RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 UBAP1LF5GYI3 381 aa30.08■■■□□ 2.41
NUP88-204ENST00000572290 PLEKHG1Q9ULL1 1385 aa30.07■■■□□ 2.4
NUP88-204ENST00000572290 SETD5Q9C0A6 1442 aa30.05■■■□□ 2.4
NUP88-204ENST00000572290 SPHKAPQ2M3C7 1700 aa30.05■■■□□ 2.4
NUP88-204ENST00000572290 TRPM2O94759 1503 aa30.05■■■□□ 2.4
NUP88-204ENST00000572290 NUTM2DQ5VT03 806 aaPredicted RBP30.04■■■□□ 2.4
NUP88-204ENST00000572290 SENP3Q9H4L4 574 aaPredicted RBP30.04■■■□□ 2.4
NUP88-204ENST00000572290 ACIN1Q9UKV3 1341 aaKnown RBP30.03■■■□□ 2.4
NUP88-204ENST00000572290 LRRC7Q96NW7 1537 aa30.01■■■□□ 2.4
NUP88-204ENST00000572290 ZNF326Q5BKZ1 582 aaKnown RBP30.01■■■□□ 2.39
NUP88-204ENST00000572290 KCNA6P17658 529 aa30■■■□□ 2.39
NUP88-204ENST00000572290 MPHOSPH9Q99550 1183 aa30■■■□□ 2.39
NUP88-204ENST00000572290 MYO5BQ9ULV0 1848 aa29.99■■■□□ 2.39
NUP88-204ENST00000572290 CLTCL1P53675 1640 aa29.97■■■□□ 2.39
NUP88-204ENST00000572290 TOM1O60784 492 aa29.97■■■□□ 2.39
NUP88-204ENST00000572290 FOXD1Q16676 465 aa29.97■■■□□ 2.39
NUP88-204ENST00000572290 STRCP1A6NGW2 1772 aa29.97■■■□□ 2.39
NUP88-204ENST00000572290 TBX22Q9Y458 520 aa29.96■■■□□ 2.39
NUP88-204ENST00000572290 RAB3GAP2Q9H2M9 1393 aa29.94■■■□□ 2.38
NUP88-204ENST00000572290 ADAMTS13Q76LX8 1427 aa29.91■■■□□ 2.38
NUP88-204ENST00000572290 PROSER2Q86WR7 435 aaPredicted RBP29.89■■■□□ 2.38
NUP88-204ENST00000572290 PIP4K2BP78356 416 aa29.88■■■□□ 2.37
NUP88-204ENST00000572290 SCAF1Q9H7N4 1312 aaKnown RBP29.88■■■□□ 2.37
NUP88-204ENST00000572290 TMEM94Q12767 1356 aa29.87■■■□□ 2.37
NUP88-204ENST00000572290 NKTRP30414 1462 aaKnown RBP29.85■■■□□ 2.37
NUP88-204ENST00000572290 NWD1Q149M9 1564 aa29.85■■■□□ 2.37
NUP88-204ENST00000572290 PIK3R4Q99570 1358 aa29.84■■■□□ 2.37
NUP88-204ENST00000572290 CCDC144AA2RUR9 1427 aa29.84■■■□□ 2.37
NUP88-204ENST00000572290 DIP2AQ14689 1571 aa29.84■■■□□ 2.37
NUP88-204ENST00000572290 NEXMIFQ5QGS0 1516 aa29.83■■■□□ 2.37
NUP88-204ENST00000572290 RPGRIP1LQ68CZ1 1315 aa29.82■■■□□ 2.36
NUP88-204ENST00000572290 RBM33Q96EV2 1170 aaKnown RBP29.81■■■□□ 2.36
NUP88-204ENST00000572290 VGFO15240 615 aaPredicted RBP29.8■■■□□ 2.36
NUP88-204ENST00000572290 HRCP23327 699 aa29.8■■■□□ 2.36
NUP88-204ENST00000572290 ALKQ9UM73 1620 aa29.78■■■□□ 2.36
NUP88-204ENST00000572290 KIF1BO60333 1816 aa29.78■■■□□ 2.36
NUP88-204ENST00000572290 SETBP1Q9Y6X0 1596 aa29.78■■■□□ 2.36
NUP88-204ENST00000572290 AMOTL2Q9Y2J4 779 aa29.75■■■□□ 2.35
NUP88-204ENST00000572290 RGL3Q3MIN7 710 aa29.73■■■□□ 2.35
NUP88-204ENST00000572290 NRXN3Q9Y4C0 1643 aa29.73■■■□□ 2.35
NUP88-204ENST00000572290 PTPRUQ92729 1446 aa29.72■■■□□ 2.35
NUP88-204ENST00000572290 SPATA31E1Q6ZUB1 1445 aa29.71■■■□□ 2.35
NUP88-204ENST00000572290 CHD2O14647 1828 aaKnown RBP29.71■■■□□ 2.35
NUP88-204ENST00000572290 HSPA1LP34931 641 aa29.71■■■□□ 2.35
NUP88-204ENST00000572290 METP08581 1390 aa29.71■■■□□ 2.35
NUP88-204ENST00000572290 MSH6P52701 1360 aa29.7■■■□□ 2.35
NUP88-204ENST00000572290 XIRP1Q702N8 1843 aaKnown RBP29.69■■■□□ 2.34
NUP88-204ENST00000572290 NCOA3Q9Y6Q9 1424 aa29.69■■■□□ 2.34
NUP88-204ENST00000572290 C14orf37Q86TY3 774 aa29.66■■■□□ 2.34
NUP88-204ENST00000572290 ANKRD30BQ9BXX2 1392 aa29.64■■■□□ 2.33
NUP88-204ENST00000572290 ADGRF5Q8IZF2 1346 aa29.63■■■□□ 2.33
NUP88-204ENST00000572290 FAM135BQ49AJ0 1406 aa29.61■■■□□ 2.33
NUP88-204ENST00000572290 C19orf44Q9H6X5 657 aa29.6■■■□□ 2.33
NUP88-204ENST00000572290 PPLO60437 1756 aa29.59■■■□□ 2.33
NUP88-204ENST00000572290 XRN1Q8IZH2 1706 aaKnown RBP29.58■■■□□ 2.33
NUP88-204ENST00000572290 SLAIN2Q9P270 581 aa29.57■■■□□ 2.32
NUP88-204ENST00000572290 CADPS2Q86UW7 1296 aa29.55■■■□□ 2.32
NUP88-204ENST00000572290 ATF3P18847 181 aa29.54■■■□□ 2.32
NUP88-204ENST00000572290 PIK3C2GO75747 1445 aa29.49■■■□□ 2.31
NUP88-204ENST00000572290 PTCH1Q13635 1447 aa29.49■■■□□ 2.31
NUP88-204ENST00000572290 DISP3Q9P2K9 1392 aa29.49■■■□□ 2.31
NUP88-204ENST00000572290 SETD1AO15047 1707 aaKnown RBP29.48■■■□□ 2.31
NUP88-204ENST00000572290 ROBO2Q9HCK4 1378 aa29.47■■■□□ 2.31
NUP88-204ENST00000572290 DCCP43146 1447 aa29.46■■■□□ 2.31
NUP88-204ENST00000572290 PRAG1Q86YV5 1406 aa29.46■■■□□ 2.31
NUP88-204ENST00000572290 IFT172Q9UG01 1749 aa29.46■■■□□ 2.31
NUP88-204ENST00000572290 MYOM2P54296 1465 aa29.45■■■□□ 2.31
NUP88-204ENST00000572290 ADGRL3Q9HAR2 1447 aa29.45■■■□□ 2.3
NUP88-204ENST00000572290 ROBO1Q9Y6N7 1651 aa29.44■■■□□ 2.3
NUP88-204ENST00000572290 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.44■■■□□ 2.3
NUP88-204ENST00000572290 NRXN1Q9ULB1 1477 aa29.42■■■□□ 2.3
NUP88-204ENST00000572290 TMEM132EQ6IEE7 984 aa29.42■■■□□ 2.3
NUP88-204ENST00000572290 C14orf93Q9H972 538 aaKnown RBP29.42■■■□□ 2.3
NUP88-204ENST00000572290 STK26Q9P289 416 aa29.41■■■□□ 2.3
NUP88-204ENST00000572290 LRPPRCP42704 1394 aaKnown RBP29.4■■■□□ 2.3
NUP88-204ENST00000572290 CFAP70Q5T0N1 1121 aa29.39■■■□□ 2.3
NUP88-204ENST00000572290 DCAF11Q8TEB1 546 aa29.38■■■□□ 2.29
NUP88-204ENST00000572290 STAC3Q96MF2 364 aa29.37■■■□□ 2.29
NUP88-204ENST00000572290 KDM2AQ9Y2K7 1162 aa29.37■■■□□ 2.29
NUP88-204ENST00000572290 ABCC11Q96J66 1382 aa29.37■■■□□ 2.29
NUP88-204ENST00000572290 ASXL1Q8IXJ9 1541 aa29.36■■■□□ 2.29
NUP88-204ENST00000572290 TECPR2O15040 1411 aa29.36■■■□□ 2.29
NUP88-204ENST00000572290 MST1RQ04912 1400 aa29.36■■■□□ 2.29
NUP88-204ENST00000572290 BRINP3Q76B58 766 aa29.35■■■□□ 2.29
NUP88-204ENST00000572290 YTHDC2Q9H6S0 1430 aaKnown RBP29.34■■■□□ 2.29
NUP88-204ENST00000572290 DHX57Q6P158 1386 aaKnown RBP29.33■■■□□ 2.29
NUP88-204ENST00000572290 TRIM26Q12899 539 aaPredicted RBP29.32■■■□□ 2.28
NUP88-204ENST00000572290 WAPLQ7Z5K2 1190 aa29.31■■■□□ 2.28
NUP88-204ENST00000572290 MED1Q15648 1581 aaPredicted RBP29.3■■■□□ 2.28
NUP88-204ENST00000572290 NALCNQ8IZF0 1738 aa29.3■■■□□ 2.28
NUP88-204ENST00000572290 SIRT1Q96EB6 747 aa29.28■■■□□ 2.28
NUP88-204ENST00000572290 LAMC1P11047 1609 aa29.27■■■□□ 2.28
NUP88-204ENST00000572290 C1orf167Q5SNV9 1468 aa29.26■■■□□ 2.27
NUP88-204ENST00000572290 PLEKHH1Q9ULM0 1364 aa29.26■■■□□ 2.27
NUP88-204ENST00000572290 AHDC1Q5TGY3 1603 aaPredicted RBP29.24■■■□□ 2.27
NUP88-204ENST00000572290 PHLPP1O60346 1717 aa29.24■■■□□ 2.27
NUP88-204ENST00000572290 JCADQ9P266 1359 aa29.24■■■□□ 2.27
NUP88-204ENST00000572290 KNDC1Q76NI1 1749 aa29.21■■■□□ 2.27
NUP88-204ENST00000572290 PHF23Q9BUL5 403 aaPredicted RBP29.21■■■□□ 2.27
NUP88-204ENST00000572290 COL16A1Q07092 1604 aaPredicted RBP29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms