RNA–Protein interactions for RNA: ENST00000566818.1

IFT140-208, Transcript of intraflagellar transport 140, human

TSL 3

Gene IFT140, Length 722 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IFT140-208	ENST00000566818	PPP1R15A	O75807	674 aa	Predicted RBP	28.33	■■■□□ 2.13
IFT140-208	ENST00000566818	SCAF1	Q9H7N4	1312 aa	Known RBP	28.33	■■■□□ 2.13
IFT140-208	ENST00000566818	BCAN	Q96GW7	911 aa		28.32	■■■□□ 2.12
IFT140-208	ENST00000566818	PLEKHG1	Q9ULL1	1385 aa		28.31	■■■□□ 2.12
IFT140-208	ENST00000566818	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.3	■■■□□ 2.12
IFT140-208	ENST00000566818	PIP4K2B	P78356	416 aa		28.29	■■■□□ 2.12
IFT140-208	ENST00000566818	SLC26A8	Q96RN1	970 aa		28.29	■■■□□ 2.12
IFT140-208	ENST00000566818	NWD1	Q149M9	1564 aa		28.26	■■■□□ 2.11
IFT140-208	ENST00000566818	KCNA6	P17658	529 aa		28.25	■■■□□ 2.11
IFT140-208	ENST00000566818	NKTR	P30414	1462 aa	Known RBP	28.25	■■■□□ 2.11
IFT140-208	ENST00000566818	ALK	Q9UM73	1620 aa		28.24	■■■□□ 2.11
IFT140-208	ENST00000566818	TRPM2	O94759	1503 aa		28.23	■■■□□ 2.11
IFT140-208	ENST00000566818	DIP2A	Q14689	1571 aa		28.22	■■■□□ 2.11
IFT140-208	ENST00000566818	TRIM52	Q96A61	297 aa		28.22	■■■□□ 2.11
IFT140-208	ENST00000566818	XIRP1	Q702N8	1843 aa	Known RBP	28.22	■■■□□ 2.11
IFT140-208	ENST00000566818	TMEM94	Q12767	1356 aa		28.18	■■■□□ 2.1
IFT140-208	ENST00000566818	DISP3	Q9P2K9	1392 aa		28.18	■■■□□ 2.1
IFT140-208	ENST00000566818	CLTCL1	P53675	1640 aa		28.18	■■■□□ 2.1
IFT140-208	ENST00000566818	SENP3	Q9H4L4	574 aa	Predicted RBP	28.17	■■■□□ 2.1
IFT140-208	ENST00000566818	HSPA1L	P34931	641 aa		28.15	■■■□□ 2.1
IFT140-208	ENST00000566818	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.15	■■■□□ 2.1
IFT140-208	ENST00000566818	PROSER2	Q86WR7	435 aa	Predicted RBP	28.15	■■■□□ 2.1
IFT140-208	ENST00000566818	TBX22	Q9Y458	520 aa		28.15	■■■□□ 2.1
IFT140-208	ENST00000566818	CHD2	O14647	1828 aa	Known RBP	28.15	■■■□□ 2.1
IFT140-208	ENST00000566818	ADAMTS13	Q76LX8	1427 aa		28.13	■■■□□ 2.09
IFT140-208	ENST00000566818	ZNF326	Q5BKZ1	582 aa	Known RBP	28.13	■■■□□ 2.09
IFT140-208	ENST00000566818	SLC4A1AP	Q9BWU0	796 aa	Known RBP	28.13	■■■□□ 2.09
IFT140-208	ENST00000566818	KIF1B	O60333	1816 aa		28.12	■■■□□ 2.09
IFT140-208	ENST00000566818	PIK3R4	Q99570	1358 aa		28.11	■■■□□ 2.09
IFT140-208	ENST00000566818	SETBP1	Q9Y6X0	1596 aa		28.07	■■■□□ 2.08
IFT140-208	ENST00000566818	MSH6	P52701	1360 aa		28.07	■■■□□ 2.08
IFT140-208	ENST00000566818	NEXMIF	Q5QGS0	1516 aa		28.06	■■■□□ 2.08
IFT140-208	ENST00000566818	NRXN3	Q9Y4C0	1643 aa		28.04	■■■□□ 2.08
IFT140-208	ENST00000566818	ACIN1	Q9UKV3	1341 aa	Known RBP	28.03	■■■□□ 2.08
IFT140-208	ENST00000566818	NCOA3	Q9Y6Q9	1424 aa		28.02	■■■□□ 2.08
IFT140-208	ENST00000566818	RBM33	Q96EV2	1170 aa	Known RBP	28.02	■■■□□ 2.08
IFT140-208	ENST00000566818	FAM135B	Q49AJ0	1406 aa		28.01	■■■□□ 2.07
IFT140-208	ENST00000566818	MED1	Q15648	1581 aa	Predicted RBP	27.98	■■■□□ 2.07
IFT140-208	ENST00000566818	SETD5	Q9C0A6	1442 aa		27.96	■■■□□ 2.07
IFT140-208	ENST00000566818	C14orf37	Q86TY3	774 aa		27.96	■■■□□ 2.07
IFT140-208	ENST00000566818	ROBO1	Q9Y6N7	1651 aa		27.96	■■■□□ 2.07
IFT140-208	ENST00000566818	XRN1	Q8IZH2	1706 aa	Known RBP	27.95	■■■□□ 2.07
IFT140-208	ENST00000566818	CCDC144A	A2RUR9	1427 aa		27.94	■■■□□ 2.06
IFT140-208	ENST00000566818	PTPRU	Q92729	1446 aa		27.94	■■■□□ 2.06
IFT140-208	ENST00000566818	AMOTL2	Q9Y2J4	779 aa		27.94	■■■□□ 2.06
IFT140-208	ENST00000566818	RPGRIP1L	Q68CZ1	1315 aa		27.93	■■■□□ 2.06
IFT140-208	ENST00000566818	MPHOSPH9	Q99550	1183 aa		27.93	■■■□□ 2.06
IFT140-208	ENST00000566818	VGF	O15240	615 aa	Predicted RBP	27.92	■■■□□ 2.06
IFT140-208	ENST00000566818	FOXD1	Q16676	465 aa		27.92	■■■□□ 2.06
IFT140-208	ENST00000566818	PPL	O60437	1756 aa		27.89	■■■□□ 2.06
IFT140-208	ENST00000566818	MET	P08581	1390 aa		27.88	■■■□□ 2.05
IFT140-208	ENST00000566818	SLAIN2	Q9P270	581 aa		27.88	■■■□□ 2.05
IFT140-208	ENST00000566818	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	27.88	■■■□□ 2.05
IFT140-208	ENST00000566818	C19orf44	Q9H6X5	657 aa		27.87	■■■□□ 2.05
IFT140-208	ENST00000566818	CADPS2	Q86UW7	1296 aa		27.86	■■■□□ 2.05
IFT140-208	ENST00000566818	ATF3	P18847	181 aa		27.85	■■■□□ 2.05
IFT140-208	ENST00000566818	ILDR2	Q71H61	639 aa		27.85	■■■□□ 2.05
IFT140-208	ENST00000566818	RAB3GAP2	Q9H2M9	1393 aa		27.85	■■■□□ 2.05
IFT140-208	ENST00000566818	DCC	P43146	1447 aa		27.84	■■■□□ 2.05
IFT140-208	ENST00000566818	SETD1A	O15047	1707 aa	Known RBP	27.82	■■■□□ 2.04
IFT140-208	ENST00000566818	SPATA31E1	Q6ZUB1	1445 aa		27.81	■■■□□ 2.04
IFT140-208	ENST00000566818	PHLPP1	O60346	1717 aa		27.81	■■■□□ 2.04
IFT140-208	ENST00000566818	PHF23	Q9BUL5	403 aa	Predicted RBP	27.8	■■■□□ 2.04
IFT140-208	ENST00000566818	PTCH1	Q13635	1447 aa		27.78	■■■□□ 2.04
IFT140-208	ENST00000566818	ANKRD30B	Q9BXX2	1392 aa		27.77	■■■□□ 2.04
IFT140-208	ENST00000566818	IFT172	Q9UG01	1749 aa		27.77	■■■□□ 2.04
IFT140-208	ENST00000566818	ADGRL3	Q9HAR2	1447 aa		27.76	■■■□□ 2.04
IFT140-208	ENST00000566818	PRAG1	Q86YV5	1406 aa		27.75	■■■□□ 2.03
IFT140-208	ENST00000566818	RGL3	Q3MIN7	710 aa		27.74	■■■□□ 2.03
IFT140-208	ENST00000566818	NALCN	Q8IZF0	1738 aa		27.72	■■■□□ 2.03
IFT140-208	ENST00000566818	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.72	■■■□□ 2.03
IFT140-208	ENST00000566818	COL16A1	Q07092	1604 aa	Predicted RBP	27.7	■■■□□ 2.03
IFT140-208	ENST00000566818	ADGRF5	Q8IZF2	1346 aa		27.69	■■■□□ 2.02
IFT140-208	ENST00000566818	MST1R	Q04912	1400 aa		27.69	■■■□□ 2.02
IFT140-208	ENST00000566818	SOCS7	O14512	581 aa		27.69	■■■□□ 2.02
IFT140-208	ENST00000566818	JCAD	Q9P266	1359 aa		27.69	■■■□□ 2.02
IFT140-208	ENST00000566818	ROBO2	Q9HCK4	1378 aa		27.68	■■■□□ 2.02
IFT140-208	ENST00000566818	ASXL1	Q8IXJ9	1541 aa		27.67	■■■□□ 2.02
IFT140-208	ENST00000566818	PIK3C2G	O75747	1445 aa		27.66	■■■□□ 2.02
IFT140-208	ENST00000566818	HRC	P23327	699 aa		27.65	■■■□□ 2.02
IFT140-208	ENST00000566818	BRINP3	Q76B58	766 aa		27.65	■■■□□ 2.02
IFT140-208	ENST00000566818	MYOM2	P54296	1465 aa		27.63	■■■□□ 2.01
IFT140-208	ENST00000566818	LAMC1	P11047	1609 aa		27.6	■■■□□ 2.01
IFT140-208	ENST00000566818	TECPR2	O15040	1411 aa		27.59	■■■□□ 2.01
IFT140-208	ENST00000566818	KNDC1	Q76NI1	1749 aa		27.59	■■■□□ 2.01
IFT140-208	ENST00000566818	NHSL1	Q5SYE7	1610 aa		27.59	■■■□□ 2.01
IFT140-208	ENST00000566818	LRPPRC	P42704	1394 aa	Known RBP	27.59	■■■□□ 2.01
IFT140-208	ENST00000566818	SHPRH	Q149N8	1683 aa		27.59	■■■□□ 2.01
IFT140-208	ENST00000566818	NRXN1	Q9ULB1	1477 aa		27.58	■■■□□ 2.01
IFT140-208	ENST00000566818	C1orf167	Q5SNV9	1468 aa		27.57	■■■□□ 2
IFT140-208	ENST00000566818	CDC42BPG	Q6DT37	1551 aa		27.56	■■■□□ 2
IFT140-208	ENST00000566818	SPATA31A6	Q5VVP1	1343 aa		27.56	■■■□□ 2
IFT140-208	ENST00000566818	ABCC11	Q96J66	1382 aa		27.54	■■■□□ 2
IFT140-208	ENST00000566818	STK26	Q9P289	416 aa		27.54	■■■□□ 2
IFT140-208	ENST00000566818	YTHDC2	Q9H6S0	1430 aa	Known RBP	27.52	■■■□□ 2
IFT140-208	ENST00000566818	TMEM132E	Q6IEE7	984 aa		27.5	■■□□□ 1.99
IFT140-208	ENST00000566818	C14orf93	Q9H972	538 aa	Known RBP	27.5	■■□□□ 1.99
IFT140-208	ENST00000566818	RGS17	Q9UGC6	210 aa	Predicted RBP	27.48	■■□□□ 1.99
IFT140-208	ENST00000566818	DHX57	Q6P158	1386 aa	Known RBP	27.48	■■□□□ 1.99
IFT140-208	ENST00000566818	LRP6	O75581	1613 aa		27.47	■■□□□ 1.99

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms