RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RIMS2Q9UQ26 1411 aa16.47■□□□□ 0.23
VPS39-208ENST00000564994 SPHKAPQ2M3C7 1700 aa16.47■□□□□ 0.23
VPS39-208ENST00000564994 CHGAP10645 457 aaKnown RBP16.45■□□□□ 0.22
VPS39-208ENST00000564994 HSPA1LP34931 641 aa16.45■□□□□ 0.22
VPS39-208ENST00000564994 SENP3Q9H4L4 574 aaPredicted RBP16.45■□□□□ 0.22
VPS39-208ENST00000564994 DISP3Q9P2K9 1392 aa16.45■□□□□ 0.22
VPS39-208ENST00000564994 NWD1Q149M9 1564 aa16.44■□□□□ 0.22
VPS39-208ENST00000564994 PLEKHG1Q9ULL1 1385 aa16.44■□□□□ 0.22
VPS39-208ENST00000564994 CHD2O14647 1828 aaKnown RBP16.43■□□□□ 0.22
VPS39-208ENST00000564994 KCNA6P17658 529 aa16.43■□□□□ 0.22
VPS39-208ENST00000564994 NUTM2DQ5VT03 806 aaPredicted RBP16.41■□□□□ 0.22
VPS39-208ENST00000564994 BCANQ96GW7 911 aa16.41■□□□□ 0.22
VPS39-208ENST00000564994 HFM1A2PYH4 1435 aa16.41■□□□□ 0.22
VPS39-208ENST00000564994 TMEM94Q12767 1356 aa16.4■□□□□ 0.22
VPS39-208ENST00000564994 PPP1R15AO75807 674 aaPredicted RBP16.4■□□□□ 0.22
VPS39-208ENST00000564994 CLTCL1P53675 1640 aa16.39■□□□□ 0.21
VPS39-208ENST00000564994 HDGFP51858 240 aaKnown RBP16.39■□□□□ 0.21
VPS39-208ENST00000564994 RBM33Q96EV2 1170 aaKnown RBP16.39■□□□□ 0.21
VPS39-208ENST00000564994 NKTRP30414 1462 aaKnown RBP16.39■□□□□ 0.21
VPS39-208ENST00000564994 ADAMTS13Q76LX8 1427 aa16.38■□□□□ 0.21
VPS39-208ENST00000564994 ILDR2Q71H61 639 aa16.38■□□□□ 0.21
VPS39-208ENST00000564994 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS39-208ENST00000564994 TRPM2O94759 1503 aa16.37■□□□□ 0.21
VPS39-208ENST00000564994 PROSER2Q86WR7 435 aaPredicted RBP16.37■□□□□ 0.21
VPS39-208ENST00000564994 TBX22Q9Y458 520 aa16.36■□□□□ 0.21
VPS39-208ENST00000564994 DIP2AQ14689 1571 aa16.35■□□□□ 0.21
VPS39-208ENST00000564994 NRXN3Q9Y4C0 1643 aa16.35■□□□□ 0.21
VPS39-208ENST00000564994 KIF1BO60333 1816 aa16.35■□□□□ 0.21
VPS39-208ENST00000564994 MED1Q15648 1581 aaPredicted RBP16.34■□□□□ 0.21
VPS39-208ENST00000564994 TRIM52Q96A61 297 aa16.33■□□□□ 0.2
VPS39-208ENST00000564994 NEXMIFQ5QGS0 1516 aa16.32■□□□□ 0.2
VPS39-208ENST00000564994 SETBP1Q9Y6X0 1596 aa16.31■□□□□ 0.2
VPS39-208ENST00000564994 ROBO1Q9Y6N7 1651 aa16.3■□□□□ 0.2
VPS39-208ENST00000564994 FAM135BQ49AJ0 1406 aa16.3■□□□□ 0.2
VPS39-208ENST00000564994 PTPRUQ92729 1446 aa16.3■□□□□ 0.2
VPS39-208ENST00000564994 PIK3R4Q99570 1358 aa16.3■□□□□ 0.2
VPS39-208ENST00000564994 ZNF326Q5BKZ1 582 aaKnown RBP16.3■□□□□ 0.2
VPS39-208ENST00000564994 SLC4A1APQ9BWU0 796 aaKnown RBP16.29■□□□□ 0.2
VPS39-208ENST00000564994 MSH6P52701 1360 aa16.28■□□□□ 0.2
VPS39-208ENST00000564994 XRN1Q8IZH2 1706 aaKnown RBP16.27■□□□□ 0.19
VPS39-208ENST00000564994 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.26■□□□□ 0.19
VPS39-208ENST00000564994 AMOTL2Q9Y2J4 779 aa16.26■□□□□ 0.19
VPS39-208ENST00000564994 NCOA3Q9Y6Q9 1424 aa16.26■□□□□ 0.19
VPS39-208ENST00000564994 FOXD1Q16676 465 aa16.25■□□□□ 0.19
VPS39-208ENST00000564994 METP08581 1390 aa16.25■□□□□ 0.19
VPS39-208ENST00000564994 SETD1AO15047 1707 aaKnown RBP16.24■□□□□ 0.19
VPS39-208ENST00000564994 PPLO60437 1756 aa16.23■□□□□ 0.19
VPS39-208ENST00000564994 SLAIN2Q9P270 581 aa16.23■□□□□ 0.19
VPS39-208ENST00000564994 MPHOSPH9Q99550 1183 aa16.21■□□□□ 0.19
VPS39-208ENST00000564994 PHLPP1O60346 1717 aa16.2■□□□□ 0.18
VPS39-208ENST00000564994 SOCS7O14512 581 aa16.2■□□□□ 0.18
VPS39-208ENST00000564994 C14orf37Q86TY3 774 aa16.2■□□□□ 0.18
VPS39-208ENST00000564994 C19orf44Q9H6X5 657 aa16.2■□□□□ 0.18
VPS39-208ENST00000564994 SETD5Q9C0A6 1442 aa16.18■□□□□ 0.18
VPS39-208ENST00000564994 RPGRIP1LQ68CZ1 1315 aa16.18■□□□□ 0.18
VPS39-208ENST00000564994 IFT172Q9UG01 1749 aa16.17■□□□□ 0.18
VPS39-208ENST00000564994 VGFO15240 615 aaPredicted RBP16.17■□□□□ 0.18
VPS39-208ENST00000564994 CADPS2Q86UW7 1296 aa16.17■□□□□ 0.18
VPS39-208ENST00000564994 NALCNQ8IZF0 1738 aa16.16■□□□□ 0.18
VPS39-208ENST00000564994 COL16A1Q07092 1604 aaPredicted RBP16.16■□□□□ 0.18
VPS39-208ENST00000564994 ATF3P18847 181 aa16.16■□□□□ 0.18
VPS39-208ENST00000564994 CCDC144AA2RUR9 1427 aa16.16■□□□□ 0.18
VPS39-208ENST00000564994 SPATA31E1Q6ZUB1 1445 aa16.16■□□□□ 0.18
VPS39-208ENST00000564994 PHF23Q9BUL5 403 aaPredicted RBP16.15■□□□□ 0.18
VPS39-208ENST00000564994 DCCP43146 1447 aa16.14■□□□□ 0.17
VPS39-208ENST00000564994 RAB3GAP2Q9H2M9 1393 aa16.13■□□□□ 0.17
VPS39-208ENST00000564994 AHDC1Q5TGY3 1603 aaPredicted RBP16.13■□□□□ 0.17
VPS39-208ENST00000564994 MST1RQ04912 1400 aa16.12■□□□□ 0.17
VPS39-208ENST00000564994 ADGRL3Q9HAR2 1447 aa16.12■□□□□ 0.17
VPS39-208ENST00000564994 RGS17Q9UGC6 210 aaPredicted RBP16.12■□□□□ 0.17
VPS39-208ENST00000564994 ADGRF5Q8IZF2 1346 aa16.12■□□□□ 0.17
VPS39-208ENST00000564994 PTCH1Q13635 1447 aa16.11■□□□□ 0.17
VPS39-208ENST00000564994 RGL3Q3MIN7 710 aa16.11■□□□□ 0.17
VPS39-208ENST00000564994 ROBO2Q9HCK4 1378 aa16.11■□□□□ 0.17
VPS39-208ENST00000564994 PRAG1Q86YV5 1406 aa16.11■□□□□ 0.17
VPS39-208ENST00000564994 BRINP3Q76B58 766 aa16.1■□□□□ 0.17
VPS39-208ENST00000564994 JCADQ9P266 1359 aa16.1■□□□□ 0.17
VPS39-208ENST00000564994 ASXL1Q8IXJ9 1541 aa16.09■□□□□ 0.17
VPS39-208ENST00000564994 ACIN1Q9UKV3 1341 aaKnown RBP16.09■□□□□ 0.17
VPS39-208ENST00000564994 NHSL1Q5SYE7 1610 aa16.08■□□□□ 0.17
VPS39-208ENST00000564994 ANKRD30BQ9BXX2 1392 aa16.07■□□□□ 0.16
VPS39-208ENST00000564994 SHPRHQ149N8 1683 aa16.07■□□□□ 0.16
VPS39-208ENST00000564994 PIK3C2GO75747 1445 aa16.05■□□□□ 0.16
VPS39-208ENST00000564994 LRP6O75581 1613 aa16.05■□□□□ 0.16
VPS39-208ENST00000564994 C1orf167Q5SNV9 1468 aa16.03■□□□□ 0.16
VPS39-208ENST00000564994 KNDC1Q76NI1 1749 aa16.03■□□□□ 0.16
VPS39-208ENST00000564994 DDX17Q92841 729 aaKnown RBP16.03■□□□□ 0.16
VPS39-208ENST00000564994 TMEM132EQ6IEE7 984 aa16.02■□□□□ 0.16
VPS39-208ENST00000564994 POTEAQ6S8J7 498 aa16.02■□□□□ 0.16
VPS39-208ENST00000564994 NRXN1Q9ULB1 1477 aa16.02■□□□□ 0.15
VPS39-208ENST00000564994 TECPR2O15040 1411 aa16.02■□□□□ 0.15
VPS39-208ENST00000564994 SPATA31A6Q5VVP1 1343 aa16.01■□□□□ 0.15
VPS39-208ENST00000564994 LAMC1P11047 1609 aa16.01■□□□□ 0.15
VPS39-208ENST00000564994 LRPPRCP42704 1394 aaKnown RBP16■□□□□ 0.15
VPS39-208ENST00000564994 MYOM2P54296 1465 aa16■□□□□ 0.15
VPS39-208ENST00000564994 STK26Q9P289 416 aa16■□□□□ 0.15
VPS39-208ENST00000564994 CDC42BPGQ6DT37 1551 aa16■□□□□ 0.15
VPS39-208ENST00000564994 WAPLQ7Z5K2 1190 aa15.99■□□□□ 0.15
VPS39-208ENST00000564994 ORAI2Q96SN7 254 aa15.99■□□□□ 0.15
VPS39-208ENST00000564994 ABCC11Q96J66 1382 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms