RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 EID1Q9Y6B2 187 aa16.06■□□□□ 0.16
LIG1-213ENST00000596672 RBM33Q96EV2 1170 aaKnown RBP16.05■□□□□ 0.16
LIG1-213ENST00000596672 NUTM2DQ5VT03 806 aaPredicted RBP16.04■□□□□ 0.16
LIG1-213ENST00000596672 RIMS2Q9UQ26 1411 aa16.03■□□□□ 0.16
LIG1-213ENST00000596672 DISP3Q9P2K9 1392 aa16.01■□□□□ 0.15
LIG1-213ENST00000596672 TOM1O60784 492 aa16.01■□□□□ 0.15
LIG1-213ENST00000596672 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
LIG1-213ENST00000596672 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
LIG1-213ENST00000596672 KCNA6P17658 529 aa16■□□□□ 0.15
LIG1-213ENST00000596672 CHD2O14647 1828 aaKnown RBP16■□□□□ 0.15
LIG1-213ENST00000596672 NWD1Q149M9 1564 aa16■□□□□ 0.15
LIG1-213ENST00000596672 PLEKHG1Q9ULL1 1385 aa16■□□□□ 0.15
LIG1-213ENST00000596672 SPHKAPQ2M3C7 1700 aa15.99■□□□□ 0.15
LIG1-213ENST00000596672 TMEM94Q12767 1356 aa15.99■□□□□ 0.15
LIG1-213ENST00000596672 CHGAP10645 457 aaKnown RBP15.98■□□□□ 0.15
LIG1-213ENST00000596672 CLTCL1P53675 1640 aa15.97■□□□□ 0.15
LIG1-213ENST00000596672 HFM1A2PYH4 1435 aa15.96■□□□□ 0.15
LIG1-213ENST00000596672 NRXN3Q9Y4C0 1643 aa15.95■□□□□ 0.14
LIG1-213ENST00000596672 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
LIG1-213ENST00000596672 PROSER2Q86WR7 435 aaPredicted RBP15.94■□□□□ 0.14
LIG1-213ENST00000596672 TBX22Q9Y458 520 aa15.93■□□□□ 0.14
LIG1-213ENST00000596672 NKTRP30414 1462 aaKnown RBP15.91■□□□□ 0.14
LIG1-213ENST00000596672 BCANQ96GW7 911 aa15.91■□□□□ 0.14
LIG1-213ENST00000596672 MED1Q15648 1581 aaPredicted RBP15.91■□□□□ 0.14
LIG1-213ENST00000596672 TRPM2O94759 1503 aa15.9■□□□□ 0.14
LIG1-213ENST00000596672 PPP1R15AO75807 674 aaPredicted RBP15.9■□□□□ 0.14
LIG1-213ENST00000596672 FOXD1Q16676 465 aa15.89■□□□□ 0.13
LIG1-213ENST00000596672 NEXMIFQ5QGS0 1516 aa15.89■□□□□ 0.13
LIG1-213ENST00000596672 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.88■□□□□ 0.13
LIG1-213ENST00000596672 FAM135BQ49AJ0 1406 aa15.87■□□□□ 0.13
LIG1-213ENST00000596672 TRIM52Q96A61 297 aa15.87■□□□□ 0.13
LIG1-213ENST00000596672 SETBP1Q9Y6X0 1596 aa15.87■□□□□ 0.13
LIG1-213ENST00000596672 METP08581 1390 aa15.87■□□□□ 0.13
LIG1-213ENST00000596672 ROBO1Q9Y6N7 1651 aa15.86■□□□□ 0.13
LIG1-213ENST00000596672 DIP2AQ14689 1571 aa15.85■□□□□ 0.13
LIG1-213ENST00000596672 HDGFP51858 240 aaKnown RBP15.85■□□□□ 0.13
LIG1-213ENST00000596672 XRN1Q8IZH2 1706 aaKnown RBP15.85■□□□□ 0.13
LIG1-213ENST00000596672 KIF1BO60333 1816 aa15.84■□□□□ 0.13
LIG1-213ENST00000596672 AMOTL2Q9Y2J4 779 aa15.84■□□□□ 0.13
LIG1-213ENST00000596672 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.83■□□□□ 0.13
LIG1-213ENST00000596672 SLC4A1APQ9BWU0 796 aaKnown RBP15.83■□□□□ 0.12
LIG1-213ENST00000596672 PIK3R4Q99570 1358 aa15.83■□□□□ 0.12
LIG1-213ENST00000596672 SETD1AO15047 1707 aaKnown RBP15.82■□□□□ 0.12
LIG1-213ENST00000596672 ZNF326Q5BKZ1 582 aaKnown RBP15.82■□□□□ 0.12
LIG1-213ENST00000596672 SLAIN2Q9P270 581 aa15.82■□□□□ 0.12
LIG1-213ENST00000596672 RGS17Q9UGC6 210 aaPredicted RBP15.81■□□□□ 0.12
LIG1-213ENST00000596672 MSH6P52701 1360 aa15.8■□□□□ 0.12
LIG1-213ENST00000596672 SOCS7O14512 581 aa15.79■□□□□ 0.12
LIG1-213ENST00000596672 PPLO60437 1756 aa15.79■□□□□ 0.12
LIG1-213ENST00000596672 NCOA3Q9Y6Q9 1424 aa15.78■□□□□ 0.12
LIG1-213ENST00000596672 MPHOSPH9Q99550 1183 aa15.78■□□□□ 0.12
LIG1-213ENST00000596672 SPATA31E1Q6ZUB1 1445 aa15.77■□□□□ 0.11
LIG1-213ENST00000596672 COL16A1Q07092 1604 aaPredicted RBP15.76■□□□□ 0.11
LIG1-213ENST00000596672 C19orf44Q9H6X5 657 aa15.75■□□□□ 0.11
LIG1-213ENST00000596672 PHLPP1O60346 1717 aa15.74■□□□□ 0.11
LIG1-213ENST00000596672 ADGRF5Q8IZF2 1346 aa15.74■□□□□ 0.11
LIG1-213ENST00000596672 SETD5Q9C0A6 1442 aa15.73■□□□□ 0.11
LIG1-213ENST00000596672 NALCNQ8IZF0 1738 aa15.73■□□□□ 0.11
LIG1-213ENST00000596672 ROBO2Q9HCK4 1378 aa15.73■□□□□ 0.11
LIG1-213ENST00000596672 IFT172Q9UG01 1749 aa15.72■□□□□ 0.11
LIG1-213ENST00000596672 MST1RQ04912 1400 aa15.71■□□□□ 0.11
LIG1-213ENST00000596672 BRINP3Q76B58 766 aa15.71■□□□□ 0.11
LIG1-213ENST00000596672 C14orf37Q86TY3 774 aa15.71■□□□□ 0.11
LIG1-213ENST00000596672 RAB3GAP2Q9H2M9 1393 aa15.71■□□□□ 0.11
LIG1-213ENST00000596672 RPGRIP1LQ68CZ1 1315 aa15.7■□□□□ 0.1
LIG1-213ENST00000596672 ASXL1Q8IXJ9 1541 aa15.7■□□□□ 0.1
LIG1-213ENST00000596672 RGL3Q3MIN7 710 aa15.7■□□□□ 0.1
LIG1-213ENST00000596672 AHDC1Q5TGY3 1603 aaPredicted RBP15.69■□□□□ 0.1
LIG1-213ENST00000596672 VGFO15240 615 aaPredicted RBP15.69■□□□□ 0.1
LIG1-213ENST00000596672 CADPS2Q86UW7 1296 aa15.69■□□□□ 0.1
LIG1-213ENST00000596672 DDX17Q92841 729 aaKnown RBP15.69■□□□□ 0.1
LIG1-213ENST00000596672 ADGRL3Q9HAR2 1447 aa15.68■□□□□ 0.1
LIG1-213ENST00000596672 LRP6O75581 1613 aa15.68■□□□□ 0.1
LIG1-213ENST00000596672 ATF3P18847 181 aa15.68■□□□□ 0.1
LIG1-213ENST00000596672 POTEAQ6S8J7 498 aa15.68■□□□□ 0.1
LIG1-213ENST00000596672 CCDC144AA2RUR9 1427 aa15.68■□□□□ 0.1
LIG1-213ENST00000596672 DCCP43146 1447 aa15.67■□□□□ 0.1
LIG1-213ENST00000596672 PRAG1Q86YV5 1406 aa15.67■□□□□ 0.1
LIG1-213ENST00000596672 PTCH1Q13635 1447 aa15.66■□□□□ 0.1
LIG1-213ENST00000596672 PHF23Q9BUL5 403 aaPredicted RBP15.65■□□□□ 0.1
LIG1-213ENST00000596672 NHSL1Q5SYE7 1610 aa15.65■□□□□ 0.1
LIG1-213ENST00000596672 JCADQ9P266 1359 aa15.64■□□□□ 0.09
LIG1-213ENST00000596672 TMEM132EQ6IEE7 984 aa15.64■□□□□ 0.09
LIG1-213ENST00000596672 PLEKHH1Q9ULM0 1364 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 PIK3C2GO75747 1445 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 ORAI2Q96SN7 254 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 C1orf167Q5SNV9 1468 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 SHPRHQ149N8 1683 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 ANKRD30BQ9BXX2 1392 aa15.62■□□□□ 0.09
LIG1-213ENST00000596672 NRXN1Q9ULB1 1477 aa15.61■□□□□ 0.09
LIG1-213ENST00000596672 WAPLQ7Z5K2 1190 aa15.61■□□□□ 0.09
LIG1-213ENST00000596672 STK26Q9P289 416 aa15.59■□□□□ 0.09
LIG1-213ENST00000596672 LRPPRCP42704 1394 aaKnown RBP15.59■□□□□ 0.09
LIG1-213ENST00000596672 TECPR2O15040 1411 aa15.59■□□□□ 0.09
LIG1-213ENST00000596672 LAMC1P11047 1609 aa15.58■□□□□ 0.09
LIG1-213ENST00000596672 CFAP70Q5T0N1 1121 aa15.57■□□□□ 0.08
LIG1-213ENST00000596672 C14orf93Q9H972 538 aaKnown RBP15.57■□□□□ 0.08
LIG1-213ENST00000596672 ABCC11Q96J66 1382 aa15.57■□□□□ 0.08
LIG1-213ENST00000596672 KNDC1Q76NI1 1749 aa15.56■□□□□ 0.08
LIG1-213ENST00000596672 YTHDC2Q9H6S0 1430 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms