RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ILDR1Q86SU0 546 aaPredicted RBP28.98■■■□□ 2.23
SS18-209ENST00000578595 FOXD1Q16676 465 aa28.94■■■□□ 2.22
SS18-209ENST00000578595 ZNF326Q5BKZ1 582 aaKnown RBP28.94■■■□□ 2.22
SS18-209ENST00000578595 FBXO41Q8TF61 875 aa28.94■■■□□ 2.22
SS18-209ENST00000578595 STRCP1A6NGW2 1772 aa28.93■■■□□ 2.22
SS18-209ENST00000578595 HDGFP51858 240 aaKnown RBP28.92■■■□□ 2.22
SS18-209ENST00000578595 ZFYVE9O95405 1425 aa28.92■■■□□ 2.22
SS18-209ENST00000578595 ACIN1Q9UKV3 1341 aaKnown RBP28.92■■■□□ 2.22
SS18-209ENST00000578595 CPS1P31327 1500 aa28.91■■■□□ 2.22
SS18-209ENST00000578595 NUTM2DQ5VT03 806 aaPredicted RBP28.91■■■□□ 2.22
SS18-209ENST00000578595 MPHOSPH9Q99550 1183 aa28.91■■■□□ 2.22
SS18-209ENST00000578595 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.88■■■□□ 2.21
SS18-209ENST00000578595 SLC26A8Q96RN1 970 aa28.87■■■□□ 2.21
SS18-209ENST00000578595 IQSEC2Q5JU85 1478 aa28.85■■■□□ 2.21
SS18-209ENST00000578595 PLEKHG1Q9ULL1 1385 aa28.84■■■□□ 2.21
SS18-209ENST00000578595 CCDC144AA2RUR9 1427 aa28.82■■■□□ 2.2
SS18-209ENST00000578595 NEXMIFQ5QGS0 1516 aa28.79■■■□□ 2.2
SS18-209ENST00000578595 PPLO60437 1756 aa28.77■■■□□ 2.2
SS18-209ENST00000578595 CHD2O14647 1828 aaKnown RBP28.76■■■□□ 2.19
SS18-209ENST00000578595 DIP2AQ14689 1571 aa28.75■■■□□ 2.19
SS18-209ENST00000578595 LRRC7Q96NW7 1537 aa28.74■■■□□ 2.19
SS18-209ENST00000578595 UBAP1LF5GYI3 381 aa28.73■■■□□ 2.19
SS18-209ENST00000578595 XIRP1Q702N8 1843 aaKnown RBP28.73■■■□□ 2.19
SS18-209ENST00000578595 NWD1Q149M9 1564 aa28.71■■■□□ 2.19
SS18-209ENST00000578595 NRXN3Q9Y4C0 1643 aa28.7■■■□□ 2.19
SS18-209ENST00000578595 ADAMTS13Q76LX8 1427 aa28.69■■■□□ 2.18
SS18-209ENST00000578595 SCAF1Q9H7N4 1312 aaKnown RBP28.69■■■□□ 2.18
SS18-209ENST00000578595 SETBP1Q9Y6X0 1596 aa28.68■■■□□ 2.18
SS18-209ENST00000578595 KCNA6P17658 529 aa28.68■■■□□ 2.18
SS18-209ENST00000578595 HRCP23327 699 aa28.67■■■□□ 2.18
SS18-209ENST00000578595 RGL3Q3MIN7 710 aa28.67■■■□□ 2.18
SS18-209ENST00000578595 IFT172Q9UG01 1749 aa28.66■■■□□ 2.18
SS18-209ENST00000578595 NKTRP30414 1462 aaKnown RBP28.66■■■□□ 2.18
SS18-209ENST00000578595 TBX22Q9Y458 520 aa28.65■■■□□ 2.18
SS18-209ENST00000578595 PROSER2Q86WR7 435 aaPredicted RBP28.64■■■□□ 2.18
SS18-209ENST00000578595 RPGRIP1LQ68CZ1 1315 aa28.63■■■□□ 2.17
SS18-209ENST00000578595 VGFO15240 615 aaPredicted RBP28.62■■■□□ 2.17
SS18-209ENST00000578595 TOM1O60784 492 aa28.6■■■□□ 2.17
SS18-209ENST00000578595 PIP4K2BP78356 416 aa28.6■■■□□ 2.17
SS18-209ENST00000578595 RBM33Q96EV2 1170 aaKnown RBP28.6■■■□□ 2.17
SS18-209ENST00000578595 TMEM94Q12767 1356 aa28.6■■■□□ 2.17
SS18-209ENST00000578595 SPATA31E1Q6ZUB1 1445 aa28.6■■■□□ 2.17
SS18-209ENST00000578595 PIK3R4Q99570 1358 aa28.57■■■□□ 2.16
SS18-209ENST00000578595 SETD1AO15047 1707 aaKnown RBP28.56■■■□□ 2.16
SS18-209ENST00000578595 ANKRD30BQ9BXX2 1392 aa28.55■■■□□ 2.16
SS18-209ENST00000578595 C14orf37Q86TY3 774 aa28.55■■■□□ 2.16
SS18-209ENST00000578595 XRN1Q8IZH2 1706 aaKnown RBP28.55■■■□□ 2.16
SS18-209ENST00000578595 TRIM26Q12899 539 aaPredicted RBP28.53■■■□□ 2.16
SS18-209ENST00000578595 ALKQ9UM73 1620 aa28.53■■■□□ 2.16
SS18-209ENST00000578595 AMOTL2Q9Y2J4 779 aa28.52■■■□□ 2.16
SS18-209ENST00000578595 PTPRUQ92729 1446 aa28.52■■■□□ 2.16
SS18-209ENST00000578595 METP08581 1390 aa28.51■■■□□ 2.16
SS18-209ENST00000578595 MSH6P52701 1360 aa28.5■■■□□ 2.15
SS18-209ENST00000578595 ADGRF5Q8IZF2 1346 aa28.48■■■□□ 2.15
SS18-209ENST00000578595 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.43■■■□□ 2.14
SS18-209ENST00000578595 MYOM2P54296 1465 aa28.41■■■□□ 2.14
SS18-209ENST00000578595 LAMC1P11047 1609 aa28.41■■■□□ 2.14
SS18-209ENST00000578595 PIK3C2GO75747 1445 aa28.4■■■□□ 2.14
SS18-209ENST00000578595 NALCNQ8IZF0 1738 aa28.38■■■□□ 2.13
SS18-209ENST00000578595 KDM2AQ9Y2K7 1162 aa28.37■■■□□ 2.13
SS18-209ENST00000578595 ROBO1Q9Y6N7 1651 aa28.37■■■□□ 2.13
SS18-209ENST00000578595 NCOA3Q9Y6Q9 1424 aa28.36■■■□□ 2.13
SS18-209ENST00000578595 DCAF11Q8TEB1 546 aa28.36■■■□□ 2.13
SS18-209ENST00000578595 KNDC1Q76NI1 1749 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 ATF3P18847 181 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 HSPA1LP34931 641 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 STK26Q9P289 416 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 PTCH1Q13635 1447 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 ASXL1Q8IXJ9 1541 aa28.33■■■□□ 2.13
SS18-209ENST00000578595 C19orf44Q9H6X5 657 aa28.31■■■□□ 2.12
SS18-209ENST00000578595 NRXN1Q9ULB1 1477 aa28.31■■■□□ 2.12
SS18-209ENST00000578595 TMEM132EQ6IEE7 984 aa28.3■■■□□ 2.12
SS18-209ENST00000578595 ROBO2Q9HCK4 1378 aa28.29■■■□□ 2.12
SS18-209ENST00000578595 CADPS2Q86UW7 1296 aa28.29■■■□□ 2.12
SS18-209ENST00000578595 ADGRL3Q9HAR2 1447 aa28.28■■■□□ 2.12
SS18-209ENST00000578595 CFAP70Q5T0N1 1121 aa28.28■■■□□ 2.12
SS18-209ENST00000578595 DHX57Q6P158 1386 aaKnown RBP28.26■■■□□ 2.12
SS18-209ENST00000578595 SLAIN2Q9P270 581 aa28.26■■■□□ 2.11
SS18-209ENST00000578595 DCCP43146 1447 aa28.25■■■□□ 2.11
SS18-209ENST00000578595 LRPPRCP42704 1394 aaKnown RBP28.24■■■□□ 2.11
SS18-209ENST00000578595 PHLPP1O60346 1717 aa28.24■■■□□ 2.11
SS18-209ENST00000578595 C14orf93Q9H972 538 aaKnown RBP28.24■■■□□ 2.11
SS18-209ENST00000578595 FAM135BQ49AJ0 1406 aa28.24■■■□□ 2.11
SS18-209ENST00000578595 YTHDC2Q9H6S0 1430 aaKnown RBP28.24■■■□□ 2.11
SS18-209ENST00000578595 NEUROD1Q13562 356 aa28.23■■■□□ 2.11
SS18-209ENST00000578595 PRAG1Q86YV5 1406 aa28.22■■■□□ 2.11
SS18-209ENST00000578595 SIN3AQ96ST3 1273 aa28.21■■■□□ 2.11
SS18-209ENST00000578595 TECPR2O15040 1411 aa28.19■■■□□ 2.1
SS18-209ENST00000578595 STAC3Q96MF2 364 aa28.19■■■□□ 2.1
SS18-209ENST00000578595 ABCC11Q96J66 1382 aa28.17■■■□□ 2.1
SS18-209ENST00000578595 WAPLQ7Z5K2 1190 aa28.16■■■□□ 2.1
SS18-209ENST00000578595 PCGF6Q9BYE7 350 aa28.15■■■□□ 2.1
SS18-209ENST00000578595 MST1RQ04912 1400 aa28.15■■■□□ 2.1
SS18-209ENST00000578595 ADGRB1O14514 1584 aa28.14■■■□□ 2.1
SS18-209ENST00000578595 KIAA1210Q9ULL0 1709 aa28.14■■■□□ 2.1
SS18-209ENST00000578595 PLEKHH1Q9ULM0 1364 aa28.13■■■□□ 2.09
SS18-209ENST00000578595 CDC42BPGQ6DT37 1551 aa28.13■■■□□ 2.09
SS18-209ENST00000578595 SAFB2Q14151 953 aaKnown RBP eCLIP28.11■■■□□ 2.09
SS18-209ENST00000578595 POGKQ9P215 609 aa28.1■■■□□ 2.09
SS18-209ENST00000578595 TRAK1Q9UPV9 953 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms