RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 XIRP1Q702N8 1843 aaKnown RBP19.55■□□□□ 0.72
CNOT1-220ENST00000569916 LRRC7Q96NW7 1537 aa19.55■□□□□ 0.72
CNOT1-220ENST00000569916 PLEKHG1Q9ULL1 1385 aa19.54■□□□□ 0.72
CNOT1-220ENST00000569916 NWD1Q149M9 1564 aa19.53■□□□□ 0.72
CNOT1-220ENST00000569916 SETD5Q9C0A6 1442 aa19.53■□□□□ 0.72
CNOT1-220ENST00000569916 SLC4A1APQ9BWU0 796 aaKnown RBP19.53■□□□□ 0.72
CNOT1-220ENST00000569916 CHD2O14647 1828 aaKnown RBP19.51■□□□□ 0.71
CNOT1-220ENST00000569916 DIP2AQ14689 1571 aa19.5■□□□□ 0.71
CNOT1-220ENST00000569916 PPP1R15AO75807 674 aaPredicted RBP19.5■□□□□ 0.71
CNOT1-220ENST00000569916 SLC26A8Q96RN1 970 aa19.5■□□□□ 0.71
CNOT1-220ENST00000569916 NEXMIFQ5QGS0 1516 aa19.5■□□□□ 0.71
CNOT1-220ENST00000569916 HDGFP51858 240 aaKnown RBP19.49■□□□□ 0.71
CNOT1-220ENST00000569916 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.49■□□□□ 0.71
CNOT1-220ENST00000569916 ALKQ9UM73 1620 aa19.49■□□□□ 0.71
CNOT1-220ENST00000569916 NRXN3Q9Y4C0 1643 aa19.49■□□□□ 0.71
CNOT1-220ENST00000569916 ADAMTS13Q76LX8 1427 aa19.48■□□□□ 0.71
CNOT1-220ENST00000569916 RAB3GAP2Q9H2M9 1393 aa19.47■□□□□ 0.71
CNOT1-220ENST00000569916 SETBP1Q9Y6X0 1596 aa19.46■□□□□ 0.71
CNOT1-220ENST00000569916 UBAP1LF5GYI3 381 aa19.46■□□□□ 0.71
CNOT1-220ENST00000569916 NUTM2DQ5VT03 806 aaPredicted RBP19.46■□□□□ 0.71
CNOT1-220ENST00000569916 NKTRP30414 1462 aaKnown RBP19.46■□□□□ 0.71
CNOT1-220ENST00000569916 FOXD1Q16676 465 aa19.45■□□□□ 0.7
CNOT1-220ENST00000569916 BCANQ96GW7 911 aa19.45■□□□□ 0.7
CNOT1-220ENST00000569916 SENP3Q9H4L4 574 aaPredicted RBP19.45■□□□□ 0.7
CNOT1-220ENST00000569916 PPLO60437 1756 aa19.44■□□□□ 0.7
CNOT1-220ENST00000569916 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
CNOT1-220ENST00000569916 ACIN1Q9UKV3 1341 aaKnown RBP19.44■□□□□ 0.7
CNOT1-220ENST00000569916 KCNA6P17658 529 aa19.43■□□□□ 0.7
CNOT1-220ENST00000569916 ZNF326Q5BKZ1 582 aaKnown RBP19.42■□□□□ 0.7
CNOT1-220ENST00000569916 TBX22Q9Y458 520 aa19.41■□□□□ 0.7
CNOT1-220ENST00000569916 IFT172Q9UG01 1749 aa19.4■□□□□ 0.7
CNOT1-220ENST00000569916 CCDC144AA2RUR9 1427 aa19.4■□□□□ 0.7
CNOT1-220ENST00000569916 SETD1AO15047 1707 aaKnown RBP19.39■□□□□ 0.69
CNOT1-220ENST00000569916 XRN1Q8IZH2 1706 aaKnown RBP19.39■□□□□ 0.69
CNOT1-220ENST00000569916 TOM1O60784 492 aa19.38■□□□□ 0.69
CNOT1-220ENST00000569916 TMEM94Q12767 1356 aa19.38■□□□□ 0.69
CNOT1-220ENST00000569916 PIK3R4Q99570 1358 aa19.38■□□□□ 0.69
CNOT1-220ENST00000569916 SPATA31E1Q6ZUB1 1445 aa19.36■□□□□ 0.69
CNOT1-220ENST00000569916 PTPRUQ92729 1446 aa19.35■□□□□ 0.69
CNOT1-220ENST00000569916 PIP4K2BP78356 416 aa19.34■□□□□ 0.69
CNOT1-220ENST00000569916 PROSER2Q86WR7 435 aaPredicted RBP19.34■□□□□ 0.69
CNOT1-220ENST00000569916 RPGRIP1LQ68CZ1 1315 aa19.32■□□□□ 0.68
CNOT1-220ENST00000569916 SCAF1Q9H7N4 1312 aaKnown RBP19.32■□□□□ 0.68
CNOT1-220ENST00000569916 RBM33Q96EV2 1170 aaKnown RBP19.32■□□□□ 0.68
CNOT1-220ENST00000569916 HRCP23327 699 aa19.31■□□□□ 0.68
CNOT1-220ENST00000569916 METP08581 1390 aa19.31■□□□□ 0.68
CNOT1-220ENST00000569916 VGFO15240 615 aaPredicted RBP19.29■□□□□ 0.68
CNOT1-220ENST00000569916 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.28■□□□□ 0.68
CNOT1-220ENST00000569916 NCOA3Q9Y6Q9 1424 aa19.28■□□□□ 0.68
CNOT1-220ENST00000569916 MSH6P52701 1360 aa19.28■□□□□ 0.68
CNOT1-220ENST00000569916 AMOTL2Q9Y2J4 779 aa19.27■□□□□ 0.68
CNOT1-220ENST00000569916 ROBO1Q9Y6N7 1651 aa19.27■□□□□ 0.67
CNOT1-220ENST00000569916 ANKRD30BQ9BXX2 1392 aa19.25■□□□□ 0.67
CNOT1-220ENST00000569916 HSPA1LP34931 641 aa19.25■□□□□ 0.67
CNOT1-220ENST00000569916 RGL3Q3MIN7 710 aa19.24■□□□□ 0.67
CNOT1-220ENST00000569916 NALCNQ8IZF0 1738 aa19.24■□□□□ 0.67
CNOT1-220ENST00000569916 ADGRF5Q8IZF2 1346 aa19.23■□□□□ 0.67
CNOT1-220ENST00000569916 FAM135BQ49AJ0 1406 aa19.22■□□□□ 0.67
CNOT1-220ENST00000569916 PRAG1Q86YV5 1406 aa19.22■□□□□ 0.67
CNOT1-220ENST00000569916 MYOM2P54296 1465 aa19.22■□□□□ 0.67
CNOT1-220ENST00000569916 ASXL1Q8IXJ9 1541 aa19.21■□□□□ 0.67
CNOT1-220ENST00000569916 PIK3C2GO75747 1445 aa19.21■□□□□ 0.67
CNOT1-220ENST00000569916 PTCH1Q13635 1447 aa19.2■□□□□ 0.66
CNOT1-220ENST00000569916 NRXN1Q9ULB1 1477 aa19.2■□□□□ 0.66
CNOT1-220ENST00000569916 LAMC1P11047 1609 aa19.19■□□□□ 0.66
CNOT1-220ENST00000569916 KNDC1Q76NI1 1749 aa19.19■□□□□ 0.66
CNOT1-220ENST00000569916 DCCP43146 1447 aa19.18■□□□□ 0.66
CNOT1-220ENST00000569916 C14orf37Q86TY3 774 aa19.18■□□□□ 0.66
CNOT1-220ENST00000569916 C19orf44Q9H6X5 657 aa19.17■□□□□ 0.66
CNOT1-220ENST00000569916 ADGRL3Q9HAR2 1447 aa19.17■□□□□ 0.66
CNOT1-220ENST00000569916 SLAIN2Q9P270 581 aa19.15■□□□□ 0.66
CNOT1-220ENST00000569916 ROBO2Q9HCK4 1378 aa19.15■□□□□ 0.66
CNOT1-220ENST00000569916 MED1Q15648 1581 aaPredicted RBP19.15■□□□□ 0.66
CNOT1-220ENST00000569916 PHLPP1O60346 1717 aa19.14■□□□□ 0.66
CNOT1-220ENST00000569916 CADPS2Q86UW7 1296 aa19.13■□□□□ 0.65
CNOT1-220ENST00000569916 TECPR2O15040 1411 aa19.12■□□□□ 0.65
CNOT1-220ENST00000569916 MST1RQ04912 1400 aa19.11■□□□□ 0.65
CNOT1-220ENST00000569916 ATF3P18847 181 aa19.11■□□□□ 0.65
CNOT1-220ENST00000569916 COL16A1Q07092 1604 aaPredicted RBP19.11■□□□□ 0.65
CNOT1-220ENST00000569916 DISP3Q9P2K9 1392 aa19.1■□□□□ 0.65
CNOT1-220ENST00000569916 AHDC1Q5TGY3 1603 aaPredicted RBP19.1■□□□□ 0.65
CNOT1-220ENST00000569916 LRPPRCP42704 1394 aaKnown RBP19.09■□□□□ 0.65
CNOT1-220ENST00000569916 NHSL1Q5SYE7 1610 aa19.08■□□□□ 0.65
CNOT1-220ENST00000569916 YTHDC2Q9H6S0 1430 aaKnown RBP19.08■□□□□ 0.64
CNOT1-220ENST00000569916 DHX57Q6P158 1386 aaKnown RBP19.07■□□□□ 0.64
CNOT1-220ENST00000569916 CDC42BPGQ6DT37 1551 aa19.07■□□□□ 0.64
CNOT1-220ENST00000569916 TMEM132EQ6IEE7 984 aa19.07■□□□□ 0.64
CNOT1-220ENST00000569916 C14orf93Q9H972 538 aaKnown RBP19.07■□□□□ 0.64
CNOT1-220ENST00000569916 ABCC11Q96J66 1382 aa19.06■□□□□ 0.64
CNOT1-220ENST00000569916 ADGRB1O14514 1584 aa19.06■□□□□ 0.64
CNOT1-220ENST00000569916 CFAP70Q5T0N1 1121 aa19.05■□□□□ 0.64
CNOT1-220ENST00000569916 DCAF11Q8TEB1 546 aa19.04■□□□□ 0.64
CNOT1-220ENST00000569916 BRINP3Q76B58 766 aa19.03■□□□□ 0.64
CNOT1-220ENST00000569916 STK26Q9P289 416 aa19.03■□□□□ 0.64
CNOT1-220ENST00000569916 PLEKHH1Q9ULM0 1364 aa19.02■□□□□ 0.64
CNOT1-220ENST00000569916 C1orf167Q5SNV9 1468 aa19.02■□□□□ 0.63
CNOT1-220ENST00000569916 DLC1Q96QB1 1528 aa19.01■□□□□ 0.63
CNOT1-220ENST00000569916 STAC3Q96MF2 364 aa19.01■□□□□ 0.63
CNOT1-220ENST00000569916 KDM2AQ9Y2K7 1162 aa19.01■□□□□ 0.63
CNOT1-220ENST00000569916 SHPRHQ149N8 1683 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms