RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 SPATA31E1Q6ZUB1 1445 aa18.4■□□□□ 0.54
VMP1-202ENST00000585847 ARHGAP23Q9P227 1491 aa18.39■□□□□ 0.54
VMP1-202ENST00000585847 SLIT1O75093 1534 aa18.38■□□□□ 0.53
VMP1-202ENST00000585847 NEURL4Q96JN8 1562 aa18.38■□□□□ 0.53
VMP1-202ENST00000585847 SIN3AQ96ST3 1273 aa18.36■□□□□ 0.53
VMP1-202ENST00000585847 ZFYVE9O95405 1425 aa18.35■□□□□ 0.53
VMP1-202ENST00000585847 THEMISQ8N1K5 641 aaPredicted RBP18.35■□□□□ 0.53
VMP1-202ENST00000585847 TMEM2Q9UHN6 1383 aa18.34■□□□□ 0.53
VMP1-202ENST00000585847 CHGAP10645 457 aaKnown RBP18.34■□□□□ 0.53
VMP1-202ENST00000585847 NEXMIFQ5QGS0 1516 aa18.33■□□□□ 0.53
VMP1-202ENST00000585847 IFT172Q9UG01 1749 aa18.33■□□□□ 0.52
VMP1-202ENST00000585847 LTKP29376 864 aa18.32■□□□□ 0.52
VMP1-202ENST00000585847 STAG3Q9UJ98 1225 aa18.32■□□□□ 0.52
VMP1-202ENST00000585847 PPLO60437 1756 aa18.32■□□□□ 0.52
VMP1-202ENST00000585847 POLR1AO95602 1720 aaPredicted RBP18.32■□□□□ 0.52
VMP1-202ENST00000585847 RIMS2Q9UQ26 1411 aa18.32■□□□□ 0.52
VMP1-202ENST00000585847 SCAF1Q9H7N4 1312 aaKnown RBP18.31■□□□□ 0.52
VMP1-202ENST00000585847 RGL3Q3MIN7 710 aa18.28■□□□□ 0.52
VMP1-202ENST00000585847 SCAF11Q99590 1463 aaKnown RBP18.27■□□□□ 0.52
VMP1-202ENST00000585847 MED14O60244 1454 aa18.26■□□□□ 0.51
VMP1-202ENST00000585847 ZNF326Q5BKZ1 582 aaKnown RBP18.26■□□□□ 0.51
VMP1-202ENST00000585847 NUTM2DQ5VT03 806 aaPredicted RBP18.26■□□□□ 0.51
VMP1-202ENST00000585847 TXNDC2Q86VQ3 553 aa18.26■□□□□ 0.51
VMP1-202ENST00000585847 CPS1P31327 1500 aa18.25■□□□□ 0.51
VMP1-202ENST00000585847 PIP4K2BP78356 416 aa18.25■□□□□ 0.51
VMP1-202ENST00000585847 NEUROD1Q13562 356 aa18.25■□□□□ 0.51
VMP1-202ENST00000585847 ANKLE2Q86XL3 938 aa18.25■□□□□ 0.51
VMP1-202ENST00000585847 RPGRIP1LQ68CZ1 1315 aa18.24■□□□□ 0.51
VMP1-202ENST00000585847 NRXN3Q9Y4C0 1643 aa18.24■□□□□ 0.51
VMP1-202ENST00000585847 TOM1O60784 492 aa18.24■□□□□ 0.51
VMP1-202ENST00000585847 ADGRF5Q8IZF2 1346 aa18.22■□□□□ 0.51
VMP1-202ENST00000585847 IQGAP1P46940 1657 aa18.22■□□□□ 0.51
VMP1-202ENST00000585847 NRXN1Q9ULB1 1477 aa18.21■□□□□ 0.51
VMP1-202ENST00000585847 PLEKHG1Q9ULL1 1385 aa18.21■□□□□ 0.51
VMP1-202ENST00000585847 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.21■□□□□ 0.51
VMP1-202ENST00000585847 NPHP4O75161 1426 aaPredicted RBP18.21■□□□□ 0.51
VMP1-202ENST00000585847 MYOM2P54296 1465 aa18.2■□□□□ 0.5
VMP1-202ENST00000585847 L3MBTL2Q969R5 705 aa18.2■□□□□ 0.5
VMP1-202ENST00000585847 EID1Q9Y6B2 187 aa18.2■□□□□ 0.5
VMP1-202ENST00000585847 SETD1AO15047 1707 aaKnown RBP18.19■□□□□ 0.5
VMP1-202ENST00000585847 HSPA1LP34931 641 aa18.19■□□□□ 0.5
VMP1-202ENST00000585847 ADAMTS13Q76LX8 1427 aa18.19■□□□□ 0.5
VMP1-202ENST00000585847 SETBP1Q9Y6X0 1596 aa18.19■□□□□ 0.5
VMP1-202ENST00000585847 HDGFP51858 240 aaKnown RBP18.17■□□□□ 0.5
VMP1-202ENST00000585847 DCAF11Q8TEB1 546 aa18.17■□□□□ 0.5
VMP1-202ENST00000585847 VGFO15240 615 aaPredicted RBP18.16■□□□□ 0.5
VMP1-202ENST00000585847 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
VMP1-202ENST00000585847 PIK3C2GO75747 1445 aa18.15■□□□□ 0.5
VMP1-202ENST00000585847 PPP1R15AO75807 674 aaPredicted RBP18.15■□□□□ 0.5
VMP1-202ENST00000585847 KDM2AQ9Y2K7 1162 aa18.15■□□□□ 0.5
VMP1-202ENST00000585847 MED1Q15648 1581 aaPredicted RBP18.15■□□□□ 0.5
VMP1-202ENST00000585847 TONSLQ96HA7 1378 aa18.15■□□□□ 0.5
VMP1-202ENST00000585847 ALKQ9UM73 1620 aa18.14■□□□□ 0.49
VMP1-202ENST00000585847 SLC26A8Q96RN1 970 aa18.12■□□□□ 0.49
VMP1-202ENST00000585847 PRAG1Q86YV5 1406 aa18.12■□□□□ 0.49
VMP1-202ENST00000585847 ASXL1Q8IXJ9 1541 aa18.12■□□□□ 0.49
VMP1-202ENST00000585847 STRCP1A6NGW2 1772 aa18.12■□□□□ 0.49
VMP1-202ENST00000585847 STAC3Q96MF2 364 aa18.11■□□□□ 0.49
VMP1-202ENST00000585847 PHF23Q9BUL5 403 aaPredicted RBP18.11■□□□□ 0.49
VMP1-202ENST00000585847 DIP2AQ14689 1571 aa18.11■□□□□ 0.49
VMP1-202ENST00000585847 NBPF8Q3BBV2 869 aa18.1■□□□□ 0.49
VMP1-202ENST00000585847 TBX22Q9Y458 520 aa18.1■□□□□ 0.49
VMP1-202ENST00000585847 PTPRUQ92729 1446 aa18.09■□□□□ 0.49
VMP1-202ENST00000585847 METP08581 1390 aa18.09■□□□□ 0.49
VMP1-202ENST00000585847 CHD2O14647 1828 aaKnown RBP18.09■□□□□ 0.49
VMP1-202ENST00000585847 CFAP70Q5T0N1 1121 aa18.08■□□□□ 0.48
VMP1-202ENST00000585847 C14orf93Q9H972 538 aaKnown RBP18.08■□□□□ 0.48
VMP1-202ENST00000585847 KIAA1210Q9ULL0 1709 aa18.06■□□□□ 0.48
VMP1-202ENST00000585847 LAMC1P11047 1609 aa18.06■□□□□ 0.48
VMP1-202ENST00000585847 TRPM1Q7Z4N2 1603 aa18.06■□□□□ 0.48
VMP1-202ENST00000585847 ADGRB1O14514 1584 aa18.06■□□□□ 0.48
VMP1-202ENST00000585847 BCANQ96GW7 911 aa18.06■□□□□ 0.48
VMP1-202ENST00000585847 NWD1Q149M9 1564 aa18.05■□□□□ 0.48
VMP1-202ENST00000585847 XRN1Q8IZH2 1706 aaKnown RBP18.03■□□□□ 0.48
VMP1-202ENST00000585847 LRRC7Q96NW7 1537 aa18.03■□□□□ 0.48
VMP1-202ENST00000585847 PIK3R4Q99570 1358 aa18.03■□□□□ 0.48
VMP1-202ENST00000585847 NBPF1Q3BBV0 1214 aa18.02■□□□□ 0.48
VMP1-202ENST00000585847 TMEM132EQ6IEE7 984 aa18.02■□□□□ 0.48
VMP1-202ENST00000585847 KCNA6P17658 529 aa18■□□□□ 0.47
VMP1-202ENST00000585847 KNDC1Q76NI1 1749 aa17.99■□□□□ 0.47
VMP1-202ENST00000585847 XIRP1Q702N8 1843 aaKnown RBP17.98■□□□□ 0.47
VMP1-202ENST00000585847 RALGAPBQ86X10 1494 aa17.98■□□□□ 0.47
VMP1-202ENST00000585847 YTHDC2Q9H6S0 1430 aaKnown RBP17.98■□□□□ 0.47
VMP1-202ENST00000585847 LRPPRCP42704 1394 aaKnown RBP17.97■□□□□ 0.47
VMP1-202ENST00000585847 AMOTL2Q9Y2J4 779 aa17.97■□□□□ 0.47
VMP1-202ENST00000585847 TECPR2O15040 1411 aa17.97■□□□□ 0.47
VMP1-202ENST00000585847 GPRASP1Q5JY77 1395 aa17.96■□□□□ 0.47
VMP1-202ENST00000585847 ABCC11Q96J66 1382 aa17.95■□□□□ 0.46
VMP1-202ENST00000585847 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
VMP1-202ENST00000585847 ROBO2Q9HCK4 1378 aa17.94■□□□□ 0.46
VMP1-202ENST00000585847 ARHGEF28Q8N1W1 1705 aaKnown RBP17.93■□□□□ 0.46
VMP1-202ENST00000585847 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
VMP1-202ENST00000585847 PTCH1Q13635 1447 aa17.92■□□□□ 0.46
VMP1-202ENST00000585847 STK26Q9P289 416 aa17.92■□□□□ 0.46
VMP1-202ENST00000585847 ROCK2O75116 1388 aaKnown RBP17.91■□□□□ 0.46
VMP1-202ENST00000585847 PLEKHH1Q9ULM0 1364 aa17.91■□□□□ 0.46
VMP1-202ENST00000585847 RBM33Q96EV2 1170 aaKnown RBP17.9■□□□□ 0.46
VMP1-202ENST00000585847 TRAK1Q9UPV9 953 aa17.89■□□□□ 0.45
VMP1-202ENST00000585847 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.89■□□□□ 0.45
VMP1-202ENST00000585847 WAPLQ7Z5K2 1190 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms