-210ENST00000601662 TRPM2O94759 1503 aa21.09■□□□□ 0.97
USE1-210ENST00000601662 CLTCL1P53675 1640 aa21.09■□□□□ 0.97
USE1-210ENST00000601662 PLEKHG1Q9ULL1 1385 aa21.07■□□□□ 0.96
USE1-210ENST00000601662 CPS1P31327 1500 aa21.05■□□□□ 0.96
USE1-210ENST00000601662 UBAP1LF5GYI3 381 aa21.05■□□□□ 0.96
USE1-210ENST00000601662 KIF1BO60333 1816 aa21.02■□□□□ 0.96
USE1-210ENST00000601662 KCNA6P17658 529 aa21.02■□□□□ 0.96
USE1-210ENST00000601662 RGL3Q3MIN7 710 aa21.02■□□□□ 0.96
USE1-210ENST00000601662 STRCP1A6NGW2 1772 aa21.02■□□□□ 0.96
USE1-210ENST00000601662 CCDC144AA2RUR9 1427 aa21.02■□□□□ 0.96
USE1-210ENST00000601662 IQSEC2Q5JU85 1478 aa21.01■□□□□ 0.95
USE1-210ENST00000601662 TBX22Q9Y458 520 aa21■□□□□ 0.95
USE1-210ENST00000601662 PROSER2Q86WR7 435 aaPredicted RBP20.99■□□□□ 0.95
USE1-210ENST00000601662 RBM33Q96EV2 1170 aaKnown RBP20.99■□□□□ 0.95
USE1-210ENST00000601662 SCAF1Q9H7N4 1312 aaKnown RBP20.98■□□□□ 0.95
USE1-210ENST00000601662 LRRC7Q96NW7 1537 aa20.98■□□□□ 0.95
USE1-210ENST00000601662 ANKRD30BQ9BXX2 1392 aa20.97■□□□□ 0.95
USE1-210ENST00000601662 ADAMTS13Q76LX8 1427 aa20.96■□□□□ 0.95
USE1-210ENST00000601662 VGFO15240 615 aaPredicted RBP20.96■□□□□ 0.95
USE1-210ENST00000601662 PIP4K2BP78356 416 aa20.96■□□□□ 0.95
USE1-210ENST00000601662 RPGRIP1LQ68CZ1 1315 aa20.95■□□□□ 0.94
USE1-210ENST00000601662 NEXMIFQ5QGS0 1516 aa20.94■□□□□ 0.94
USE1-210ENST00000601662 TOM1O60784 492 aa20.94■□□□□ 0.94
USE1-210ENST00000601662 TMEM94Q12767 1356 aa20.92■□□□□ 0.94
USE1-210ENST00000601662 AMOTL2Q9Y2J4 779 aa20.91■□□□□ 0.94
USE1-210ENST00000601662 SPATA31E1Q6ZUB1 1445 aa20.89■□□□□ 0.94
USE1-210ENST00000601662 ZEB1P37275 1124 aaPredicted RBP20.88■□□□□ 0.93
USE1-210ENST00000601662 C14orf37Q86TY3 774 aa20.88■□□□□ 0.93
USE1-210ENST00000601662 CHD2O14647 1828 aaKnown RBP20.88■□□□□ 0.93
USE1-210ENST00000601662 METP08581 1390 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 ADGRF5Q8IZF2 1346 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 NEUROD1Q13562 356 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 SIN3AQ96ST3 1273 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 TIMELESSQ9UNS1 1208 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 DIP2AQ14689 1571 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 SETBP1Q9Y6X0 1596 aa20.87■□□□□ 0.93
USE1-210ENST00000601662 PIK3R4Q99570 1358 aa20.86■□□□□ 0.93
USE1-210ENST00000601662 PTPRUQ92729 1446 aa20.86■□□□□ 0.93
USE1-210ENST00000601662 NRXN3Q9Y4C0 1643 aa20.86■□□□□ 0.93
USE1-210ENST00000601662 NWD1Q149M9 1564 aa20.85■□□□□ 0.93
USE1-210ENST00000601662 NKTRP30414 1462 aaKnown RBP20.85■□□□□ 0.93
USE1-210ENST00000601662 PPLO60437 1756 aa20.84■□□□□ 0.93
USE1-210ENST00000601662 XIRP1Q702N8 1843 aaKnown RBP20.83■□□□□ 0.92
USE1-210ENST00000601662 KDM2AQ9Y2K7 1162 aa20.8■□□□□ 0.92
USE1-210ENST00000601662 MSH6P52701 1360 aa20.8■□□□□ 0.92
USE1-210ENST00000601662 ALKQ9UM73 1620 aa20.78■□□□□ 0.92
USE1-210ENST00000601662 HSPA1LP34931 641 aa20.78■□□□□ 0.92
USE1-210ENST00000601662 TONSLQ96HA7 1378 aa20.77■□□□□ 0.92
USE1-210ENST00000601662 STK26Q9P289 416 aa20.77■□□□□ 0.92
USE1-210ENST00000601662 TMEM132EQ6IEE7 984 aa20.76■□□□□ 0.91
USE1-210ENST00000601662 DCAF11Q8TEB1 546 aa20.76■□□□□ 0.91
USE1-210ENST00000601662 C19orf44Q9H6X5 657 aa20.75■□□□□ 0.91
USE1-210ENST00000601662 ATF3P18847 181 aa20.74■□□□□ 0.91
USE1-210ENST00000601662 IFT172Q9UG01 1749 aa20.74■□□□□ 0.91
USE1-210ENST00000601662 CFAP70Q5T0N1 1121 aa20.73■□□□□ 0.91
USE1-210ENST00000601662 SLAIN2Q9P270 581 aa20.73■□□□□ 0.91
USE1-210ENST00000601662 XRN1Q8IZH2 1706 aaKnown RBP20.73■□□□□ 0.91
USE1-210ENST00000601662 STAC3Q96MF2 364 aa20.72■□□□□ 0.91
USE1-210ENST00000601662 PIK3C2GO75747 1445 aa20.71■□□□□ 0.91
USE1-210ENST00000601662 NCOA3Q9Y6Q9 1424 aa20.71■□□□□ 0.91
USE1-210ENST00000601662 SETD1AO15047 1707 aaKnown RBP20.7■□□□□ 0.9
USE1-210ENST00000601662 CADPS2Q86UW7 1296 aa20.7■□□□□ 0.9
USE1-210ENST00000601662 L3MBTL2Q969R5 705 aa20.7■□□□□ 0.9
USE1-210ENST00000601662 C14orf93Q9H972 538 aaKnown RBP20.7■□□□□ 0.9
USE1-210ENST00000601662 ROBO2Q9HCK4 1378 aa20.7■□□□□ 0.9
USE1-210ENST00000601662 MYOM2P54296 1465 aa20.68■□□□□ 0.9
USE1-210ENST00000601662 WAPLQ7Z5K2 1190 aa20.66■□□□□ 0.9
USE1-210ENST00000601662 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.66■□□□□ 0.9
USE1-210ENST00000601662 FAM135BQ49AJ0 1406 aa20.65■□□□□ 0.9
USE1-210ENST00000601662 NRXN1Q9ULB1 1477 aa20.64■□□□□ 0.89
USE1-210ENST00000601662 LRPPRCP42704 1394 aaKnown RBP20.64■□□□□ 0.89
USE1-210ENST00000601662 PTCH1Q13635 1447 aa20.63■□□□□ 0.89
USE1-210ENST00000601662 YTHDC2Q9H6S0 1430 aaKnown RBP20.62■□□□□ 0.89
USE1-210ENST00000601662 ADGRL3Q9HAR2 1447 aa20.62■□□□□ 0.89
USE1-210ENST00000601662 ASXL1Q8IXJ9 1541 aa20.62■□□□□ 0.89
USE1-210ENST00000601662 ABCC11Q96J66 1382 aa20.61■□□□□ 0.89
USE1-210ENST00000601662 ROBO1Q9Y6N7 1651 aa20.61■□□□□ 0.89
USE1-210ENST00000601662 PLEKHH1Q9ULM0 1364 aa20.59■□□□□ 0.89
USE1-210ENST00000601662 SAFB2Q14151 953 aaKnown RBP eCLIP20.59■□□□□ 0.89
USE1-210ENST00000601662 TRAK1Q9UPV9 953 aa20.58■□□□□ 0.89
USE1-210ENST00000601662 DCCP43146 1447 aa20.58■□□□□ 0.88
USE1-210ENST00000601662 NALCNQ8IZF0 1738 aa20.57■□□□□ 0.88
USE1-210ENST00000601662 POGKQ9P215 609 aa20.57■□□□□ 0.88
USE1-210ENST00000601662 TECPR2O15040 1411 aa20.56■□□□□ 0.88
USE1-210ENST00000601662 PRAG1Q86YV5 1406 aa20.56■□□□□ 0.88
USE1-210ENST00000601662 BRINP3Q76B58 766 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms