RNA–Protein interactions for RNA: ENST00000565003.5

CMTM3-209, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-209ENST00000565003 XIRP1Q702N8 1843 aaKnown RBP15.25■□□□□ 0.03
CMTM3-209ENST00000565003 DISP3Q9P2K9 1392 aa15.24■□□□□ 0.03
CMTM3-209ENST00000565003 SENP3Q9H4L4 574 aaPredicted RBP15.24■□□□□ 0.03
CMTM3-209ENST00000565003 PLEKHG1Q9ULL1 1385 aa15.24■□□□□ 0.03
CMTM3-209ENST00000565003 CHGAP10645 457 aaKnown RBP15.23■□□□□ 0.03
CMTM3-209ENST00000565003 HSPA1LP34931 641 aa15.23■□□□□ 0.03
CMTM3-209ENST00000565003 NWD1Q149M9 1564 aa15.23■□□□□ 0.03
CMTM3-209ENST00000565003 KCNA6P17658 529 aa15.22■□□□□ 0.03
CMTM3-209ENST00000565003 HFM1A2PYH4 1435 aa15.22■□□□□ 0.03
CMTM3-209ENST00000565003 SPHKAPQ2M3C7 1700 aa15.22■□□□□ 0.03
CMTM3-209ENST00000565003 PPP1R15AO75807 674 aaPredicted RBP15.21■□□□□ 0.03
CMTM3-209ENST00000565003 TMEM94Q12767 1356 aa15.21■□□□□ 0.02
CMTM3-209ENST00000565003 NUTM2DQ5VT03 806 aaPredicted RBP15.2■□□□□ 0.02
CMTM3-209ENST00000565003 BCANQ96GW7 911 aa15.2■□□□□ 0.02
CMTM3-209ENST00000565003 NKTRP30414 1462 aaKnown RBP15.2■□□□□ 0.02
CMTM3-209ENST00000565003 HDGFP51858 240 aaKnown RBP15.19■□□□□ 0.02
CMTM3-209ENST00000565003 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.18■□□□□ 0.02
CMTM3-209ENST00000565003 RBM33Q96EV2 1170 aaKnown RBP15.18■□□□□ 0.02
CMTM3-209ENST00000565003 ADAMTS13Q76LX8 1427 aa15.17■□□□□ 0.02
CMTM3-209ENST00000565003 CLTCL1P53675 1640 aa15.17■□□□□ 0.02
CMTM3-209ENST00000565003 TRPM2O94759 1503 aa15.17■□□□□ 0.02
CMTM3-209ENST00000565003 CHD2O14647 1828 aaKnown RBP15.16■□□□□ 0.02
CMTM3-209ENST00000565003 ILDR2Q71H61 639 aa15.16■□□□□ 0.02
CMTM3-209ENST00000565003 PROSER2Q86WR7 435 aaPredicted RBP15.16■□□□□ 0.02
CMTM3-209ENST00000565003 TBX22Q9Y458 520 aa15.15■□□□□ 0.02
CMTM3-209ENST00000565003 DIP2AQ14689 1571 aa15.15■□□□□ 0.02
CMTM3-209ENST00000565003 MED1Q15648 1581 aaPredicted RBP15.13■□□□□ 0.01
CMTM3-209ENST00000565003 TRIM52Q96A61 297 aa15.13■□□□□ 0.01
CMTM3-209ENST00000565003 NRXN3Q9Y4C0 1643 aa15.13■□□□□ 0.01
CMTM3-209ENST00000565003 NEXMIFQ5QGS0 1516 aa15.11■□□□□ 0.01
CMTM3-209ENST00000565003 SETBP1Q9Y6X0 1596 aa15.11■□□□□ 0.01
CMTM3-209ENST00000565003 FAM135BQ49AJ0 1406 aa15.1■□□□□ 0.01
CMTM3-209ENST00000565003 ZNF326Q5BKZ1 582 aaKnown RBP15.1■□□□□ 0.01
CMTM3-209ENST00000565003 MSH6P52701 1360 aa15.1■□□□□ 0.01
CMTM3-209ENST00000565003 PIK3R4Q99570 1358 aa15.1■□□□□ 0.01
CMTM3-209ENST00000565003 PTPRUQ92729 1446 aa15.09■□□□□ 0.01
CMTM3-209ENST00000565003 SLC4A1APQ9BWU0 796 aaKnown RBP15.09■□□□□ 0.01
CMTM3-209ENST00000565003 ROBO1Q9Y6N7 1651 aa15.09■□□□□ 0.01
CMTM3-209ENST00000565003 KIF1BO60333 1816 aa15.08■□□□□ 0.01
CMTM3-209ENST00000565003 XRN1Q8IZH2 1706 aaKnown RBP15.06■□□□□ 0
CMTM3-209ENST00000565003 AMOTL2Q9Y2J4 779 aa15.06■□□□□ 0
CMTM3-209ENST00000565003 NCOA3Q9Y6Q9 1424 aa15.06■□□□□ 0
CMTM3-209ENST00000565003 FOXD1Q16676 465 aa15.05■□□□□ -0
CMTM3-209ENST00000565003 METP08581 1390 aa15.05■□□□□ -0
CMTM3-209ENST00000565003 SLAIN2Q9P270 581 aa15.03■□□□□ -0
CMTM3-209ENST00000565003 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.03■□□□□ -0
CMTM3-209ENST00000565003 C14orf37Q86TY3 774 aa15.02■□□□□ -0
CMTM3-209ENST00000565003 MPHOSPH9Q99550 1183 aa15.01□□□□□ -0.01
CMTM3-209ENST00000565003 SETD1AO15047 1707 aaKnown RBP15□□□□□ -0.01
CMTM3-209ENST00000565003 SOCS7O14512 581 aa15□□□□□ -0.01
CMTM3-209ENST00000565003 C19orf44Q9H6X5 657 aa15□□□□□ -0.01
CMTM3-209ENST00000565003 PPLO60437 1756 aa15□□□□□ -0.01
CMTM3-209ENST00000565003 CCDC144AA2RUR9 1427 aa14.99□□□□□ -0.01
CMTM3-209ENST00000565003 RPGRIP1LQ68CZ1 1315 aa14.98□□□□□ -0.01
CMTM3-209ENST00000565003 PHLPP1O60346 1717 aa14.98□□□□□ -0.01
CMTM3-209ENST00000565003 VGFO15240 615 aaPredicted RBP14.98□□□□□ -0.01
CMTM3-209ENST00000565003 CADPS2Q86UW7 1296 aa14.98□□□□□ -0.01
CMTM3-209ENST00000565003 PHF23Q9BUL5 403 aaPredicted RBP14.98□□□□□ -0.01
CMTM3-209ENST00000565003 SETD5Q9C0A6 1442 aa14.98□□□□□ -0.01
CMTM3-209ENST00000565003 ATF3P18847 181 aa14.97□□□□□ -0.01
CMTM3-209ENST00000565003 DCCP43146 1447 aa14.97□□□□□ -0.01
CMTM3-209ENST00000565003 SPATA31E1Q6ZUB1 1445 aa14.97□□□□□ -0.01
CMTM3-209ENST00000565003 COL16A1Q07092 1604 aaPredicted RBP14.95□□□□□ -0.02
CMTM3-209ENST00000565003 RAB3GAP2Q9H2M9 1393 aa14.95□□□□□ -0.02
CMTM3-209ENST00000565003 NALCNQ8IZF0 1738 aa14.95□□□□□ -0.02
CMTM3-209ENST00000565003 PTCH1Q13635 1447 aa14.94□□□□□ -0.02
CMTM3-209ENST00000565003 ADGRL3Q9HAR2 1447 aa14.94□□□□□ -0.02
CMTM3-209ENST00000565003 AHDC1Q5TGY3 1603 aaPredicted RBP14.94□□□□□ -0.02
CMTM3-209ENST00000565003 MST1RQ04912 1400 aa14.93□□□□□ -0.02
CMTM3-209ENST00000565003 PRAG1Q86YV5 1406 aa14.93□□□□□ -0.02
CMTM3-209ENST00000565003 IFT172Q9UG01 1749 aa14.93□□□□□ -0.02
CMTM3-209ENST00000565003 ROBO2Q9HCK4 1378 aa14.93□□□□□ -0.02
CMTM3-209ENST00000565003 ADGRF5Q8IZF2 1346 aa14.92□□□□□ -0.02
CMTM3-209ENST00000565003 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
CMTM3-209ENST00000565003 BRINP3Q76B58 766 aa14.92□□□□□ -0.02
CMTM3-209ENST00000565003 RGS17Q9UGC6 210 aaPredicted RBP14.92□□□□□ -0.02
CMTM3-209ENST00000565003 JCADQ9P266 1359 aa14.92□□□□□ -0.02
CMTM3-209ENST00000565003 ASXL1Q8IXJ9 1541 aa14.92□□□□□ -0.02
CMTM3-209ENST00000565003 ACIN1Q9UKV3 1341 aaKnown RBP14.91□□□□□ -0.02
CMTM3-209ENST00000565003 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
CMTM3-209ENST00000565003 PIK3C2GO75747 1445 aa14.88□□□□□ -0.03
CMTM3-209ENST00000565003 LRP6O75581 1613 aa14.87□□□□□ -0.03
CMTM3-209ENST00000565003 NHSL1Q5SYE7 1610 aa14.87□□□□□ -0.03
CMTM3-209ENST00000565003 SHPRHQ149N8 1683 aa14.86□□□□□ -0.03
CMTM3-209ENST00000565003 C1orf167Q5SNV9 1468 aa14.85□□□□□ -0.03
CMTM3-209ENST00000565003 TECPR2O15040 1411 aa14.84□□□□□ -0.03
CMTM3-209ENST00000565003 NRXN1Q9ULB1 1477 aa14.84□□□□□ -0.03
CMTM3-209ENST00000565003 DDX17Q92841 729 aaKnown RBP14.84□□□□□ -0.03
CMTM3-209ENST00000565003 SPATA31A6Q5VVP1 1343 aa14.84□□□□□ -0.03
CMTM3-209ENST00000565003 LRPPRCP42704 1394 aaKnown RBP14.84□□□□□ -0.03
CMTM3-209ENST00000565003 MYOM2P54296 1465 aa14.83□□□□□ -0.03
CMTM3-209ENST00000565003 TMEM132EQ6IEE7 984 aa14.83□□□□□ -0.04
CMTM3-209ENST00000565003 POTEAQ6S8J7 498 aa14.83□□□□□ -0.04
CMTM3-209ENST00000565003 CDC42BPGQ6DT37 1551 aa14.82□□□□□ -0.04
CMTM3-209ENST00000565003 STK26Q9P289 416 aa14.82□□□□□ -0.04
CMTM3-209ENST00000565003 KNDC1Q76NI1 1749 aa14.82□□□□□ -0.04
CMTM3-209ENST00000565003 ABCC11Q96J66 1382 aa14.81□□□□□ -0.04
CMTM3-209ENST00000565003 LAMC1P11047 1609 aa14.81□□□□□ -0.04
CMTM3-209ENST00000565003 WAPLQ7Z5K2 1190 aa14.8□□□□□ -0.04
CMTM3-209ENST00000565003 ORAI2Q96SN7 254 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms