RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 PROSER2Q86WR7 435 aaPredicted RBP13.21□□□□□ -0.29
CAPN3-213ENST00000565173 GCC2Q8IWJ2 1684 aa13.21□□□□□ -0.3
CAPN3-213ENST00000565173 FAM135BQ49AJ0 1406 aa13.21□□□□□ -0.3
CAPN3-213ENST00000565173 PLEKHG1Q9ULL1 1385 aa13.2□□□□□ -0.3
CAPN3-213ENST00000565173 MYO5BQ9ULV0 1848 aa13.2□□□□□ -0.3
CAPN3-213ENST00000565173 PPARGC1BQ86YN6 1023 aaKnown RBP13.2□□□□□ -0.3
CAPN3-213ENST00000565173 E9PCH4 1651 aa13.2□□□□□ -0.3
CAPN3-213ENST00000565173 RIMS2Q9UQ26 1411 aa13.2□□□□□ -0.3
CAPN3-213ENST00000565173 NWD1Q149M9 1564 aa13.2□□□□□ -0.3
CAPN3-213ENST00000565173 IQGAP3Q86VI3 1631 aa13.19□□□□□ -0.3
CAPN3-213ENST00000565173 NKTRP30414 1462 aaKnown RBP13.18□□□□□ -0.3
CAPN3-213ENST00000565173 ITGAEP38570 1179 aa13.18□□□□□ -0.3
CAPN3-213ENST00000565173 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
CAPN3-213ENST00000565173 BCANQ96GW7 911 aa13.18□□□□□ -0.3
CAPN3-213ENST00000565173 TBX22Q9Y458 520 aa13.18□□□□□ -0.3
CAPN3-213ENST00000565173 NUP155O75694 1391 aa13.18□□□□□ -0.3
CAPN3-213ENST00000565173 CHGAP10645 457 aaKnown RBP13.16□□□□□ -0.3
CAPN3-213ENST00000565173 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.16□□□□□ -0.3
CAPN3-213ENST00000565173 RGS17Q9UGC6 210 aaPredicted RBP13.16□□□□□ -0.3
CAPN3-213ENST00000565173 CHD2O14647 1828 aaKnown RBP13.16□□□□□ -0.3
CAPN3-213ENST00000565173 ADAMTS13Q76LX8 1427 aa13.15□□□□□ -0.3
CAPN3-213ENST00000565173 PPP1R15AO75807 674 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-213ENST00000565173 NUTM2DQ5VT03 806 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-213ENST00000565173 PHF23Q9BUL5 403 aaPredicted RBP13.15□□□□□ -0.3
CAPN3-213ENST00000565173 SLAIN2Q9P270 581 aa13.14□□□□□ -0.31
CAPN3-213ENST00000565173 ROBO1Q9Y6N7 1651 aa13.14□□□□□ -0.31
CAPN3-213ENST00000565173 MSH6P52701 1360 aa13.13□□□□□ -0.31
CAPN3-213ENST00000565173 NCOA3Q9Y6Q9 1424 aa13.11□□□□□ -0.31
CAPN3-213ENST00000565173 PIK3R4Q99570 1358 aa13.1□□□□□ -0.31
CAPN3-213ENST00000565173 RRBP1Q9P2E9 1410 aaKnown RBP13.1□□□□□ -0.31
CAPN3-213ENST00000565173 DIP2AQ14689 1571 aa13.09□□□□□ -0.31
CAPN3-213ENST00000565173 PTPRUQ92729 1446 aa13.09□□□□□ -0.31
CAPN3-213ENST00000565173 C19orf44Q9H6X5 657 aa13.08□□□□□ -0.32
CAPN3-213ENST00000565173 AMOTL2Q9Y2J4 779 aa13.08□□□□□ -0.32
CAPN3-213ENST00000565173 NAIPQ13075 1403 aa13.07□□□□□ -0.32
CAPN3-213ENST00000565173 SPHKAPQ2M3C7 1700 aa13.07□□□□□ -0.32
CAPN3-213ENST00000565173 POTEAQ6S8J7 498 aa13.06□□□□□ -0.32
CAPN3-213ENST00000565173 NRXN3Q9Y4C0 1643 aa13.06□□□□□ -0.32
CAPN3-213ENST00000565173 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.05□□□□□ -0.32
CAPN3-213ENST00000565173 TRPM2O94759 1503 aa13.05□□□□□ -0.32
CAPN3-213ENST00000565173 CADPS2Q86UW7 1296 aa13.05□□□□□ -0.32
CAPN3-213ENST00000565173 SETBP1Q9Y6X0 1596 aa13.05□□□□□ -0.32
CAPN3-213ENST00000565173 PHLPP1O60346 1717 aa13.05□□□□□ -0.32
CAPN3-213ENST00000565173 C14orf37Q86TY3 774 aa13.04□□□□□ -0.32
CAPN3-213ENST00000565173 METP08581 1390 aa13.04□□□□□ -0.32
CAPN3-213ENST00000565173 JCADQ9P266 1359 aa13.04□□□□□ -0.32
CAPN3-213ENST00000565173 CLTCL1P53675 1640 aa13.03□□□□□ -0.32
CAPN3-213ENST00000565173 ATF3P18847 181 aa13.03□□□□□ -0.32
CAPN3-213ENST00000565173 ZNF326Q5BKZ1 582 aaKnown RBP13.03□□□□□ -0.32
CAPN3-213ENST00000565173 COL16A1Q07092 1604 aaPredicted RBP13.02□□□□□ -0.32
CAPN3-213ENST00000565173 XRN1Q8IZH2 1706 aaKnown RBP13.02□□□□□ -0.33
CAPN3-213ENST00000565173 BRINP3Q76B58 766 aa13.01□□□□□ -0.33
CAPN3-213ENST00000565173 NEXMIFQ5QGS0 1516 aa13.01□□□□□ -0.33
CAPN3-213ENST00000565173 AHDC1Q5TGY3 1603 aaPredicted RBP13□□□□□ -0.33
CAPN3-213ENST00000565173 HFM1A2PYH4 1435 aa13□□□□□ -0.33
CAPN3-213ENST00000565173 DCCP43146 1447 aa12.99□□□□□ -0.33
CAPN3-213ENST00000565173 LRP6O75581 1613 aa12.98□□□□□ -0.33
CAPN3-213ENST00000565173 MST1RQ04912 1400 aa12.97□□□□□ -0.33
CAPN3-213ENST00000565173 SPATA31A6Q5VVP1 1343 aa12.97□□□□□ -0.33
CAPN3-213ENST00000565173 TRIM52Q96A61 297 aa12.97□□□□□ -0.33
CAPN3-213ENST00000565173 SLC4A1APQ9BWU0 796 aaKnown RBP12.96□□□□□ -0.33
CAPN3-213ENST00000565173 KIF1BO60333 1816 aa12.96□□□□□ -0.33
CAPN3-213ENST00000565173 VGFO15240 615 aaPredicted RBP12.95□□□□□ -0.34
CAPN3-213ENST00000565173 ADGRL3Q9HAR2 1447 aa12.95□□□□□ -0.34
CAPN3-213ENST00000565173 ASXL1Q8IXJ9 1541 aa12.94□□□□□ -0.34
CAPN3-213ENST00000565173 SHPRHQ149N8 1683 aa12.94□□□□□ -0.34
CAPN3-213ENST00000565173 SETD1AO15047 1707 aaKnown RBP12.93□□□□□ -0.34
CAPN3-213ENST00000565173 RPGRIP1LQ68CZ1 1315 aa12.93□□□□□ -0.34
CAPN3-213ENST00000565173 FOXD1Q16676 465 aa12.93□□□□□ -0.34
CAPN3-213ENST00000565173 SETD5Q9C0A6 1442 aa12.93□□□□□ -0.34
CAPN3-213ENST00000565173 ROBO2Q9HCK4 1378 aa12.93□□□□□ -0.34
CAPN3-213ENST00000565173 NHSL1Q5SYE7 1610 aa12.92□□□□□ -0.34
CAPN3-213ENST00000565173 NALCNQ8IZF0 1738 aa12.92□□□□□ -0.34
CAPN3-213ENST00000565173 DDX17Q92841 729 aaKnown RBP12.92□□□□□ -0.34
CAPN3-213ENST00000565173 PTCH1Q13635 1447 aa12.9□□□□□ -0.34
CAPN3-213ENST00000565173 PRAG1Q86YV5 1406 aa12.9□□□□□ -0.34
CAPN3-213ENST00000565173 MEX3CQ5U5Q3 659 aaKnown RBP12.9□□□□□ -0.34
CAPN3-213ENST00000565173 ZNF772Q68DY9 489 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-213ENST00000565173 LRRC59Q96AG4 307 aaKnown RBP12.9□□□□□ -0.34
CAPN3-213ENST00000565173 NUTM2BA6NNL0 878 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-213ENST00000565173 NUTM2EB1AL46 878 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-213ENST00000565173 NUTM2AQ8IVF1 878 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-213ENST00000565173 C1orf167Q5SNV9 1468 aa12.89□□□□□ -0.35
CAPN3-213ENST00000565173 PPLO60437 1756 aa12.89□□□□□ -0.35
CAPN3-213ENST00000565173 MPHOSPH9Q99550 1183 aa12.88□□□□□ -0.35
CAPN3-213ENST00000565173 ORAI2Q96SN7 254 aa12.87□□□□□ -0.35
CAPN3-213ENST00000565173 SPATA31E1Q6ZUB1 1445 aa12.87□□□□□ -0.35
CAPN3-213ENST00000565173 ADGRF5Q8IZF2 1346 aa12.87□□□□□ -0.35
CAPN3-213ENST00000565173 PNPLA6Q8IY17 1366 aa12.86□□□□□ -0.35
CAPN3-213ENST00000565173 LAMC1P11047 1609 aa12.86□□□□□ -0.35
CAPN3-213ENST00000565173 SOS2Q07890 1332 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-213ENST00000565173 RGL3Q3MIN7 710 aa12.85□□□□□ -0.35
CAPN3-213ENST00000565173 AFF2P51816 1311 aa12.85□□□□□ -0.35
CAPN3-213ENST00000565173 RXRBP28702 533 aa12.84□□□□□ -0.35
CAPN3-213ENST00000565173 CCDC144AA2RUR9 1427 aa12.84□□□□□ -0.35
CAPN3-213ENST00000565173 ANKRD30BQ9BXX2 1392 aa12.82□□□□□ -0.36
CAPN3-213ENST00000565173 UPF1Q92900 1129 aaKnown RBP eCLIP12.82□□□□□ -0.36
CAPN3-213ENST00000565173 C8orf37Q96NL8 207 aa12.82□□□□□ -0.36
CAPN3-213ENST00000565173 TECPR2O15040 1411 aa12.81□□□□□ -0.36
CAPN3-213ENST00000565173 TMEM132EQ6IEE7 984 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms