RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 EID1Q9Y6B2 187 aa11.92□□□□□ -0.5
CDH3-209ENST00000569080 PLEKHG1Q9ULL1 1385 aa11.92□□□□□ -0.5
CDH3-209ENST00000569080 STAG3Q9UJ98 1225 aa11.91□□□□□ -0.5
CDH3-209ENST00000569080 NKTRP30414 1462 aaKnown RBP11.9□□□□□ -0.5
CDH3-209ENST00000569080 NRXN3Q9Y4C0 1643 aa11.9□□□□□ -0.5
CDH3-209ENST00000569080 DIP2AQ14689 1571 aa11.9□□□□□ -0.5
CDH3-209ENST00000569080 ADAMTS13Q76LX8 1427 aa11.89□□□□□ -0.51
CDH3-209ENST00000569080 CHD2O14647 1828 aaKnown RBP11.89□□□□□ -0.51
CDH3-209ENST00000569080 SETBP1Q9Y6X0 1596 aa11.88□□□□□ -0.51
CDH3-209ENST00000569080 NEXMIFQ5QGS0 1516 aa11.87□□□□□ -0.51
CDH3-209ENST00000569080 SLC26A8Q96RN1 970 aa11.86□□□□□ -0.51
CDH3-209ENST00000569080 TMEM94Q12767 1356 aa11.85□□□□□ -0.51
CDH3-209ENST00000569080 KIF1BO60333 1816 aa11.85□□□□□ -0.51
CDH3-209ENST00000569080 XRN1Q8IZH2 1706 aaKnown RBP11.85□□□□□ -0.51
CDH3-209ENST00000569080 TOM1O60784 492 aa11.84□□□□□ -0.51
CDH3-209ENST00000569080 KCNA6P17658 529 aa11.84□□□□□ -0.51
CDH3-209ENST00000569080 SETD1AO15047 1707 aaKnown RBP11.83□□□□□ -0.52
CDH3-209ENST00000569080 CHGAP10645 457 aaKnown RBP11.82□□□□□ -0.52
CDH3-209ENST00000569080 PIP4K2BP78356 416 aa11.82□□□□□ -0.52
CDH3-209ENST00000569080 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.82□□□□□ -0.52
CDH3-209ENST00000569080 PIK3R4Q99570 1358 aa11.81□□□□□ -0.52
CDH3-209ENST00000569080 PTPRUQ92729 1446 aa11.81□□□□□ -0.52
CDH3-209ENST00000569080 PPP1R15AO75807 674 aaPredicted RBP11.81□□□□□ -0.52
CDH3-209ENST00000569080 HSPA1LP34931 641 aa11.81□□□□□ -0.52
CDH3-209ENST00000569080 NUTM2DQ5VT03 806 aaPredicted RBP11.81□□□□□ -0.52
CDH3-209ENST00000569080 TBX22Q9Y458 520 aa11.81□□□□□ -0.52
CDH3-209ENST00000569080 PPLO60437 1756 aa11.81□□□□□ -0.52
CDH3-209ENST00000569080 SENP3Q9H4L4 574 aaPredicted RBP11.8□□□□□ -0.52
CDH3-209ENST00000569080 ROBO1Q9Y6N7 1651 aa11.8□□□□□ -0.52
CDH3-209ENST00000569080 MED1Q15648 1581 aaPredicted RBP11.79□□□□□ -0.52
CDH3-209ENST00000569080 HDGFP51858 240 aaKnown RBP11.79□□□□□ -0.52
CDH3-209ENST00000569080 IFT172Q9UG01 1749 aa11.79□□□□□ -0.52
CDH3-209ENST00000569080 SCAF1Q9H7N4 1312 aaKnown RBP11.79□□□□□ -0.52
CDH3-209ENST00000569080 RBM33Q96EV2 1170 aaKnown RBP11.78□□□□□ -0.52
CDH3-209ENST00000569080 SLC4A1APQ9BWU0 796 aaKnown RBP11.78□□□□□ -0.52
CDH3-209ENST00000569080 DISP3Q9P2K9 1392 aa11.78□□□□□ -0.52
CDH3-209ENST00000569080 FAM135BQ49AJ0 1406 aa11.77□□□□□ -0.52
CDH3-209ENST00000569080 NCOA3Q9Y6Q9 1424 aa11.77□□□□□ -0.52
CDH3-209ENST00000569080 TRIM52Q96A61 297 aa11.77□□□□□ -0.53
CDH3-209ENST00000569080 METP08581 1390 aa11.77□□□□□ -0.53
CDH3-209ENST00000569080 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.77□□□□□ -0.53
CDH3-209ENST00000569080 SPATA31E1Q6ZUB1 1445 aa11.77□□□□□ -0.53
CDH3-209ENST00000569080 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
CDH3-209ENST00000569080 BCANQ96GW7 911 aa11.76□□□□□ -0.53
CDH3-209ENST00000569080 PRAG1Q86YV5 1406 aa11.76□□□□□ -0.53
CDH3-209ENST00000569080 SETD5Q9C0A6 1442 aa11.76□□□□□ -0.53
CDH3-209ENST00000569080 FOXD1Q16676 465 aa11.75□□□□□ -0.53
CDH3-209ENST00000569080 MSH6P52701 1360 aa11.75□□□□□ -0.53
CDH3-209ENST00000569080 NALCNQ8IZF0 1738 aa11.74□□□□□ -0.53
CDH3-209ENST00000569080 RAB3GAP2Q9H2M9 1393 aa11.74□□□□□ -0.53
CDH3-209ENST00000569080 CCDC144AA2RUR9 1427 aa11.73□□□□□ -0.53
CDH3-209ENST00000569080 DCCP43146 1447 aa11.73□□□□□ -0.53
CDH3-209ENST00000569080 ZNF326Q5BKZ1 582 aaKnown RBP11.73□□□□□ -0.53
CDH3-209ENST00000569080 MPHOSPH9Q99550 1183 aa11.73□□□□□ -0.53
CDH3-209ENST00000569080 COL16A1Q07092 1604 aaPredicted RBP11.72□□□□□ -0.53
CDH3-209ENST00000569080 ASXL1Q8IXJ9 1541 aa11.72□□□□□ -0.53
CDH3-209ENST00000569080 PTCH1Q13635 1447 aa11.72□□□□□ -0.53
CDH3-209ENST00000569080 ILDR2Q71H61 639 aa11.72□□□□□ -0.53
CDH3-209ENST00000569080 AMOTL2Q9Y2J4 779 aa11.71□□□□□ -0.53
CDH3-209ENST00000569080 PHLPP1O60346 1717 aa11.71□□□□□ -0.54
CDH3-209ENST00000569080 AHDC1Q5TGY3 1603 aaPredicted RBP11.71□□□□□ -0.54
CDH3-209ENST00000569080 RPGRIP1LQ68CZ1 1315 aa11.7□□□□□ -0.54
CDH3-209ENST00000569080 ADGRL3Q9HAR2 1447 aa11.69□□□□□ -0.54
CDH3-209ENST00000569080 PIK3C2GO75747 1445 aa11.69□□□□□ -0.54
CDH3-209ENST00000569080 ACIN1Q9UKV3 1341 aaKnown RBP11.68□□□□□ -0.54
CDH3-209ENST00000569080 SLAIN2Q9P270 581 aa11.68□□□□□ -0.54
CDH3-209ENST00000569080 KNDC1Q76NI1 1749 aa11.68□□□□□ -0.54
CDH3-209ENST00000569080 NRXN1Q9ULB1 1477 aa11.68□□□□□ -0.54
CDH3-209ENST00000569080 MST1RQ04912 1400 aa11.68□□□□□ -0.54
CDH3-209ENST00000569080 NHSL1Q5SYE7 1610 aa11.68□□□□□ -0.54
CDH3-209ENST00000569080 ROBO2Q9HCK4 1378 aa11.67□□□□□ -0.54
CDH3-209ENST00000569080 VGFO15240 615 aaPredicted RBP11.67□□□□□ -0.54
CDH3-209ENST00000569080 C19orf44Q9H6X5 657 aa11.67□□□□□ -0.54
CDH3-209ENST00000569080 MYOM2P54296 1465 aa11.67□□□□□ -0.54
CDH3-209ENST00000569080 ANKRD30BQ9BXX2 1392 aa11.67□□□□□ -0.54
CDH3-209ENST00000569080 ADGRF5Q8IZF2 1346 aa11.66□□□□□ -0.54
CDH3-209ENST00000569080 TECPR2O15040 1411 aa11.66□□□□□ -0.54
CDH3-209ENST00000569080 LAMC1P11047 1609 aa11.65□□□□□ -0.54
CDH3-209ENST00000569080 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
CDH3-209ENST00000569080 SHPRHQ149N8 1683 aa11.65□□□□□ -0.55
CDH3-209ENST00000569080 CDC42BPGQ6DT37 1551 aa11.64□□□□□ -0.55
CDH3-209ENST00000569080 C14orf37Q86TY3 774 aa11.63□□□□□ -0.55
CDH3-209ENST00000569080 LRP6O75581 1613 aa11.62□□□□□ -0.55
CDH3-209ENST00000569080 ATF3P18847 181 aa11.62□□□□□ -0.55
CDH3-209ENST00000569080 HRCP23327 699 aa11.62□□□□□ -0.55
CDH3-209ENST00000569080 BRINP3Q76B58 766 aa11.62□□□□□ -0.55
CDH3-209ENST00000569080 RGL3Q3MIN7 710 aa11.61□□□□□ -0.55
CDH3-209ENST00000569080 LRPPRCP42704 1394 aaKnown RBP11.61□□□□□ -0.55
CDH3-209ENST00000569080 JCADQ9P266 1359 aa11.61□□□□□ -0.55
CDH3-209ENST00000569080 C1orf167Q5SNV9 1468 aa11.61□□□□□ -0.55
CDH3-209ENST00000569080 ADGRB1O14514 1584 aa11.6□□□□□ -0.55
CDH3-209ENST00000569080 SOCS7O14512 581 aa11.59□□□□□ -0.55
CDH3-209ENST00000569080 RGS17Q9UGC6 210 aaPredicted RBP11.59□□□□□ -0.55
CDH3-209ENST00000569080 YTHDC2Q9H6S0 1430 aaKnown RBP11.59□□□□□ -0.55
CDH3-209ENST00000569080 ABCC11Q96J66 1382 aa11.58□□□□□ -0.56
CDH3-209ENST00000569080 FMN2Q9NZ56 1722 aa11.57□□□□□ -0.56
CDH3-209ENST00000569080 PLEKHH1Q9ULM0 1364 aa11.57□□□□□ -0.56
CDH3-209ENST00000569080 DLC1Q96QB1 1528 aa11.56□□□□□ -0.56
CDH3-209ENST00000569080 PHF23Q9BUL5 403 aaPredicted RBP11.56□□□□□ -0.56
CDH3-209ENST00000569080 DHX57Q6P158 1386 aaKnown RBP11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms