RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 CERKQ8TCT0 537 aa21.62■■□□□ 1.05
VRK3-206ENST00000594090 HRCP23327 699 aa21.61■■□□□ 1.05
VRK3-206ENST00000594090 PLEKHG1Q9ULL1 1385 aa21.58■■□□□ 1.05
VRK3-206ENST00000594090 HDGFP51858 240 aaKnown RBP21.57■■□□□ 1.04
VRK3-206ENST00000594090 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.57■■□□□ 1.04
VRK3-206ENST00000594090 CPS1P31327 1500 aa21.57■■□□□ 1.04
VRK3-206ENST00000594090 PPP1R15AO75807 674 aaPredicted RBP21.56■■□□□ 1.04
VRK3-206ENST00000594090 CCDC144AA2RUR9 1427 aa21.56■■□□□ 1.04
VRK3-206ENST00000594090 STRCP1A6NGW2 1772 aa21.56■■□□□ 1.04
VRK3-206ENST00000594090 NEXMIFQ5QGS0 1516 aa21.55■■□□□ 1.04
VRK3-206ENST00000594090 IQSEC2Q5JU85 1478 aa21.55■■□□□ 1.04
VRK3-206ENST00000594090 ZNF326Q5BKZ1 582 aaKnown RBP21.54■■□□□ 1.04
VRK3-206ENST00000594090 NUTM2DQ5VT03 806 aaPredicted RBP21.53■■□□□ 1.04
VRK3-206ENST00000594090 SLC26A8Q96RN1 970 aa21.51■■□□□ 1.03
VRK3-206ENST00000594090 DIP2AQ14689 1571 aa21.5■■□□□ 1.03
VRK3-206ENST00000594090 FBXO41Q8TF61 875 aa21.5■■□□□ 1.03
VRK3-206ENST00000594090 BCANQ96GW7 911 aa21.5■■□□□ 1.03
VRK3-206ENST00000594090 SENP3Q9H4L4 574 aaPredicted RBP21.49■■□□□ 1.03
VRK3-206ENST00000594090 ADAMTS13Q76LX8 1427 aa21.49■■□□□ 1.03
VRK3-206ENST00000594090 SETBP1Q9Y6X0 1596 aa21.48■■□□□ 1.03
VRK3-206ENST00000594090 NRXN3Q9Y4C0 1643 aa21.48■■□□□ 1.03
VRK3-206ENST00000594090 PPLO60437 1756 aa21.48■■□□□ 1.03
VRK3-206ENST00000594090 SPATA31E1Q6ZUB1 1445 aa21.48■■□□□ 1.03
VRK3-206ENST00000594090 NWD1Q149M9 1564 aa21.48■■□□□ 1.03
VRK3-206ENST00000594090 TRIM26Q12899 539 aaPredicted RBP21.47■■□□□ 1.03
VRK3-206ENST00000594090 ILDR1Q86SU0 546 aaPredicted RBP21.46■■□□□ 1.03
VRK3-206ENST00000594090 ANKRD30BQ9BXX2 1392 aa21.46■■□□□ 1.03
VRK3-206ENST00000594090 LRRC7Q96NW7 1537 aa21.45■■□□□ 1.03
VRK3-206ENST00000594090 RPGRIP1LQ68CZ1 1315 aa21.45■■□□□ 1.02
VRK3-206ENST00000594090 IFT172Q9UG01 1749 aa21.45■■□□□ 1.02
VRK3-206ENST00000594090 TBX22Q9Y458 520 aa21.44■■□□□ 1.02
VRK3-206ENST00000594090 CHD2O14647 1828 aaKnown RBP21.43■■□□□ 1.02
VRK3-206ENST00000594090 NKTRP30414 1462 aaKnown RBP21.42■■□□□ 1.02
VRK3-206ENST00000594090 KCNA6P17658 529 aa21.41■■□□□ 1.02
VRK3-206ENST00000594090 VGFO15240 615 aaPredicted RBP21.4■■□□□ 1.02
VRK3-206ENST00000594090 PIK3R4Q99570 1358 aa21.4■■□□□ 1.02
VRK3-206ENST00000594090 RGL3Q3MIN7 710 aa21.39■■□□□ 1.02
VRK3-206ENST00000594090 XIRP1Q702N8 1843 aaKnown RBP21.39■■□□□ 1.01
VRK3-206ENST00000594090 SETD1AO15047 1707 aaKnown RBP21.38■■□□□ 1.01
VRK3-206ENST00000594090 PTPRUQ92729 1446 aa21.35■■□□□ 1.01
VRK3-206ENST00000594090 XRN1Q8IZH2 1706 aaKnown RBP21.35■■□□□ 1.01
VRK3-206ENST00000594090 ALKQ9UM73 1620 aa21.34■■□□□ 1.01
VRK3-206ENST00000594090 METP08581 1390 aa21.33■■□□□ 1.01
VRK3-206ENST00000594090 TMEM94Q12767 1356 aa21.33■■□□□ 1.01
VRK3-206ENST00000594090 ADGRF5Q8IZF2 1346 aa21.33■■□□□ 1
VRK3-206ENST00000594090 MYOM2P54296 1465 aa21.32■■□□□ 1
VRK3-206ENST00000594090 UBAP1LF5GYI3 381 aa21.32■■□□□ 1
VRK3-206ENST00000594090 PROSER2Q86WR7 435 aaPredicted RBP21.31■■□□□ 1
VRK3-206ENST00000594090 PIK3C2GO75747 1445 aa21.3■■□□□ 1
VRK3-206ENST00000594090 AMOTL2Q9Y2J4 779 aa21.29■■□□□ 1
VRK3-206ENST00000594090 NRXN1Q9ULB1 1477 aa21.28■■□□□ 1
VRK3-206ENST00000594090 RBM33Q96EV2 1170 aaKnown RBP21.28■■□□□ 1
VRK3-206ENST00000594090 DHX57Q6P158 1386 aaKnown RBP21.27■■□□□ 1
VRK3-206ENST00000594090 TOM1O60784 492 aa21.27■■□□□ 1
VRK3-206ENST00000594090 LAMC1P11047 1609 aa21.25■□□□□ 0.99
VRK3-206ENST00000594090 NCOA3Q9Y6Q9 1424 aa21.25■□□□□ 0.99
VRK3-206ENST00000594090 ASXL1Q8IXJ9 1541 aa21.24■□□□□ 0.99
VRK3-206ENST00000594090 PRAG1Q86YV5 1406 aa21.23■□□□□ 0.99
VRK3-206ENST00000594090 MSH6P52701 1360 aa21.22■□□□□ 0.99
VRK3-206ENST00000594090 PTCH1Q13635 1447 aa21.21■□□□□ 0.99
VRK3-206ENST00000594090 SCAF1Q9H7N4 1312 aaKnown RBP21.2■□□□□ 0.98
VRK3-206ENST00000594090 PIP4K2BP78356 416 aa21.2■□□□□ 0.98
VRK3-206ENST00000594090 DCAF11Q8TEB1 546 aa21.2■□□□□ 0.98
VRK3-206ENST00000594090 KNDC1Q76NI1 1749 aa21.19■□□□□ 0.98
VRK3-206ENST00000594090 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.19■□□□□ 0.98
VRK3-206ENST00000594090 ROBO2Q9HCK4 1378 aa21.17■□□□□ 0.98
VRK3-206ENST00000594090 C14orf37Q86TY3 774 aa21.17■□□□□ 0.98
VRK3-206ENST00000594090 STAC3Q96MF2 364 aa21.17■□□□□ 0.98
VRK3-206ENST00000594090 C14orf93Q9H972 538 aaKnown RBP21.17■□□□□ 0.98
VRK3-206ENST00000594090 KDM2AQ9Y2K7 1162 aa21.17■□□□□ 0.98
VRK3-206ENST00000594090 NALCNQ8IZF0 1738 aa21.17■□□□□ 0.98
VRK3-206ENST00000594090 TECPR2O15040 1411 aa21.16■□□□□ 0.98
VRK3-206ENST00000594090 LRPPRCP42704 1394 aaKnown RBP21.16■□□□□ 0.98
VRK3-206ENST00000594090 CFAP70Q5T0N1 1121 aa21.15■□□□□ 0.98
VRK3-206ENST00000594090 TMEM132EQ6IEE7 984 aa21.14■□□□□ 0.98
VRK3-206ENST00000594090 SIN3AQ96ST3 1273 aa21.14■□□□□ 0.98
VRK3-206ENST00000594090 ADGRL3Q9HAR2 1447 aa21.14■□□□□ 0.98
VRK3-206ENST00000594090 DCCP43146 1447 aa21.13■□□□□ 0.97
VRK3-206ENST00000594090 YTHDC2Q9H6S0 1430 aaKnown RBP21.13■□□□□ 0.97
VRK3-206ENST00000594090 PCGF6Q9BYE7 350 aa21.12■□□□□ 0.97
VRK3-206ENST00000594090 C19orf44Q9H6X5 657 aa21.12■□□□□ 0.97
VRK3-206ENST00000594090 ADGRB1O14514 1584 aa21.12■□□□□ 0.97
VRK3-206ENST00000594090 ABCC11Q96J66 1382 aa21.12■□□□□ 0.97
VRK3-206ENST00000594090 ROBO1Q9Y6N7 1651 aa21.11■□□□□ 0.97
VRK3-206ENST00000594090 STK26Q9P289 416 aa21.11■□□□□ 0.97
VRK3-206ENST00000594090 FAM135BQ49AJ0 1406 aa21.1■□□□□ 0.97
VRK3-206ENST00000594090 CADPS2Q86UW7 1296 aa21.1■□□□□ 0.97
VRK3-206ENST00000594090 ATF3P18847 181 aa21.09■□□□□ 0.97
VRK3-206ENST00000594090 NEUROD1Q13562 356 aa21.08■□□□□ 0.97
VRK3-206ENST00000594090 KIAA1210Q9ULL0 1709 aa21.08■□□□□ 0.96
VRK3-206ENST00000594090 HSPA1LP34931 641 aa21.07■□□□□ 0.96
VRK3-206ENST00000594090 SLAIN2Q9P270 581 aa21.07■□□□□ 0.96
VRK3-206ENST00000594090 L3MBTL2Q969R5 705 aa21.05■□□□□ 0.96
VRK3-206ENST00000594090 DLC1Q96QB1 1528 aa21.05■□□□□ 0.96
VRK3-206ENST00000594090 PLEKHH1Q9ULM0 1364 aa21.05■□□□□ 0.96
VRK3-206ENST00000594090 MST1RQ04912 1400 aa21.05■□□□□ 0.96
VRK3-206ENST00000594090 CDC42BPGQ6DT37 1551 aa21.03■□□□□ 0.96
VRK3-206ENST00000594090 WAPLQ7Z5K2 1190 aa21.03■□□□□ 0.96
VRK3-206ENST00000594090 SIRT1Q96EB6 747 aa21.02■□□□□ 0.96
VRK3-206ENST00000594090 ARHGEF28Q8N1W1 1705 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms