RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 APLP2Q06481 763 aa9.57□□□□□ -0.88
VRK3-220ENST00000600259 NKTRP30414 1462 aaKnown RBP9.56□□□□□ -0.88
VRK3-220ENST00000600259 PLEKHG1Q9ULL1 1385 aa9.56□□□□□ -0.88
VRK3-220ENST00000600259 ADGRB3O60242 1522 aa9.56□□□□□ -0.88
VRK3-220ENST00000600259 NWD1Q149M9 1564 aa9.55□□□□□ -0.88
VRK3-220ENST00000600259 ANKRD50Q9ULJ7 1429 aa9.55□□□□□ -0.88
VRK3-220ENST00000600259 ROBO1Q9Y6N7 1651 aa9.55□□□□□ -0.88
VRK3-220ENST00000600259 RPRD2Q5VT52 1461 aaKnown RBP9.54□□□□□ -0.88
VRK3-220ENST00000600259 MSH6P52701 1360 aa9.54□□□□□ -0.88
VRK3-220ENST00000600259 ADAMTS13Q76LX8 1427 aa9.54□□□□□ -0.88
VRK3-220ENST00000600259 RIMS2Q9UQ26 1411 aa9.54□□□□□ -0.88
VRK3-220ENST00000600259 NCOA3Q9Y6Q9 1424 aa9.54□□□□□ -0.88
VRK3-220ENST00000600259 JCADQ9P266 1359 aa9.53□□□□□ -0.88
VRK3-220ENST00000600259 HDGFP51858 240 aaKnown RBP9.53□□□□□ -0.88
VRK3-220ENST00000600259 BCANQ96GW7 911 aa9.53□□□□□ -0.88
VRK3-220ENST00000600259 FAM50AQ14320 339 aaKnown RBP9.52□□□□□ -0.89
VRK3-220ENST00000600259 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.52□□□□□ -0.89
VRK3-220ENST00000600259 C19orf44Q9H6X5 657 aa9.52□□□□□ -0.89
VRK3-220ENST00000600259 NUTM2DQ5VT03 806 aaPredicted RBP9.51□□□□□ -0.89
VRK3-220ENST00000600259 TMEM131LA2VDJ0 1609 aa9.51□□□□□ -0.89
VRK3-220ENST00000600259 CHD2O14647 1828 aaKnown RBP9.5□□□□□ -0.89
VRK3-220ENST00000600259 PIK3R4Q99570 1358 aa9.5□□□□□ -0.89
VRK3-220ENST00000600259 PTPRUQ92729 1446 aa9.49□□□□□ -0.89
VRK3-220ENST00000600259 PPP1R15AO75807 674 aaPredicted RBP9.49□□□□□ -0.89
VRK3-220ENST00000600259 CHGAP10645 457 aaKnown RBP9.49□□□□□ -0.89
VRK3-220ENST00000600259 CADPS2Q86UW7 1296 aa9.49□□□□□ -0.89
VRK3-220ENST00000600259 AMOTL2Q9Y2J4 779 aa9.49□□□□□ -0.89
VRK3-220ENST00000600259 SPATA31A6Q5VVP1 1343 aa9.49□□□□□ -0.89
VRK3-220ENST00000600259 LRP6O75581 1613 aa9.49□□□□□ -0.89
VRK3-220ENST00000600259 COL16A1Q07092 1604 aaPredicted RBP9.49□□□□□ -0.89
VRK3-220ENST00000600259 BRINP3Q76B58 766 aa9.48□□□□□ -0.89
VRK3-220ENST00000600259 ROCK1Q13464 1354 aa9.48□□□□□ -0.89
VRK3-220ENST00000600259 UPF1Q92900 1129 aaKnown RBP eCLIP9.47□□□□□ -0.89
VRK3-220ENST00000600259 PHLPP1O60346 1717 aa9.46□□□□□ -0.89
VRK3-220ENST00000600259 ATF3P18847 181 aa9.46□□□□□ -0.9
VRK3-220ENST00000600259 MYO5BQ9ULV0 1848 aa9.46□□□□□ -0.9
VRK3-220ENST00000600259 UNC13BO14795 1591 aa9.46□□□□□ -0.9
VRK3-220ENST00000600259 AHDC1Q5TGY3 1603 aaPredicted RBP9.45□□□□□ -0.9
VRK3-220ENST00000600259 ZNF772Q68DY9 489 aaPredicted RBP9.45□□□□□ -0.9
VRK3-220ENST00000600259 C14orf37Q86TY3 774 aa9.45□□□□□ -0.9
VRK3-220ENST00000600259 NUP155O75694 1391 aa9.45□□□□□ -0.9
VRK3-220ENST00000600259 GCC2Q8IWJ2 1684 aa9.45□□□□□ -0.9
VRK3-220ENST00000600259 E9PCH4 1651 aa9.44□□□□□ -0.9
VRK3-220ENST00000600259 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.44□□□□□ -0.9
VRK3-220ENST00000600259 DIP2AQ14689 1571 aa9.43□□□□□ -0.9
VRK3-220ENST00000600259 SETD5Q9C0A6 1442 aa9.43□□□□□ -0.9
VRK3-220ENST00000600259 METP08581 1390 aa9.43□□□□□ -0.9
VRK3-220ENST00000600259 ADRA2BP18089 450 aa9.43□□□□□ -0.9
VRK3-220ENST00000600259 DCCP43146 1447 aa9.42□□□□□ -0.9
VRK3-220ENST00000600259 MST1RQ04912 1400 aa9.42□□□□□ -0.9
VRK3-220ENST00000600259 RXRBP28702 533 aa9.42□□□□□ -0.9
VRK3-220ENST00000600259 TRIM52Q96A61 297 aa9.42□□□□□ -0.9
VRK3-220ENST00000600259 IQGAP3Q86VI3 1631 aa9.42□□□□□ -0.9
VRK3-220ENST00000600259 NUTM2BA6NNL0 878 aaPredicted RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 NUTM2EB1AL46 878 aaPredicted RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 MEX3CQ5U5Q3 659 aaKnown RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 NUTM2AQ8IVF1 878 aaPredicted RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 DDX17Q92841 729 aaKnown RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 LRRC59Q96AG4 307 aaKnown RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 SETD1AO15047 1707 aaKnown RBP9.41□□□□□ -0.9
VRK3-220ENST00000600259 TRPM2O94759 1503 aa9.41□□□□□ -0.9
VRK3-220ENST00000600259 AFF2P51816 1311 aa9.4□□□□□ -0.9
VRK3-220ENST00000600259 SHPRHQ149N8 1683 aa9.4□□□□□ -0.9
VRK3-220ENST00000600259 NRXN3Q9Y4C0 1643 aa9.4□□□□□ -0.9
VRK3-220ENST00000600259 SETBP1Q9Y6X0 1596 aa9.4□□□□□ -0.9
VRK3-220ENST00000600259 CDK12Q9NYV4 1490 aaPredicted RBP9.4□□□□□ -0.91
VRK3-220ENST00000600259 ITGAEP38570 1179 aa9.39□□□□□ -0.91
VRK3-220ENST00000600259 ASXL1Q8IXJ9 1541 aa9.39□□□□□ -0.91
VRK3-220ENST00000600259 XRN1Q8IZH2 1706 aaKnown RBP9.39□□□□□ -0.91
VRK3-220ENST00000600259 QTRT2Q9H974 415 aaKnown RBP9.38□□□□□ -0.91
VRK3-220ENST00000600259 PNPLA6Q8IY17 1366 aa9.37□□□□□ -0.91
VRK3-220ENST00000600259 ZNF326Q5BKZ1 582 aaKnown RBP9.37□□□□□ -0.91
VRK3-220ENST00000600259 ADGRL3Q9HAR2 1447 aa9.37□□□□□ -0.91
VRK3-220ENST00000600259 SOS2Q07890 1332 aaPredicted RBP9.36□□□□□ -0.91
VRK3-220ENST00000600259 C1orf167Q5SNV9 1468 aa9.36□□□□□ -0.91
VRK3-220ENST00000600259 RBM6P78332 1123 aaKnown RBP9.36□□□□□ -0.91
VRK3-220ENST00000600259 PPARGC1BQ86YN6 1023 aaKnown RBP9.36□□□□□ -0.91
VRK3-220ENST00000600259 ORAI2Q96SN7 254 aa9.36□□□□□ -0.91
VRK3-220ENST00000600259 C8orf37Q96NL8 207 aa9.35□□□□□ -0.91
VRK3-220ENST00000600259 NEXMIFQ5QGS0 1516 aa9.35□□□□□ -0.91
VRK3-220ENST00000600259 ROBO2Q9HCK4 1378 aa9.35□□□□□ -0.91
VRK3-220ENST00000600259 NHSL1Q5SYE7 1610 aa9.34□□□□□ -0.91
VRK3-220ENST00000600259 RGS12O14924 1447 aa9.34□□□□□ -0.91
VRK3-220ENST00000600259 FNBP4Q8N3X1 1017 aaPredicted RBP9.34□□□□□ -0.91
VRK3-220ENST00000600259 PRAG1Q86YV5 1406 aa9.33□□□□□ -0.92
VRK3-220ENST00000600259 VGFO15240 615 aaPredicted RBP9.33□□□□□ -0.92
VRK3-220ENST00000600259 NGLY1Q96IV0 654 aa9.33□□□□□ -0.92
VRK3-220ENST00000600259 NAIPQ13075 1403 aa9.32□□□□□ -0.92
VRK3-220ENST00000600259 SRCAPQ6ZRS2 3230 aa9.32□□□□□ -0.92
VRK3-220ENST00000600259 CLTCL1P53675 1640 aa9.32□□□□□ -0.92
VRK3-220ENST00000600259 ADAMTS2O95450 1211 aa9.32□□□□□ -0.92
VRK3-220ENST00000600259 RPGRIP1LQ68CZ1 1315 aa9.31□□□□□ -0.92
VRK3-220ENST00000600259 PTCH1Q13635 1447 aa9.31□□□□□ -0.92
VRK3-220ENST00000600259 LAMC1P11047 1609 aa9.31□□□□□ -0.92
VRK3-220ENST00000600259 SPHKAPQ2M3C7 1700 aa9.31□□□□□ -0.92
VRK3-220ENST00000600259 USP21Q9UK80 565 aa9.3□□□□□ -0.92
VRK3-220ENST00000600259 NALCNQ8IZF0 1738 aa9.3□□□□□ -0.92
VRK3-220ENST00000600259 RRBP1Q9P2E9 1410 aaKnown RBP9.3□□□□□ -0.92
VRK3-220ENST00000600259 TRPC5Q9UL62 973 aaPredicted RBP9.29□□□□□ -0.92
VRK3-220ENST00000600259 ATRNO75882 1429 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms