RNA–Protein interactions for RNA: ENST00000566121.1

CMTM3-212, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-212ENST00000566121 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.28
CMTM3-212ENST00000566121 NKTRP30414 1462 aaKnown RBP23.06■■□□□ 1.28
CMTM3-212ENST00000566121 SLC26A8Q96RN1 970 aa23.06■■□□□ 1.28
CMTM3-212ENST00000566121 ITGAEP38570 1179 aa23.05■■□□□ 1.28
CMTM3-212ENST00000566121 PIK3R4Q99570 1358 aa23.04■■□□□ 1.28
CMTM3-212ENST00000566121 PPARGC1BQ86YN6 1023 aaKnown RBP23.04■■□□□ 1.28
CMTM3-212ENST00000566121 NAIPQ13075 1403 aa23.04■■□□□ 1.28
CMTM3-212ENST00000566121 NCOA3Q9Y6Q9 1424 aa23.04■■□□□ 1.28
CMTM3-212ENST00000566121 NWD1Q149M9 1564 aa23.04■■□□□ 1.28
CMTM3-212ENST00000566121 FAM135BQ49AJ0 1406 aa23.03■■□□□ 1.28
CMTM3-212ENST00000566121 TMEM94Q12767 1356 aa23.02■■□□□ 1.28
CMTM3-212ENST00000566121 SCAF1Q9H7N4 1312 aaKnown RBP23.02■■□□□ 1.28
CMTM3-212ENST00000566121 XIRP1Q702N8 1843 aaKnown RBP23.01■■□□□ 1.27
CMTM3-212ENST00000566121 PROSER2Q86WR7 435 aaPredicted RBP23■■□□□ 1.27
CMTM3-212ENST00000566121 PPP1R15AO75807 674 aaPredicted RBP22.99■■□□□ 1.27
CMTM3-212ENST00000566121 ILDR2Q71H61 639 aa22.99■■□□□ 1.27
CMTM3-212ENST00000566121 HFM1A2PYH4 1435 aa22.99■■□□□ 1.27
CMTM3-212ENST00000566121 MYO5BQ9ULV0 1848 aa22.97■■□□□ 1.27
CMTM3-212ENST00000566121 ADAMTS13Q76LX8 1427 aa22.97■■□□□ 1.27
CMTM3-212ENST00000566121 DIP2AQ14689 1571 aa22.97■■□□□ 1.27
CMTM3-212ENST00000566121 CHD2O14647 1828 aaKnown RBP22.96■■□□□ 1.27
CMTM3-212ENST00000566121 SOCS7O14512 581 aa22.95■■□□□ 1.26
CMTM3-212ENST00000566121 BCANQ96GW7 911 aa22.95■■□□□ 1.26
CMTM3-212ENST00000566121 CHGAP10645 457 aaKnown RBP22.94■■□□□ 1.26
CMTM3-212ENST00000566121 ACIN1Q9UKV3 1341 aaKnown RBP22.92■■□□□ 1.26
CMTM3-212ENST00000566121 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
CMTM3-212ENST00000566121 MSH6P52701 1360 aa22.9■■□□□ 1.26
CMTM3-212ENST00000566121 TRPM2O94759 1503 aa22.89■■□□□ 1.26
CMTM3-212ENST00000566121 SLAIN2Q9P270 581 aa22.87■■□□□ 1.25
CMTM3-212ENST00000566121 MED1Q15648 1581 aaPredicted RBP22.87■■□□□ 1.25
CMTM3-212ENST00000566121 SETBP1Q9Y6X0 1596 aa22.87■■□□□ 1.25
CMTM3-212ENST00000566121 C19orf44Q9H6X5 657 aa22.86■■□□□ 1.25
CMTM3-212ENST00000566121 RPGRIP1LQ68CZ1 1315 aa22.83■■□□□ 1.25
CMTM3-212ENST00000566121 CADPS2Q86UW7 1296 aa22.82■■□□□ 1.24
CMTM3-212ENST00000566121 AMOTL2Q9Y2J4 779 aa22.82■■□□□ 1.24
CMTM3-212ENST00000566121 NUTM2DQ5VT03 806 aaPredicted RBP22.81■■□□□ 1.24
CMTM3-212ENST00000566121 ZNF326Q5BKZ1 582 aaKnown RBP22.8■■□□□ 1.24
CMTM3-212ENST00000566121 SLC4A1APQ9BWU0 796 aaKnown RBP22.8■■□□□ 1.24
CMTM3-212ENST00000566121 VGFO15240 615 aaPredicted RBP22.79■■□□□ 1.24
CMTM3-212ENST00000566121 TRIM52Q96A61 297 aa22.79■■□□□ 1.24
CMTM3-212ENST00000566121 RBM33Q96EV2 1170 aaKnown RBP22.79■■□□□ 1.24
CMTM3-212ENST00000566121 PTPRUQ92729 1446 aa22.79■■□□□ 1.24
CMTM3-212ENST00000566121 CLTCL1P53675 1640 aa22.79■■□□□ 1.24
CMTM3-212ENST00000566121 NRXN3Q9Y4C0 1643 aa22.79■■□□□ 1.24
CMTM3-212ENST00000566121 NEXMIFQ5QGS0 1516 aa22.78■■□□□ 1.24
CMTM3-212ENST00000566121 DCCP43146 1447 aa22.78■■□□□ 1.24
CMTM3-212ENST00000566121 ROBO1Q9Y6N7 1651 aa22.77■■□□□ 1.24
CMTM3-212ENST00000566121 KIF1BO60333 1816 aa22.75■■□□□ 1.23
CMTM3-212ENST00000566121 ATF3P18847 181 aa22.74■■□□□ 1.23
CMTM3-212ENST00000566121 METP08581 1390 aa22.74■■□□□ 1.23
CMTM3-212ENST00000566121 PRAG1Q86YV5 1406 aa22.74■■□□□ 1.23
CMTM3-212ENST00000566121 XRN1Q8IZH2 1706 aaKnown RBP22.73■■□□□ 1.23
CMTM3-212ENST00000566121 PHF23Q9BUL5 403 aaPredicted RBP22.71■■□□□ 1.23
CMTM3-212ENST00000566121 SENP3Q9H4L4 574 aaPredicted RBP22.7■■□□□ 1.22
CMTM3-212ENST00000566121 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.7■■□□□ 1.22
CMTM3-212ENST00000566121 JCADQ9P266 1359 aa22.69■■□□□ 1.22
CMTM3-212ENST00000566121 C14orf37Q86TY3 774 aa22.69■■□□□ 1.22
CMTM3-212ENST00000566121 MPHOSPH9Q99550 1183 aa22.68■■□□□ 1.22
CMTM3-212ENST00000566121 RGS17Q9UGC6 210 aaPredicted RBP22.66■■□□□ 1.22
CMTM3-212ENST00000566121 PTCH1Q13635 1447 aa22.65■■□□□ 1.22
CMTM3-212ENST00000566121 AHDC1Q5TGY3 1603 aaPredicted RBP22.65■■□□□ 1.22
CMTM3-212ENST00000566121 CCDC144AA2RUR9 1427 aa22.64■■□□□ 1.21
CMTM3-212ENST00000566121 SPATA31E1Q6ZUB1 1445 aa22.64■■□□□ 1.21
CMTM3-212ENST00000566121 ADGRL3Q9HAR2 1447 aa22.64■■□□□ 1.21
CMTM3-212ENST00000566121 BRINP3Q76B58 766 aa22.63■■□□□ 1.21
CMTM3-212ENST00000566121 SPATA31A6Q5VVP1 1343 aa22.62■■□□□ 1.21
CMTM3-212ENST00000566121 SETD5Q9C0A6 1442 aa22.62■■□□□ 1.21
CMTM3-212ENST00000566121 ANKRD30BQ9BXX2 1392 aa22.62■■□□□ 1.21
CMTM3-212ENST00000566121 COL16A1Q07092 1604 aaPredicted RBP22.61■■□□□ 1.21
CMTM3-212ENST00000566121 PHLPP1O60346 1717 aa22.61■■□□□ 1.21
CMTM3-212ENST00000566121 HRCP23327 699 aa22.61■■□□□ 1.21
CMTM3-212ENST00000566121 MST1RQ04912 1400 aa22.6■■□□□ 1.21
CMTM3-212ENST00000566121 SETD1AO15047 1707 aaKnown RBP22.6■■□□□ 1.21
CMTM3-212ENST00000566121 PPLO60437 1756 aa22.58■■□□□ 1.21
CMTM3-212ENST00000566121 FOXD1Q16676 465 aa22.56■■□□□ 1.2
CMTM3-212ENST00000566121 ROBO2Q9HCK4 1378 aa22.55■■□□□ 1.2
CMTM3-212ENST00000566121 SIRT1Q96EB6 747 aa22.53■■□□□ 1.2
CMTM3-212ENST00000566121 TECPR2O15040 1411 aa22.53■■□□□ 1.2
CMTM3-212ENST00000566121 ADGRF5Q8IZF2 1346 aa22.53■■□□□ 1.2
CMTM3-212ENST00000566121 ASXL1Q8IXJ9 1541 aa22.52■■□□□ 1.2
CMTM3-212ENST00000566121 LRRC59Q96AG4 307 aaKnown RBP22.52■■□□□ 1.2
CMTM3-212ENST00000566121 ABCC11Q96J66 1382 aa22.51■■□□□ 1.19
CMTM3-212ENST00000566121 SHPRHQ149N8 1683 aa22.51■■□□□ 1.19
CMTM3-212ENST00000566121 C1orf167Q5SNV9 1468 aa22.5■■□□□ 1.19
CMTM3-212ENST00000566121 POTEAQ6S8J7 498 aa22.49■■□□□ 1.19
CMTM3-212ENST00000566121 LAMC1P11047 1609 aa22.49■■□□□ 1.19
CMTM3-212ENST00000566121 PIK3C2GO75747 1445 aa22.48■■□□□ 1.19
CMTM3-212ENST00000566121 RGL3Q3MIN7 710 aa22.48■■□□□ 1.19
CMTM3-212ENST00000566121 NHSL1Q5SYE7 1610 aa22.48■■□□□ 1.19
CMTM3-212ENST00000566121 LRPPRCP42704 1394 aaKnown RBP22.48■■□□□ 1.19
CMTM3-212ENST00000566121 RAB3GAP2Q9H2M9 1393 aa22.48■■□□□ 1.19
CMTM3-212ENST00000566121 STAC3Q96MF2 364 aa22.47■■□□□ 1.19
CMTM3-212ENST00000566121 NALCNQ8IZF0 1738 aa22.47■■□□□ 1.19
CMTM3-212ENST00000566121 IFT172Q9UG01 1749 aa22.47■■□□□ 1.19
CMTM3-212ENST00000566121 NRXN1Q9ULB1 1477 aa22.47■■□□□ 1.19
CMTM3-212ENST00000566121 C14orf93Q9H972 538 aaKnown RBP22.46■■□□□ 1.19
CMTM3-212ENST00000566121 ZNF772Q68DY9 489 aaPredicted RBP22.45■■□□□ 1.18
CMTM3-212ENST00000566121 SOS2Q07890 1332 aaPredicted RBP22.44■■□□□ 1.18
CMTM3-212ENST00000566121 LRP6O75581 1613 aa22.43■■□□□ 1.18
CMTM3-212ENST00000566121 MYOM2P54296 1465 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms