RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 FOXD1Q16676 465 aa28.71■■■□□ 2.19
SS18-208ENST00000577751 HDGFP51858 240 aaKnown RBP28.7■■■□□ 2.18
SS18-208ENST00000577751 KIF1BO60333 1816 aa28.69■■■□□ 2.18
SS18-208ENST00000577751 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.67■■■□□ 2.18
SS18-208ENST00000577751 PLEKHG1Q9ULL1 1385 aa28.64■■■□□ 2.18
SS18-208ENST00000577751 IQSEC2Q5JU85 1478 aa28.63■■■□□ 2.17
SS18-208ENST00000577751 CPS1P31327 1500 aa28.62■■■□□ 2.17
SS18-208ENST00000577751 STRCP1A6NGW2 1772 aa28.62■■■□□ 2.17
SS18-208ENST00000577751 FBXO41Q8TF61 875 aa28.61■■■□□ 2.17
SS18-208ENST00000577751 PPP1R15AO75807 674 aaPredicted RBP28.6■■■□□ 2.17
SS18-208ENST00000577751 NUTM2DQ5VT03 806 aaPredicted RBP28.59■■■□□ 2.17
SS18-208ENST00000577751 CCDC144AA2RUR9 1427 aa28.59■■■□□ 2.17
SS18-208ENST00000577751 ZNF326Q5BKZ1 582 aaKnown RBP28.58■■■□□ 2.17
SS18-208ENST00000577751 ILDR1Q86SU0 546 aaPredicted RBP28.58■■■□□ 2.17
SS18-208ENST00000577751 SLC26A8Q96RN1 970 aa28.58■■■□□ 2.17
SS18-208ENST00000577751 NEXMIFQ5QGS0 1516 aa28.58■■■□□ 2.17
SS18-208ENST00000577751 BCANQ96GW7 911 aa28.54■■■□□ 2.16
SS18-208ENST00000577751 ADAMTS13Q76LX8 1427 aa28.53■■■□□ 2.16
SS18-208ENST00000577751 TBX22Q9Y458 520 aa28.53■■■□□ 2.16
SS18-208ENST00000577751 RPGRIP1LQ68CZ1 1315 aa28.51■■■□□ 2.15
SS18-208ENST00000577751 SPATA31E1Q6ZUB1 1445 aa28.51■■■□□ 2.15
SS18-208ENST00000577751 DIP2AQ14689 1571 aa28.5■■■□□ 2.15
SS18-208ENST00000577751 SENP3Q9H4L4 574 aaPredicted RBP28.5■■■□□ 2.15
SS18-208ENST00000577751 ANKRD30BQ9BXX2 1392 aa28.5■■■□□ 2.15
SS18-208ENST00000577751 LRRC7Q96NW7 1537 aa28.49■■■□□ 2.15
SS18-208ENST00000577751 KCNA6P17658 529 aa28.49■■■□□ 2.15
SS18-208ENST00000577751 TRIM26Q12899 539 aaPredicted RBP28.49■■■□□ 2.15
SS18-208ENST00000577751 NRXN3Q9Y4C0 1643 aa28.49■■■□□ 2.15
SS18-208ENST00000577751 SETBP1Q9Y6X0 1596 aa28.49■■■□□ 2.15
SS18-208ENST00000577751 CHD2O14647 1828 aaKnown RBP28.48■■■□□ 2.15
SS18-208ENST00000577751 PPLO60437 1756 aa28.48■■■□□ 2.15
SS18-208ENST00000577751 NWD1Q149M9 1564 aa28.47■■■□□ 2.15
SS18-208ENST00000577751 VGFO15240 615 aaPredicted RBP28.45■■■□□ 2.14
SS18-208ENST00000577751 PIK3R4Q99570 1358 aa28.44■■■□□ 2.14
SS18-208ENST00000577751 IFT172Q9UG01 1749 aa28.42■■■□□ 2.14
SS18-208ENST00000577751 XIRP1Q702N8 1843 aaKnown RBP28.41■■■□□ 2.14
SS18-208ENST00000577751 RGL3Q3MIN7 710 aa28.41■■■□□ 2.14
SS18-208ENST00000577751 NKTRP30414 1462 aaKnown RBP28.4■■■□□ 2.14
SS18-208ENST00000577751 SETD1AO15047 1707 aaKnown RBP28.35■■■□□ 2.13
SS18-208ENST00000577751 PTPRUQ92729 1446 aa28.35■■■□□ 2.13
SS18-208ENST00000577751 UBAP1LF5GYI3 381 aa28.34■■■□□ 2.13
SS18-208ENST00000577751 PROSER2Q86WR7 435 aaPredicted RBP28.33■■■□□ 2.13
SS18-208ENST00000577751 METP08581 1390 aa28.33■■■□□ 2.13
SS18-208ENST00000577751 TMEM94Q12767 1356 aa28.33■■■□□ 2.13
SS18-208ENST00000577751 ADGRF5Q8IZF2 1346 aa28.32■■■□□ 2.12
SS18-208ENST00000577751 ALKQ9UM73 1620 aa28.32■■■□□ 2.12
SS18-208ENST00000577751 AMOTL2Q9Y2J4 779 aa28.31■■■□□ 2.12
SS18-208ENST00000577751 XRN1Q8IZH2 1706 aaKnown RBP28.29■■■□□ 2.12
SS18-208ENST00000577751 TOM1O60784 492 aa28.29■■■□□ 2.12
SS18-208ENST00000577751 RBM33Q96EV2 1170 aaKnown RBP28.26■■■□□ 2.11
SS18-208ENST00000577751 MYOM2P54296 1465 aa28.26■■■□□ 2.11
SS18-208ENST00000577751 NCOA3Q9Y6Q9 1424 aa28.26■■■□□ 2.11
SS18-208ENST00000577751 NRXN1Q9ULB1 1477 aa28.25■■■□□ 2.11
SS18-208ENST00000577751 PIK3C2GO75747 1445 aa28.25■■■□□ 2.11
SS18-208ENST00000577751 DHX57Q6P158 1386 aaKnown RBP28.21■■■□□ 2.11
SS18-208ENST00000577751 PRAG1Q86YV5 1406 aa28.18■■■□□ 2.1
SS18-208ENST00000577751 MSH6P52701 1360 aa28.17■■■□□ 2.1
SS18-208ENST00000577751 STAC3Q96MF2 364 aa28.17■■■□□ 2.1
SS18-208ENST00000577751 C14orf93Q9H972 538 aaKnown RBP28.16■■■□□ 2.1
SS18-208ENST00000577751 PIP4K2BP78356 416 aa28.15■■■□□ 2.1
SS18-208ENST00000577751 DCAF11Q8TEB1 546 aa28.15■■■□□ 2.1
SS18-208ENST00000577751 LAMC1P11047 1609 aa28.14■■■□□ 2.1
SS18-208ENST00000577751 ASXL1Q8IXJ9 1541 aa28.14■■■□□ 2.1
SS18-208ENST00000577751 PTCH1Q13635 1447 aa28.14■■■□□ 2.1
SS18-208ENST00000577751 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.12■■■□□ 2.09
SS18-208ENST00000577751 C19orf44Q9H6X5 657 aa28.12■■■□□ 2.09
SS18-208ENST00000577751 KDM2AQ9Y2K7 1162 aa28.11■■■□□ 2.09
SS18-208ENST00000577751 SCAF1Q9H7N4 1312 aaKnown RBP28.11■■■□□ 2.09
SS18-208ENST00000577751 ROBO2Q9HCK4 1378 aa28.11■■■□□ 2.09
SS18-208ENST00000577751 CFAP70Q5T0N1 1121 aa28.1■■■□□ 2.09
SS18-208ENST00000577751 TMEM132EQ6IEE7 984 aa28.09■■■□□ 2.09
SS18-208ENST00000577751 LRPPRCP42704 1394 aaKnown RBP28.09■■■□□ 2.09
SS18-208ENST00000577751 C14orf37Q86TY3 774 aa28.08■■■□□ 2.09
SS18-208ENST00000577751 TECPR2O15040 1411 aa28.08■■■□□ 2.09
SS18-208ENST00000577751 SIN3AQ96ST3 1273 aa28.07■■■□□ 2.08
SS18-208ENST00000577751 ABCC11Q96J66 1382 aa28.07■■■□□ 2.08
SS18-208ENST00000577751 KNDC1Q76NI1 1749 aa28.06■■■□□ 2.08
SS18-208ENST00000577751 FAM135BQ49AJ0 1406 aa28.06■■■□□ 2.08
SS18-208ENST00000577751 DCCP43146 1447 aa28.05■■■□□ 2.08
SS18-208ENST00000577751 YTHDC2Q9H6S0 1430 aaKnown RBP28.05■■■□□ 2.08
SS18-208ENST00000577751 NALCNQ8IZF0 1738 aa28.04■■■□□ 2.08
SS18-208ENST00000577751 ADGRL3Q9HAR2 1447 aa28.04■■■□□ 2.08
SS18-208ENST00000577751 CADPS2Q86UW7 1296 aa28.04■■■□□ 2.08
SS18-208ENST00000577751 SLAIN2Q9P270 581 aa28.04■■■□□ 2.08
SS18-208ENST00000577751 STK26Q9P289 416 aa28.02■■■□□ 2.08
SS18-208ENST00000577751 ATF3P18847 181 aa28.01■■■□□ 2.07
SS18-208ENST00000577751 HSPA1LP34931 641 aa28.01■■■□□ 2.07
SS18-208ENST00000577751 ADGRB1O14514 1584 aa28.01■■■□□ 2.07
SS18-208ENST00000577751 SIRT1Q96EB6 747 aa28■■■□□ 2.07
SS18-208ENST00000577751 PCGF6Q9BYE7 350 aa28■■■□□ 2.07
SS18-208ENST00000577751 ROBO1Q9Y6N7 1651 aa28■■■□□ 2.07
SS18-208ENST00000577751 NEUROD1Q13562 356 aa27.98■■■□□ 2.07
SS18-208ENST00000577751 L3MBTL2Q969R5 705 aa27.97■■■□□ 2.07
SS18-208ENST00000577751 KIAA1210Q9ULL0 1709 aa27.95■■■□□ 2.07
SS18-208ENST00000577751 WAPLQ7Z5K2 1190 aa27.95■■■□□ 2.06
SS18-208ENST00000577751 MST1RQ04912 1400 aa27.93■■■□□ 2.06
SS18-208ENST00000577751 DLC1Q96QB1 1528 aa27.92■■■□□ 2.06
SS18-208ENST00000577751 PLEKHH1Q9ULM0 1364 aa27.92■■■□□ 2.06
SS18-208ENST00000577751 CDC42BPGQ6DT37 1551 aa27.88■■■□□ 2.05
SS18-208ENST00000577751 BRINP3Q76B58 766 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms