RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 SENP3Q9H4L4 574 aaPredicted RBP27.68■■■□□ 2.02
CLN3-221ENST00000566057 XIRP1Q702N8 1843 aaKnown RBP27.66■■■□□ 2.02
CLN3-221ENST00000566057 NUTM2DQ5VT03 806 aaPredicted RBP27.64■■■□□ 2.02
CLN3-221ENST00000566057 HDGFP51858 240 aaKnown RBP27.63■■■□□ 2.01
CLN3-221ENST00000566057 BCANQ96GW7 911 aa27.63■■■□□ 2.01
CLN3-221ENST00000566057 PLEKHG1Q9ULL1 1385 aa27.62■■■□□ 2.01
CLN3-221ENST00000566057 PPP1R15AO75807 674 aaPredicted RBP27.62■■■□□ 2.01
CLN3-221ENST00000566057 CLTCL1P53675 1640 aa27.61■■■□□ 2.01
CLN3-221ENST00000566057 ALKQ9UM73 1620 aa27.61■■■□□ 2.01
CLN3-221ENST00000566057 TOM1O60784 492 aa27.6■■■□□ 2.01
CLN3-221ENST00000566057 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.6■■■□□ 2.01
CLN3-221ENST00000566057 TRPM2O94759 1503 aa27.6■■■□□ 2.01
CLN3-221ENST00000566057 KCNA6P17658 529 aa27.58■■■□□ 2.01
CLN3-221ENST00000566057 SLC4A1APQ9BWU0 796 aaKnown RBP27.58■■■□□ 2.01
CLN3-221ENST00000566057 CHD2O14647 1828 aaKnown RBP27.57■■■□□ 2
CLN3-221ENST00000566057 PIP4K2BP78356 416 aa27.57■■■□□ 2
CLN3-221ENST00000566057 KIF1BO60333 1816 aa27.57■■■□□ 2
CLN3-221ENST00000566057 SCAF1Q9H7N4 1312 aaKnown RBP27.54■■■□□ 2
CLN3-221ENST00000566057 NWD1Q149M9 1564 aa27.53■■■□□ 2
CLN3-221ENST00000566057 ADAMTS13Q76LX8 1427 aa27.52■■■□□ 2
CLN3-221ENST00000566057 TBX22Q9Y458 520 aa27.52■■■□□ 2
CLN3-221ENST00000566057 ZNF326Q5BKZ1 582 aaKnown RBP27.51■■□□□ 1.99
CLN3-221ENST00000566057 FOXD1Q16676 465 aa27.5■■□□□ 1.99
CLN3-221ENST00000566057 TMEM94Q12767 1356 aa27.49■■□□□ 1.99
CLN3-221ENST00000566057 PROSER2Q86WR7 435 aaPredicted RBP27.49■■□□□ 1.99
CLN3-221ENST00000566057 RBM33Q96EV2 1170 aaKnown RBP27.49■■□□□ 1.99
CLN3-221ENST00000566057 SETD5Q9C0A6 1442 aa27.47■■□□□ 1.99
CLN3-221ENST00000566057 NKTRP30414 1462 aaKnown RBP27.46■■□□□ 1.99
CLN3-221ENST00000566057 NRXN3Q9Y4C0 1643 aa27.46■■□□□ 1.99
CLN3-221ENST00000566057 MPHOSPH9Q99550 1183 aa27.46■■□□□ 1.99
CLN3-221ENST00000566057 DIP2AQ14689 1571 aa27.46■■□□□ 1.99
CLN3-221ENST00000566057 NEXMIFQ5QGS0 1516 aa27.46■■□□□ 1.99
CLN3-221ENST00000566057 HSPA1LP34931 641 aa27.45■■□□□ 1.98
CLN3-221ENST00000566057 SETBP1Q9Y6X0 1596 aa27.41■■□□□ 1.98
CLN3-221ENST00000566057 PIK3R4Q99570 1358 aa27.39■■□□□ 1.98
CLN3-221ENST00000566057 PTPRUQ92729 1446 aa27.38■■□□□ 1.97
CLN3-221ENST00000566057 RAB3GAP2Q9H2M9 1393 aa27.37■■□□□ 1.97
CLN3-221ENST00000566057 PPLO60437 1756 aa27.35■■□□□ 1.97
CLN3-221ENST00000566057 AMOTL2Q9Y2J4 779 aa27.34■■□□□ 1.97
CLN3-221ENST00000566057 ACIN1Q9UKV3 1341 aaKnown RBP27.33■■□□□ 1.97
CLN3-221ENST00000566057 METP08581 1390 aa27.32■■□□□ 1.96
CLN3-221ENST00000566057 CCDC144AA2RUR9 1427 aa27.32■■□□□ 1.96
CLN3-221ENST00000566057 XRN1Q8IZH2 1706 aaKnown RBP27.31■■□□□ 1.96
CLN3-221ENST00000566057 RPGRIP1LQ68CZ1 1315 aa27.31■■□□□ 1.96
CLN3-221ENST00000566057 MSH6P52701 1360 aa27.31■■□□□ 1.96
CLN3-221ENST00000566057 DISP3Q9P2K9 1392 aa27.31■■□□□ 1.96
CLN3-221ENST00000566057 VGFO15240 615 aaPredicted RBP27.3■■□□□ 1.96
CLN3-221ENST00000566057 SETD1AO15047 1707 aaKnown RBP27.28■■□□□ 1.96
CLN3-221ENST00000566057 FAM135BQ49AJ0 1406 aa27.27■■□□□ 1.96
CLN3-221ENST00000566057 SPATA31E1Q6ZUB1 1445 aa27.27■■□□□ 1.96
CLN3-221ENST00000566057 NCOA3Q9Y6Q9 1424 aa27.27■■□□□ 1.96
CLN3-221ENST00000566057 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.27■■□□□ 1.96
CLN3-221ENST00000566057 ROBO1Q9Y6N7 1651 aa27.27■■□□□ 1.96
CLN3-221ENST00000566057 RGL3Q3MIN7 710 aa27.25■■□□□ 1.95
CLN3-221ENST00000566057 IFT172Q9UG01 1749 aa27.24■■□□□ 1.95
CLN3-221ENST00000566057 C14orf37Q86TY3 774 aa27.24■■□□□ 1.95
CLN3-221ENST00000566057 SLAIN2Q9P270 581 aa27.24■■□□□ 1.95
CLN3-221ENST00000566057 C19orf44Q9H6X5 657 aa27.21■■□□□ 1.95
CLN3-221ENST00000566057 ADGRF5Q8IZF2 1346 aa27.19■■□□□ 1.94
CLN3-221ENST00000566057 HRCP23327 699 aa27.18■■□□□ 1.94
CLN3-221ENST00000566057 MED1Q15648 1581 aaPredicted RBP27.17■■□□□ 1.94
CLN3-221ENST00000566057 ATF3P18847 181 aa27.15■■□□□ 1.94
CLN3-221ENST00000566057 ILDR2Q71H61 639 aa27.14■■□□□ 1.94
CLN3-221ENST00000566057 CADPS2Q86UW7 1296 aa27.14■■□□□ 1.94
CLN3-221ENST00000566057 ANKRD30BQ9BXX2 1392 aa27.13■■□□□ 1.93
CLN3-221ENST00000566057 NALCNQ8IZF0 1738 aa27.12■■□□□ 1.93
CLN3-221ENST00000566057 PHLPP1O60346 1717 aa27.1■■□□□ 1.93
CLN3-221ENST00000566057 ROBO2Q9HCK4 1378 aa27.09■■□□□ 1.93
CLN3-221ENST00000566057 DCCP43146 1447 aa27.08■■□□□ 1.93
CLN3-221ENST00000566057 PTCH1Q13635 1447 aa27.07■■□□□ 1.92
CLN3-221ENST00000566057 ADGRL3Q9HAR2 1447 aa27.07■■□□□ 1.92
CLN3-221ENST00000566057 PIK3C2GO75747 1445 aa27.06■■□□□ 1.92
CLN3-221ENST00000566057 PRAG1Q86YV5 1406 aa27.06■■□□□ 1.92
CLN3-221ENST00000566057 MST1RQ04912 1400 aa27.03■■□□□ 1.92
CLN3-221ENST00000566057 ASXL1Q8IXJ9 1541 aa27.03■■□□□ 1.92
CLN3-221ENST00000566057 COL16A1Q07092 1604 aaPredicted RBP27.02■■□□□ 1.92
CLN3-221ENST00000566057 TMEM132EQ6IEE7 984 aa27.02■■□□□ 1.92
CLN3-221ENST00000566057 NRXN1Q9ULB1 1477 aa27.01■■□□□ 1.91
CLN3-221ENST00000566057 BRINP3Q76B58 766 aa27.01■■□□□ 1.91
CLN3-221ENST00000566057 STK26Q9P289 416 aa27■■□□□ 1.91
CLN3-221ENST00000566057 MYOM2P54296 1465 aa27■■□□□ 1.91
CLN3-221ENST00000566057 AHDC1Q5TGY3 1603 aaPredicted RBP26.99■■□□□ 1.91
CLN3-221ENST00000566057 C14orf93Q9H972 538 aaKnown RBP26.98■■□□□ 1.91
CLN3-221ENST00000566057 LRPPRCP42704 1394 aaKnown RBP26.97■■□□□ 1.91
CLN3-221ENST00000566057 KNDC1Q76NI1 1749 aa26.96■■□□□ 1.91
CLN3-221ENST00000566057 CFAP70Q5T0N1 1121 aa26.96■■□□□ 1.91
CLN3-221ENST00000566057 TECPR2O15040 1411 aa26.95■■□□□ 1.9
CLN3-221ENST00000566057 WAPLQ7Z5K2 1190 aa26.94■■□□□ 1.9
CLN3-221ENST00000566057 ABCC11Q96J66 1382 aa26.94■■□□□ 1.9
CLN3-221ENST00000566057 LAMC1P11047 1609 aa26.94■■□□□ 1.9
CLN3-221ENST00000566057 YTHDC2Q9H6S0 1430 aaKnown RBP26.93■■□□□ 1.9
CLN3-221ENST00000566057 PHF23Q9BUL5 403 aaPredicted RBP26.93■■□□□ 1.9
CLN3-221ENST00000566057 NHSL1Q5SYE7 1610 aa26.93■■□□□ 1.9
CLN3-221ENST00000566057 JCADQ9P266 1359 aa26.92■■□□□ 1.9
CLN3-221ENST00000566057 DCAF11Q8TEB1 546 aa26.91■■□□□ 1.9
CLN3-221ENST00000566057 KDM2AQ9Y2K7 1162 aa26.91■■□□□ 1.9
CLN3-221ENST00000566057 C1orf167Q5SNV9 1468 aa26.91■■□□□ 1.9
CLN3-221ENST00000566057 PLEKHH1Q9ULM0 1364 aa26.9■■□□□ 1.9
CLN3-221ENST00000566057 DDX17Q92841 729 aaKnown RBP26.89■■□□□ 1.9
CLN3-221ENST00000566057 DHX57Q6P158 1386 aaKnown RBP26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms