RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 KIF1BO60333 1816 aa21.57■■□□□ 1.04
MKS1-207ENST00000578789 RIMS2Q9UQ26 1411 aa21.57■■□□□ 1.04
MKS1-207ENST00000578789 CPS1P31327 1500 aa21.56■■□□□ 1.04
MKS1-207ENST00000578789 MPHOSPH9Q99550 1183 aa21.54■■□□□ 1.04
MKS1-207ENST00000578789 STRCP1A6NGW2 1772 aa21.53■■□□□ 1.04
MKS1-207ENST00000578789 CHGAP10645 457 aaKnown RBP21.53■■□□□ 1.04
MKS1-207ENST00000578789 PLEKHG1Q9ULL1 1385 aa21.52■■□□□ 1.04
MKS1-207ENST00000578789 HRCP23327 699 aa21.51■■□□□ 1.03
MKS1-207ENST00000578789 FBXO41Q8TF61 875 aa21.51■■□□□ 1.03
MKS1-207ENST00000578789 HDGFP51858 240 aaKnown RBP21.5■■□□□ 1.03
MKS1-207ENST00000578789 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.5■■□□□ 1.03
MKS1-207ENST00000578789 NEXMIFQ5QGS0 1516 aa21.5■■□□□ 1.03
MKS1-207ENST00000578789 FOXD1Q16676 465 aa21.48■■□□□ 1.03
MKS1-207ENST00000578789 DIP2AQ14689 1571 aa21.48■■□□□ 1.03
MKS1-207ENST00000578789 NWD1Q149M9 1564 aa21.47■■□□□ 1.03
MKS1-207ENST00000578789 PPP1R15AO75807 674 aaPredicted RBP21.46■■□□□ 1.03
MKS1-207ENST00000578789 CCDC144AA2RUR9 1427 aa21.45■■□□□ 1.02
MKS1-207ENST00000578789 NRXN3Q9Y4C0 1643 aa21.44■■□□□ 1.02
MKS1-207ENST00000578789 ADAMTS13Q76LX8 1427 aa21.44■■□□□ 1.02
MKS1-207ENST00000578789 SETBP1Q9Y6X0 1596 aa21.44■■□□□ 1.02
MKS1-207ENST00000578789 PPLO60437 1756 aa21.43■■□□□ 1.02
MKS1-207ENST00000578789 LRRC7Q96NW7 1537 aa21.42■■□□□ 1.02
MKS1-207ENST00000578789 ZNF326Q5BKZ1 582 aaKnown RBP21.41■■□□□ 1.02
MKS1-207ENST00000578789 SLC26A8Q96RN1 970 aa21.41■■□□□ 1.02
MKS1-207ENST00000578789 CHD2O14647 1828 aaKnown RBP21.41■■□□□ 1.02
MKS1-207ENST00000578789 SPATA31E1Q6ZUB1 1445 aa21.4■■□□□ 1.02
MKS1-207ENST00000578789 NUTM2DQ5VT03 806 aaPredicted RBP21.4■■□□□ 1.02
MKS1-207ENST00000578789 NKTRP30414 1462 aaKnown RBP21.39■■□□□ 1.02
MKS1-207ENST00000578789 IFT172Q9UG01 1749 aa21.39■■□□□ 1.01
MKS1-207ENST00000578789 XIRP1Q702N8 1843 aaKnown RBP21.39■■□□□ 1.01
MKS1-207ENST00000578789 TBX22Q9Y458 520 aa21.38■■□□□ 1.01
MKS1-207ENST00000578789 RPGRIP1LQ68CZ1 1315 aa21.37■■□□□ 1.01
MKS1-207ENST00000578789 KCNA6P17658 529 aa21.37■■□□□ 1.01
MKS1-207ENST00000578789 BCANQ96GW7 911 aa21.37■■□□□ 1.01
MKS1-207ENST00000578789 PIK3R4Q99570 1358 aa21.36■■□□□ 1.01
MKS1-207ENST00000578789 ANKRD30BQ9BXX2 1392 aa21.35■■□□□ 1.01
MKS1-207ENST00000578789 SETD1AO15047 1707 aaKnown RBP21.34■■□□□ 1.01
MKS1-207ENST00000578789 ALKQ9UM73 1620 aa21.32■■□□□ 1
MKS1-207ENST00000578789 XRN1Q8IZH2 1706 aaKnown RBP21.32■■□□□ 1
MKS1-207ENST00000578789 VGFO15240 615 aaPredicted RBP21.3■■□□□ 1
MKS1-207ENST00000578789 PTPRUQ92729 1446 aa21.29■■□□□ 1
MKS1-207ENST00000578789 TMEM94Q12767 1356 aa21.28■■□□□ 1
MKS1-207ENST00000578789 UBAP1LF5GYI3 381 aa21.28■■□□□ 1
MKS1-207ENST00000578789 METP08581 1390 aa21.25■□□□□ 0.99
MKS1-207ENST00000578789 TRIM26Q12899 539 aaPredicted RBP21.25■□□□□ 0.99
MKS1-207ENST00000578789 MYOM2P54296 1465 aa21.25■□□□□ 0.99
MKS1-207ENST00000578789 NCOA3Q9Y6Q9 1424 aa21.24■□□□□ 0.99
MKS1-207ENST00000578789 RGL3Q3MIN7 710 aa21.24■□□□□ 0.99
MKS1-207ENST00000578789 TOM1O60784 492 aa21.23■□□□□ 0.99
MKS1-207ENST00000578789 PROSER2Q86WR7 435 aaPredicted RBP21.23■□□□□ 0.99
MKS1-207ENST00000578789 NRXN1Q9ULB1 1477 aa21.23■□□□□ 0.99
MKS1-207ENST00000578789 PIK3C2GO75747 1445 aa21.22■□□□□ 0.99
MKS1-207ENST00000578789 PRAG1Q86YV5 1406 aa21.22■□□□□ 0.99
MKS1-207ENST00000578789 ADGRF5Q8IZF2 1346 aa21.22■□□□□ 0.99
MKS1-207ENST00000578789 AMOTL2Q9Y2J4 779 aa21.21■□□□□ 0.99
MKS1-207ENST00000578789 LAMC1P11047 1609 aa21.18■□□□□ 0.98
MKS1-207ENST00000578789 PTCH1Q13635 1447 aa21.17■□□□□ 0.98
MKS1-207ENST00000578789 ASXL1Q8IXJ9 1541 aa21.17■□□□□ 0.98
MKS1-207ENST00000578789 MSH6P52701 1360 aa21.16■□□□□ 0.98
MKS1-207ENST00000578789 RBM33Q96EV2 1170 aaKnown RBP21.16■□□□□ 0.98
MKS1-207ENST00000578789 KNDC1Q76NI1 1749 aa21.15■□□□□ 0.98
MKS1-207ENST00000578789 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.15■□□□□ 0.98
MKS1-207ENST00000578789 DHX57Q6P158 1386 aaKnown RBP21.12■□□□□ 0.97
MKS1-207ENST00000578789 PIP4K2BP78356 416 aa21.12■□□□□ 0.97
MKS1-207ENST00000578789 NALCNQ8IZF0 1738 aa21.12■□□□□ 0.97
MKS1-207ENST00000578789 TECPR2O15040 1411 aa21.11■□□□□ 0.97
MKS1-207ENST00000578789 DCCP43146 1447 aa21.11■□□□□ 0.97
MKS1-207ENST00000578789 SCAF1Q9H7N4 1312 aaKnown RBP21.09■□□□□ 0.97
MKS1-207ENST00000578789 STAC3Q96MF2 364 aa21.09■□□□□ 0.97
MKS1-207ENST00000578789 FAM135BQ49AJ0 1406 aa21.09■□□□□ 0.97
MKS1-207ENST00000578789 ADGRL3Q9HAR2 1447 aa21.09■□□□□ 0.97
MKS1-207ENST00000578789 ROBO2Q9HCK4 1378 aa21.09■□□□□ 0.97
MKS1-207ENST00000578789 ROBO1Q9Y6N7 1651 aa21.09■□□□□ 0.97
MKS1-207ENST00000578789 C14orf93Q9H972 538 aaKnown RBP21.08■□□□□ 0.97
MKS1-207ENST00000578789 LRPPRCP42704 1394 aaKnown RBP21.08■□□□□ 0.96
MKS1-207ENST00000578789 C19orf44Q9H6X5 657 aa21.07■□□□□ 0.96
MKS1-207ENST00000578789 C14orf37Q86TY3 774 aa21.06■□□□□ 0.96
MKS1-207ENST00000578789 ADGRB1O14514 1584 aa21.06■□□□□ 0.96
MKS1-207ENST00000578789 YTHDC2Q9H6S0 1430 aaKnown RBP21.05■□□□□ 0.96
MKS1-207ENST00000578789 DCAF11Q8TEB1 546 aa21.05■□□□□ 0.96
MKS1-207ENST00000578789 ABCC11Q96J66 1382 aa21.05■□□□□ 0.96
MKS1-207ENST00000578789 CADPS2Q86UW7 1296 aa21.04■□□□□ 0.96
MKS1-207ENST00000578789 HSPA1LP34931 641 aa21.03■□□□□ 0.96
MKS1-207ENST00000578789 CFAP70Q5T0N1 1121 aa21.03■□□□□ 0.96
MKS1-207ENST00000578789 KIAA1210Q9ULL0 1709 aa21.02■□□□□ 0.96
MKS1-207ENST00000578789 DLC1Q96QB1 1528 aa21.01■□□□□ 0.95
MKS1-207ENST00000578789 TMEM132EQ6IEE7 984 aa21.01■□□□□ 0.95
MKS1-207ENST00000578789 SLAIN2Q9P270 581 aa21.01■□□□□ 0.95
MKS1-207ENST00000578789 ATF3P18847 181 aa21■□□□□ 0.95
MKS1-207ENST00000578789 KDM2AQ9Y2K7 1162 aa21■□□□□ 0.95
MKS1-207ENST00000578789 MST1RQ04912 1400 aa21■□□□□ 0.95
MKS1-207ENST00000578789 CDC42BPGQ6DT37 1551 aa21■□□□□ 0.95
MKS1-207ENST00000578789 SIRT1Q96EB6 747 aa20.97■□□□□ 0.95
MKS1-207ENST00000578789 SIN3AQ96ST3 1273 aa20.97■□□□□ 0.95
MKS1-207ENST00000578789 STK26Q9P289 416 aa20.97■□□□□ 0.95
MKS1-207ENST00000578789 AHDC1Q5TGY3 1603 aaPredicted RBP20.96■□□□□ 0.95
MKS1-207ENST00000578789 PLEKHH1Q9ULM0 1364 aa20.95■□□□□ 0.94
MKS1-207ENST00000578789 PHLPP1O60346 1717 aa20.95■□□□□ 0.94
MKS1-207ENST00000578789 WAPLQ7Z5K2 1190 aa20.92■□□□□ 0.94
MKS1-207ENST00000578789 C1orf167Q5SNV9 1468 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms