RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 ZFYVE9O95405 1425 aa28.79■■■□□ 2.2
LSM4-203ENST00000593829 KIF1BO60333 1816 aa28.78■■■□□ 2.2
LSM4-203ENST00000593829 ZNF326Q5BKZ1 582 aaKnown RBP28.77■■■□□ 2.2
LSM4-203ENST00000593829 ZEB1P37275 1124 aaPredicted RBP28.77■■■□□ 2.2
LSM4-203ENST00000593829 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.77■■■□□ 2.2
LSM4-203ENST00000593829 IQGAP1P46940 1657 aa28.76■■■□□ 2.19
LSM4-203ENST00000593829 PPP1R15AO75807 674 aaPredicted RBP28.75■■■□□ 2.19
LSM4-203ENST00000593829 ANKRD30BQ9BXX2 1392 aa28.73■■■□□ 2.19
LSM4-203ENST00000593829 NUTM2DQ5VT03 806 aaPredicted RBP28.7■■■□□ 2.18
LSM4-203ENST00000593829 PLEKHG1Q9ULL1 1385 aa28.68■■■□□ 2.18
LSM4-203ENST00000593829 BCANQ96GW7 911 aa28.67■■■□□ 2.18
LSM4-203ENST00000593829 RPGRIP1LQ68CZ1 1315 aa28.66■■■□□ 2.18
LSM4-203ENST00000593829 ZNF335Q9H4Z2 1342 aaPredicted RBP28.66■■■□□ 2.18
LSM4-203ENST00000593829 SPATA31E1Q6ZUB1 1445 aa28.65■■■□□ 2.18
LSM4-203ENST00000593829 NEXMIFQ5QGS0 1516 aa28.65■■■□□ 2.18
LSM4-203ENST00000593829 RGL3Q3MIN7 710 aa28.63■■■□□ 2.17
LSM4-203ENST00000593829 SLC26A8Q96RN1 970 aa28.62■■■□□ 2.17
LSM4-203ENST00000593829 SENP3Q9H4L4 574 aaPredicted RBP28.62■■■□□ 2.17
LSM4-203ENST00000593829 VGFO15240 615 aaPredicted RBP28.59■■■□□ 2.17
LSM4-203ENST00000593829 LTBP4Q8N2S1 1624 aa28.59■■■□□ 2.17
LSM4-203ENST00000593829 DHX57Q6P158 1386 aaKnown RBP28.56■■■□□ 2.16
LSM4-203ENST00000593829 TBX22Q9Y458 520 aa28.55■■■□□ 2.16
LSM4-203ENST00000593829 CERKQ8TCT0 537 aa28.55■■■□□ 2.16
LSM4-203ENST00000593829 PPLO60437 1756 aa28.55■■■□□ 2.16
LSM4-203ENST00000593829 ADAMTS13Q76LX8 1427 aa28.54■■■□□ 2.16
LSM4-203ENST00000593829 SETBP1Q9Y6X0 1596 aa28.52■■■□□ 2.16
LSM4-203ENST00000593829 DIP2AQ14689 1571 aa28.51■■■□□ 2.16
LSM4-203ENST00000593829 CPS1P31327 1500 aa28.51■■■□□ 2.15
LSM4-203ENST00000593829 NRXN3Q9Y4C0 1643 aa28.48■■■□□ 2.15
LSM4-203ENST00000593829 IFT172Q9UG01 1749 aa28.48■■■□□ 2.15
LSM4-203ENST00000593829 KCNA6P17658 529 aa28.47■■■□□ 2.15
LSM4-203ENST00000593829 STRCP1A6NGW2 1772 aa28.46■■■□□ 2.15
LSM4-203ENST00000593829 ADGRF5Q8IZF2 1346 aa28.46■■■□□ 2.15
LSM4-203ENST00000593829 PIK3R4Q99570 1358 aa28.45■■■□□ 2.14
LSM4-203ENST00000593829 MYOM2P54296 1465 aa28.41■■■□□ 2.14
LSM4-203ENST00000593829 IQSEC2Q5JU85 1478 aa28.41■■■□□ 2.14
LSM4-203ENST00000593829 NWD1Q149M9 1564 aa28.4■■■□□ 2.14
LSM4-203ENST00000593829 DCAF11Q8TEB1 546 aa28.4■■■□□ 2.14
LSM4-203ENST00000593829 SIN3AQ96ST3 1273 aa28.4■■■□□ 2.14
LSM4-203ENST00000593829 CHD2O14647 1828 aaKnown RBP28.39■■■□□ 2.14
LSM4-203ENST00000593829 METP08581 1390 aa28.39■■■□□ 2.13
LSM4-203ENST00000593829 LRRC7Q96NW7 1537 aa28.39■■■□□ 2.13
LSM4-203ENST00000593829 ALKQ9UM73 1620 aa28.38■■■□□ 2.13
LSM4-203ENST00000593829 STAC3Q96MF2 364 aa28.38■■■□□ 2.13
LSM4-203ENST00000593829 PIK3C2GO75747 1445 aa28.37■■■□□ 2.13
LSM4-203ENST00000593829 NKTRP30414 1462 aaKnown RBP28.37■■■□□ 2.13
LSM4-203ENST00000593829 KDM2AQ9Y2K7 1162 aa28.37■■■□□ 2.13
LSM4-203ENST00000593829 NRXN1Q9ULB1 1477 aa28.36■■■□□ 2.13
LSM4-203ENST00000593829 NEUROD1Q13562 356 aa28.36■■■□□ 2.13
LSM4-203ENST00000593829 AMOTL2Q9Y2J4 779 aa28.35■■■□□ 2.13
LSM4-203ENST00000593829 PROSER2Q86WR7 435 aaPredicted RBP28.35■■■□□ 2.13
LSM4-203ENST00000593829 PTPRUQ92729 1446 aa28.34■■■□□ 2.13
LSM4-203ENST00000593829 SETD1AO15047 1707 aaKnown RBP28.33■■■□□ 2.13
LSM4-203ENST00000593829 C14orf93Q9H972 538 aaKnown RBP28.3■■■□□ 2.12
LSM4-203ENST00000593829 TMEM94Q12767 1356 aa28.29■■■□□ 2.12
LSM4-203ENST00000593829 FBXO41Q8TF61 875 aa28.29■■■□□ 2.12
LSM4-203ENST00000593829 XRN1Q8IZH2 1706 aaKnown RBP28.28■■■□□ 2.12
LSM4-203ENST00000593829 CFAP70Q5T0N1 1121 aa28.26■■■□□ 2.11
LSM4-203ENST00000593829 L3MBTL2Q969R5 705 aa28.26■■■□□ 2.11
LSM4-203ENST00000593829 RBM33Q96EV2 1170 aaKnown RBP28.26■■■□□ 2.11
LSM4-203ENST00000593829 LAMC1P11047 1609 aa28.24■■■□□ 2.11
LSM4-203ENST00000593829 XIRP1Q702N8 1843 aaKnown RBP28.24■■■□□ 2.11
LSM4-203ENST00000593829 UBAP1LF5GYI3 381 aa28.23■■■□□ 2.11
LSM4-203ENST00000593829 TMEM132EQ6IEE7 984 aa28.23■■■□□ 2.11
LSM4-203ENST00000593829 NCOA3Q9Y6Q9 1424 aa28.21■■■□□ 2.11
LSM4-203ENST00000593829 ASXL1Q8IXJ9 1541 aa28.2■■■□□ 2.11
LSM4-203ENST00000593829 PRAG1Q86YV5 1406 aa28.19■■■□□ 2.1
LSM4-203ENST00000593829 LRPPRCP42704 1394 aaKnown RBP28.19■■■□□ 2.1
LSM4-203ENST00000593829 CLSPNQ9HAW4 1339 aa28.19■■■□□ 2.1
LSM4-203ENST00000593829 TOM1O60784 492 aa28.19■■■□□ 2.1
LSM4-203ENST00000593829 PTCH1Q13635 1447 aa28.18■■■□□ 2.1
LSM4-203ENST00000593829 C14orf37Q86TY3 774 aa28.18■■■□□ 2.1
LSM4-203ENST00000593829 STK26Q9P289 416 aa28.18■■■□□ 2.1
LSM4-203ENST00000593829 TONSLQ96HA7 1378 aa28.17■■■□□ 2.1
LSM4-203ENST00000593829 YTHDC2Q9H6S0 1430 aaKnown RBP28.17■■■□□ 2.1
LSM4-203ENST00000593829 MSH6P52701 1360 aa28.17■■■□□ 2.1
LSM4-203ENST00000593829 ROBO2Q9HCK4 1378 aa28.16■■■□□ 2.1
LSM4-203ENST00000593829 ILDR1Q86SU0 546 aaPredicted RBP28.16■■■□□ 2.1
LSM4-203ENST00000593829 ABCC11Q96J66 1382 aa28.15■■■□□ 2.1
LSM4-203ENST00000593829 TECPR2O15040 1411 aa28.14■■■□□ 2.1
LSM4-203ENST00000593829 CCER1Q8TC90 406 aaPredicted RBP28.14■■■□□ 2.09
LSM4-203ENST00000593829 C19orf44Q9H6X5 657 aa28.12■■■□□ 2.09
LSM4-203ENST00000593829 ADGRB1O14514 1584 aa28.12■■■□□ 2.09
LSM4-203ENST00000593829 PELP1Q8IZL8 1130 aaKnown RBP28.11■■■□□ 2.09
LSM4-203ENST00000593829 KNDC1Q76NI1 1749 aa28.1■■■□□ 2.09
LSM4-203ENST00000593829 KIAA1210Q9ULL0 1709 aa28.09■■■□□ 2.09
LSM4-203ENST00000593829 PIP4K2BP78356 416 aa28.08■■■□□ 2.09
LSM4-203ENST00000593829 SIRT1Q96EB6 747 aa28.08■■■□□ 2.09
LSM4-203ENST00000593829 ADGRL3Q9HAR2 1447 aa28.07■■■□□ 2.08
LSM4-203ENST00000593829 SCAF1Q9H7N4 1312 aaKnown RBP28.06■■■□□ 2.08
LSM4-203ENST00000593829 ATF3P18847 181 aa28.06■■■□□ 2.08
LSM4-203ENST00000593829 CADPS2Q86UW7 1296 aa28.06■■■□□ 2.08
LSM4-203ENST00000593829 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.05■■■□□ 2.08
LSM4-203ENST00000593829 WAPLQ7Z5K2 1190 aa28.05■■■□□ 2.08
LSM4-203ENST00000593829 FAM135BQ49AJ0 1406 aa28.05■■■□□ 2.08
LSM4-203ENST00000593829 NBPF1Q3BBV0 1214 aa28.04■■■□□ 2.08
LSM4-203ENST00000593829 DCCP43146 1447 aa28.03■■■□□ 2.08
LSM4-203ENST00000593829 TRAK1Q9UPV9 953 aa28.03■■■□□ 2.08
LSM4-203ENST00000593829 DLC1Q96QB1 1528 aa28.02■■■□□ 2.08
LSM4-203ENST00000593829 NALCNQ8IZF0 1738 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms