RNA–Protein interactions for RNA: ENST00000579329.1

LIMD2-207, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 920 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-207ENST00000579329 CPS1P31327 1500 aa35.7■■■■□ 3.31
LIMD2-207ENST00000579329 TRPM2O94759 1503 aa35.69■■■■□ 3.3
LIMD2-207ENST00000579329 SCAF1Q9H7N4 1312 aaKnown RBP35.67■■■■□ 3.3
LIMD2-207ENST00000579329 ZFYVE9O95405 1425 aa35.65■■■■□ 3.3
LIMD2-207ENST00000579329 PIP4K2BP78356 416 aa35.64■■■■□ 3.3
LIMD2-207ENST00000579329 RIMS2Q9UQ26 1411 aa35.64■■■■□ 3.3
LIMD2-207ENST00000579329 HSPA1LP34931 641 aa35.63■■■■□ 3.29
LIMD2-207ENST00000579329 RAB3GAP2Q9H2M9 1393 aa35.63■■■■□ 3.29
LIMD2-207ENST00000579329 HDGFP51858 240 aaKnown RBP35.62■■■■□ 3.29
LIMD2-207ENST00000579329 CLTCL1P53675 1640 aa35.61■■■■□ 3.29
LIMD2-207ENST00000579329 MED1Q15648 1581 aaPredicted RBP35.59■■■■□ 3.29
LIMD2-207ENST00000579329 TOM1O60784 492 aa35.59■■■■□ 3.29
LIMD2-207ENST00000579329 MPHOSPH9Q99550 1183 aa35.59■■■■□ 3.29
LIMD2-207ENST00000579329 ABCF1Q8NE71 845 aaKnown RBP eCLIP35.57■■■■□ 3.28
LIMD2-207ENST00000579329 PPP1R15AO75807 674 aaPredicted RBP35.56■■■■□ 3.28
LIMD2-207ENST00000579329 PLEKHG1Q9ULL1 1385 aa35.53■■■■□ 3.28
LIMD2-207ENST00000579329 STRCP1A6NGW2 1772 aa35.51■■■■□ 3.28
LIMD2-207ENST00000579329 ALKQ9UM73 1620 aa35.51■■■■□ 3.28
LIMD2-207ENST00000579329 FOXD1Q16676 465 aa35.51■■■■□ 3.28
LIMD2-207ENST00000579329 KIF1BO60333 1816 aa35.5■■■■□ 3.27
LIMD2-207ENST00000579329 BCANQ96GW7 911 aa35.49■■■■□ 3.27
LIMD2-207ENST00000579329 ZNF326Q5BKZ1 582 aaKnown RBP35.47■■■■□ 3.27
LIMD2-207ENST00000579329 HRCP23327 699 aa35.46■■■■□ 3.27
LIMD2-207ENST00000579329 SLC26A8Q96RN1 970 aa35.46■■■■□ 3.27
LIMD2-207ENST00000579329 NUTM2DQ5VT03 806 aaPredicted RBP35.45■■■■□ 3.27
LIMD2-207ENST00000579329 CCDC144AA2RUR9 1427 aa35.42■■■■□ 3.26
LIMD2-207ENST00000579329 SENP3Q9H4L4 574 aaPredicted RBP35.4■■■■□ 3.26
LIMD2-207ENST00000579329 NEXMIFQ5QGS0 1516 aa35.39■■■■□ 3.26
LIMD2-207ENST00000579329 DIP2AQ14689 1571 aa35.37■■■■□ 3.25
LIMD2-207ENST00000579329 LRRC7Q96NW7 1537 aa35.37■■■■□ 3.25
LIMD2-207ENST00000579329 ADAMTS13Q76LX8 1427 aa35.35■■■■□ 3.25
LIMD2-207ENST00000579329 TBX22Q9Y458 520 aa35.35■■■■□ 3.25
LIMD2-207ENST00000579329 KCNA6P17658 529 aa35.34■■■■□ 3.25
LIMD2-207ENST00000579329 NWD1Q149M9 1564 aa35.33■■■■□ 3.25
LIMD2-207ENST00000579329 RPGRIP1LQ68CZ1 1315 aa35.31■■■■□ 3.24
LIMD2-207ENST00000579329 SETBP1Q9Y6X0 1596 aa35.3■■■■□ 3.24
LIMD2-207ENST00000579329 NKTRP30414 1462 aaKnown RBP35.28■■■■□ 3.24
LIMD2-207ENST00000579329 PHF23Q9BUL5 403 aaPredicted RBP35.27■■■■□ 3.24
LIMD2-207ENST00000579329 NRXN3Q9Y4C0 1643 aa35.27■■■■□ 3.24
LIMD2-207ENST00000579329 PIK3R4Q99570 1358 aa35.25■■■■□ 3.23
LIMD2-207ENST00000579329 SPATA31E1Q6ZUB1 1445 aa35.25■■■■□ 3.23
LIMD2-207ENST00000579329 CHD2O14647 1828 aaKnown RBP35.25■■■■□ 3.23
LIMD2-207ENST00000579329 XIRP1Q702N8 1843 aaKnown RBP35.25■■■■□ 3.23
LIMD2-207ENST00000579329 VGFO15240 615 aaPredicted RBP35.24■■■■□ 3.23
LIMD2-207ENST00000579329 PPLO60437 1756 aa35.23■■■■□ 3.23
LIMD2-207ENST00000579329 PROSER2Q86WR7 435 aaPredicted RBP35.19■■■■□ 3.22
LIMD2-207ENST00000579329 ANKRD30BQ9BXX2 1392 aa35.19■■■■□ 3.22
LIMD2-207ENST00000579329 TMEM94Q12767 1356 aa35.18■■■■□ 3.22
LIMD2-207ENST00000579329 RGL3Q3MIN7 710 aa35.18■■■■□ 3.22
LIMD2-207ENST00000579329 IFT172Q9UG01 1749 aa35.13■■■■□ 3.21
LIMD2-207ENST00000579329 PTPRUQ92729 1446 aa35.12■■■■□ 3.21
LIMD2-207ENST00000579329 METP08581 1390 aa35.1■■■■□ 3.21
LIMD2-207ENST00000579329 AMOTL2Q9Y2J4 779 aa35.09■■■■□ 3.21
LIMD2-207ENST00000579329 TRIM26Q12899 539 aaPredicted RBP35.08■■■■□ 3.21
LIMD2-207ENST00000579329 XRN1Q8IZH2 1706 aaKnown RBP35.07■■■■□ 3.2
LIMD2-207ENST00000579329 RBM33Q96EV2 1170 aaKnown RBP35.07■■■■□ 3.2
LIMD2-207ENST00000579329 ADGRF5Q8IZF2 1346 aa35.06■■■■□ 3.2
LIMD2-207ENST00000579329 SETD1AO15047 1707 aaKnown RBP35.05■■■■□ 3.2
LIMD2-207ENST00000579329 NCOA3Q9Y6Q9 1424 aa35.04■■■■□ 3.2
LIMD2-207ENST00000579329 MSH6P52701 1360 aa35.01■■■■□ 3.2
LIMD2-207ENST00000579329 MYOM2P54296 1465 aa34.99■■■■□ 3.19
LIMD2-207ENST00000579329 PIK3C2GO75747 1445 aa34.98■■■■□ 3.19
LIMD2-207ENST00000579329 RGS17Q9UGC6 210 aaPredicted RBP34.97■■■■□ 3.19
LIMD2-207ENST00000579329 C14orf37Q86TY3 774 aa34.95■■■■□ 3.19
LIMD2-207ENST00000579329 NRXN1Q9ULB1 1477 aa34.93■■■■□ 3.18
LIMD2-207ENST00000579329 FAM135BQ49AJ0 1406 aa34.91■■■■□ 3.18
LIMD2-207ENST00000579329 PRAG1Q86YV5 1406 aa34.9■■■■□ 3.18
LIMD2-207ENST00000579329 ROBO1Q9Y6N7 1651 aa34.9■■■■□ 3.18
LIMD2-207ENST00000579329 PTCH1Q13635 1447 aa34.89■■■■□ 3.18
LIMD2-207ENST00000579329 C19orf44Q9H6X5 657 aa34.88■■■■□ 3.17
LIMD2-207ENST00000579329 LAMC1P11047 1609 aa34.85■■■■□ 3.17
LIMD2-207ENST00000579329 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.85■■■■□ 3.17
LIMD2-207ENST00000579329 ASXL1Q8IXJ9 1541 aa34.84■■■■□ 3.17
LIMD2-207ENST00000579329 STAC3Q96MF2 364 aa34.83■■■■□ 3.17
LIMD2-207ENST00000579329 C14orf93Q9H972 538 aaKnown RBP34.83■■■■□ 3.17
LIMD2-207ENST00000579329 ROBO2Q9HCK4 1378 aa34.83■■■■□ 3.17
LIMD2-207ENST00000579329 CADPS2Q86UW7 1296 aa34.82■■■■□ 3.16
LIMD2-207ENST00000579329 DCAF11Q8TEB1 546 aa34.82■■■■□ 3.16
LIMD2-207ENST00000579329 DCCP43146 1447 aa34.81■■■■□ 3.16
LIMD2-207ENST00000579329 ATF3P18847 181 aa34.81■■■■□ 3.16
LIMD2-207ENST00000579329 DHX57Q6P158 1386 aaKnown RBP34.81■■■■□ 3.16
LIMD2-207ENST00000579329 ADGRL3Q9HAR2 1447 aa34.81■■■■□ 3.16
LIMD2-207ENST00000579329 LRPPRCP42704 1394 aaKnown RBP34.8■■■■□ 3.16
LIMD2-207ENST00000579329 SLAIN2Q9P270 581 aa34.79■■■■□ 3.16
LIMD2-207ENST00000579329 KDM2AQ9Y2K7 1162 aa34.79■■■■□ 3.16
LIMD2-207ENST00000579329 CFAP70Q5T0N1 1121 aa34.77■■■■□ 3.16
LIMD2-207ENST00000579329 TMEM132EQ6IEE7 984 aa34.77■■■■□ 3.16
LIMD2-207ENST00000579329 TECPR2O15040 1411 aa34.77■■■■□ 3.16
LIMD2-207ENST00000579329 NALCNQ8IZF0 1738 aa34.76■■■■□ 3.16
LIMD2-207ENST00000579329 KNDC1Q76NI1 1749 aa34.75■■■■□ 3.15
LIMD2-207ENST00000579329 ABCC11Q96J66 1382 aa34.74■■■■□ 3.15
LIMD2-207ENST00000579329 YTHDC2Q9H6S0 1430 aaKnown RBP34.74■■■■□ 3.15
LIMD2-207ENST00000579329 POTEAQ6S8J7 498 aa34.74■■■■□ 3.15
LIMD2-207ENST00000579329 STK26Q9P289 416 aa34.74■■■■□ 3.15
LIMD2-207ENST00000579329 PHLPP1O60346 1717 aa34.72■■■■□ 3.15
LIMD2-207ENST00000579329 MST1RQ04912 1400 aa34.65■■■■□ 3.14
LIMD2-207ENST00000579329 SIN3AQ96ST3 1273 aa34.65■■■■□ 3.14
LIMD2-207ENST00000579329 ADGRB1O14514 1584 aa34.65■■■■□ 3.14
LIMD2-207ENST00000579329 SIRT1Q96EB6 747 aa34.63■■■■□ 3.13
LIMD2-207ENST00000579329 WAPLQ7Z5K2 1190 aa34.61■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms