RNA–Protein interactions for RNA: ENST00000601357.6

SSBP4-209, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 606 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-209ENST00000601357 PLEKHG1Q9ULL1 1385 aa34.36■■■■□ 3.09
SSBP4-209ENST00000601357 SLC26A8Q96RN1 970 aa34.35■■■■□ 3.09
SSBP4-209ENST00000601357 PIP4K2BP78356 416 aa34.34■■■■□ 3.09
SSBP4-209ENST00000601357 NWD1Q149M9 1564 aa34.33■■■■□ 3.09
SSBP4-209ENST00000601357 KCNA6P17658 529 aa34.31■■■■□ 3.08
SSBP4-209ENST00000601357 HDGFP51858 240 aaKnown RBP34.3■■■■□ 3.08
SSBP4-209ENST00000601357 SCAF1Q9H7N4 1312 aaKnown RBP34.3■■■■□ 3.08
SSBP4-209ENST00000601357 CHGAP10645 457 aaKnown RBP34.28■■■■□ 3.08
SSBP4-209ENST00000601357 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.27■■■■□ 3.08
SSBP4-209ENST00000601357 HSPA1LP34931 641 aa34.26■■■■□ 3.08
SSBP4-209ENST00000601357 NKTRP30414 1462 aaKnown RBP34.26■■■■□ 3.07
SSBP4-209ENST00000601357 PPP1R15AO75807 674 aaPredicted RBP34.25■■■■□ 3.07
SSBP4-209ENST00000601357 CHD2O14647 1828 aaKnown RBP34.24■■■■□ 3.07
SSBP4-209ENST00000601357 DISP3Q9P2K9 1392 aa34.23■■■■□ 3.07
SSBP4-209ENST00000601357 TMEM94Q12767 1356 aa34.23■■■■□ 3.07
SSBP4-209ENST00000601357 TRPM2O94759 1503 aa34.22■■■■□ 3.07
SSBP4-209ENST00000601357 BCANQ96GW7 911 aa34.22■■■■□ 3.07
SSBP4-209ENST00000601357 DIP2AQ14689 1571 aa34.2■■■■□ 3.07
SSBP4-209ENST00000601357 CLTCL1P53675 1640 aa34.2■■■■□ 3.07
SSBP4-209ENST00000601357 ADAMTS13Q76LX8 1427 aa34.2■■■■□ 3.06
SSBP4-209ENST00000601357 SENP3Q9H4L4 574 aaPredicted RBP34.19■■■■□ 3.06
SSBP4-209ENST00000601357 TBX22Q9Y458 520 aa34.19■■■■□ 3.06
SSBP4-209ENST00000601357 NUTM2DQ5VT03 806 aaPredicted RBP34.17■■■■□ 3.06
SSBP4-209ENST00000601357 PROSER2Q86WR7 435 aaPredicted RBP34.15■■■■□ 3.06
SSBP4-209ENST00000601357 TRIM52Q96A61 297 aa34.11■■■■□ 3.05
SSBP4-209ENST00000601357 NRXN3Q9Y4C0 1643 aa34.11■■■■□ 3.05
SSBP4-209ENST00000601357 RBM33Q96EV2 1170 aaKnown RBP34.1■■■■□ 3.05
SSBP4-209ENST00000601357 PIK3R4Q99570 1358 aa34.1■■■■□ 3.05
SSBP4-209ENST00000601357 SETBP1Q9Y6X0 1596 aa34.09■■■■□ 3.05
SSBP4-209ENST00000601357 KIF1BO60333 1816 aa34.09■■■■□ 3.05
SSBP4-209ENST00000601357 NEXMIFQ5QGS0 1516 aa34.07■■■■□ 3.04
SSBP4-209ENST00000601357 FAM135BQ49AJ0 1406 aa34.04■■■■□ 3.04
SSBP4-209ENST00000601357 SLC4A1APQ9BWU0 796 aaKnown RBP34.04■■■■□ 3.04
SSBP4-209ENST00000601357 MED1Q15648 1581 aaPredicted RBP34.02■■■■□ 3.04
SSBP4-209ENST00000601357 ZNF326Q5BKZ1 582 aaKnown RBP34.02■■■■□ 3.04
SSBP4-209ENST00000601357 ILDR2Q71H61 639 aa34.02■■■■□ 3.04
SSBP4-209ENST00000601357 NCOA3Q9Y6Q9 1424 aa34.02■■■■□ 3.04
SSBP4-209ENST00000601357 MSH6P52701 1360 aa34■■■■□ 3.03
SSBP4-209ENST00000601357 PTPRUQ92729 1446 aa34■■■■□ 3.03
SSBP4-209ENST00000601357 ROBO1Q9Y6N7 1651 aa33.99■■■■□ 3.03
SSBP4-209ENST00000601357 XRN1Q8IZH2 1706 aaKnown RBP33.97■■■■□ 3.03
SSBP4-209ENST00000601357 AMOTL2Q9Y2J4 779 aa33.93■■■■□ 3.02
SSBP4-209ENST00000601357 METP08581 1390 aa33.9■■■■□ 3.02
SSBP4-209ENST00000601357 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.9■■■■□ 3.02
SSBP4-209ENST00000601357 SLAIN2Q9P270 581 aa33.89■■■■□ 3.02
SSBP4-209ENST00000601357 FOXD1Q16676 465 aa33.88■■■■□ 3.01
SSBP4-209ENST00000601357 MPHOSPH9Q99550 1183 aa33.87■■■■□ 3.01
SSBP4-209ENST00000601357 PPLO60437 1756 aa33.87■■■■□ 3.01
SSBP4-209ENST00000601357 RPGRIP1LQ68CZ1 1315 aa33.85■■■■□ 3.01
SSBP4-209ENST00000601357 SETD1AO15047 1707 aaKnown RBP33.85■■■■□ 3.01
SSBP4-209ENST00000601357 C19orf44Q9H6X5 657 aa33.84■■■■□ 3.01
SSBP4-209ENST00000601357 SETD5Q9C0A6 1442 aa33.84■■■■□ 3.01
SSBP4-209ENST00000601357 VGFO15240 615 aaPredicted RBP33.83■■■■□ 3.01
SSBP4-209ENST00000601357 ACIN1Q9UKV3 1341 aaKnown RBP33.81■■■■□ 3
SSBP4-209ENST00000601357 C14orf37Q86TY3 774 aa33.81■■■■□ 3
SSBP4-209ENST00000601357 CCDC144AA2RUR9 1427 aa33.8■■■■□ 3
SSBP4-209ENST00000601357 CADPS2Q86UW7 1296 aa33.78■■■■□ 3
SSBP4-209ENST00000601357 DCCP43146 1447 aa33.78■■■■□ 3
SSBP4-209ENST00000601357 PHLPP1O60346 1717 aa33.77■■■■□ 3
SSBP4-209ENST00000601357 SPATA31E1Q6ZUB1 1445 aa33.77■■■■□ 3
SSBP4-209ENST00000601357 IFT172Q9UG01 1749 aa33.74■■■□□ 2.99
SSBP4-209ENST00000601357 ATF3P18847 181 aa33.74■■■□□ 2.99
SSBP4-209ENST00000601357 SOCS7O14512 581 aa33.73■■■□□ 2.99
SSBP4-209ENST00000601357 RAB3GAP2Q9H2M9 1393 aa33.72■■■□□ 2.99
SSBP4-209ENST00000601357 PRAG1Q86YV5 1406 aa33.71■■■□□ 2.99
SSBP4-209ENST00000601357 COL16A1Q07092 1604 aaPredicted RBP33.71■■■□□ 2.99
SSBP4-209ENST00000601357 NALCNQ8IZF0 1738 aa33.7■■■□□ 2.98
SSBP4-209ENST00000601357 PTCH1Q13635 1447 aa33.69■■■□□ 2.98
SSBP4-209ENST00000601357 ADGRL3Q9HAR2 1447 aa33.68■■■□□ 2.98
SSBP4-209ENST00000601357 AHDC1Q5TGY3 1603 aaPredicted RBP33.68■■■□□ 2.98
SSBP4-209ENST00000601357 PHF23Q9BUL5 403 aaPredicted RBP33.66■■■□□ 2.98
SSBP4-209ENST00000601357 MST1RQ04912 1400 aa33.64■■■□□ 2.98
SSBP4-209ENST00000601357 ANKRD30BQ9BXX2 1392 aa33.63■■■□□ 2.97
SSBP4-209ENST00000601357 ADGRF5Q8IZF2 1346 aa33.63■■■□□ 2.97
SSBP4-209ENST00000601357 ROBO2Q9HCK4 1378 aa33.62■■■□□ 2.97
SSBP4-209ENST00000601357 RGL3Q3MIN7 710 aa33.62■■■□□ 2.97
SSBP4-209ENST00000601357 JCADQ9P266 1359 aa33.6■■■□□ 2.97
SSBP4-209ENST00000601357 BRINP3Q76B58 766 aa33.6■■■□□ 2.97
SSBP4-209ENST00000601357 ASXL1Q8IXJ9 1541 aa33.58■■■□□ 2.97
SSBP4-209ENST00000601357 PIK3C2GO75747 1445 aa33.56■■■□□ 2.96
SSBP4-209ENST00000601357 RGS17Q9UGC6 210 aaPredicted RBP33.55■■■□□ 2.96
SSBP4-209ENST00000601357 NHSL1Q5SYE7 1610 aa33.54■■■□□ 2.96
SSBP4-209ENST00000601357 SHPRHQ149N8 1683 aa33.52■■■□□ 2.96
SSBP4-209ENST00000601357 HRCP23327 699 aa33.51■■■□□ 2.95
SSBP4-209ENST00000601357 NRXN1Q9ULB1 1477 aa33.5■■■□□ 2.95
SSBP4-209ENST00000601357 TECPR2O15040 1411 aa33.49■■■□□ 2.95
SSBP4-209ENST00000601357 MYOM2P54296 1465 aa33.48■■■□□ 2.95
SSBP4-209ENST00000601357 KNDC1Q76NI1 1749 aa33.48■■■□□ 2.95
SSBP4-209ENST00000601357 C1orf167Q5SNV9 1468 aa33.47■■■□□ 2.95
SSBP4-209ENST00000601357 LRPPRCP42704 1394 aaKnown RBP33.46■■■□□ 2.95
SSBP4-209ENST00000601357 SPATA31A6Q5VVP1 1343 aa33.45■■■□□ 2.95
SSBP4-209ENST00000601357 LAMC1P11047 1609 aa33.44■■■□□ 2.94
SSBP4-209ENST00000601357 LRP6O75581 1613 aa33.43■■■□□ 2.94
SSBP4-209ENST00000601357 CDC42BPGQ6DT37 1551 aa33.43■■■□□ 2.94
SSBP4-209ENST00000601357 ABCC11Q96J66 1382 aa33.42■■■□□ 2.94
SSBP4-209ENST00000601357 TMEM132EQ6IEE7 984 aa33.39■■■□□ 2.94
SSBP4-209ENST00000601357 YTHDC2Q9H6S0 1430 aaKnown RBP33.38■■■□□ 2.93
SSBP4-209ENST00000601357 C14orf93Q9H972 538 aaKnown RBP33.38■■■□□ 2.93
SSBP4-209ENST00000601357 STK26Q9P289 416 aa33.37■■■□□ 2.93
SSBP4-209ENST00000601357 POTEAQ6S8J7 498 aa33.34■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms