RNA–Protein interactions for RNA: ENST00000564642.1

SYNGR3-204, Transcript of synaptogyrin 3, humanhuman

TSL 2

Gene SYNGR3, Length 752 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGR3-204ENST00000564642 PPP1R15AO75807 674 aaPredicted RBP27.43■■□□□ 1.98
SYNGR3-204ENST00000564642 RIMS2Q9UQ26 1411 aa27.42■■□□□ 1.98
SYNGR3-204ENST00000564642 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.41■■□□□ 1.98
SYNGR3-204ENST00000564642 ZFYVE9O95405 1425 aa27.4■■□□□ 1.98
SYNGR3-204ENST00000564642 STRCP1A6NGW2 1772 aa27.39■■□□□ 1.98
SYNGR3-204ENST00000564642 UBAP1LF5GYI3 381 aa27.38■■□□□ 1.97
SYNGR3-204ENST00000564642 SLC26A8Q96RN1 970 aa27.38■■□□□ 1.97
SYNGR3-204ENST00000564642 SENP3Q9H4L4 574 aaPredicted RBP27.36■■□□□ 1.97
SYNGR3-204ENST00000564642 TRPM2O94759 1503 aa27.35■■□□□ 1.97
SYNGR3-204ENST00000564642 ACIN1Q9UKV3 1341 aaKnown RBP27.35■■□□□ 1.97
SYNGR3-204ENST00000564642 PLEKHG1Q9ULL1 1385 aa27.35■■□□□ 1.97
SYNGR3-204ENST00000564642 SETD5Q9C0A6 1442 aa27.34■■□□□ 1.97
SYNGR3-204ENST00000564642 ZNF326Q5BKZ1 582 aaKnown RBP27.34■■□□□ 1.97
SYNGR3-204ENST00000564642 NUTM2DQ5VT03 806 aaPredicted RBP27.34■■□□□ 1.97
SYNGR3-204ENST00000564642 CLTCL1P53675 1640 aa27.33■■□□□ 1.97
SYNGR3-204ENST00000564642 KIF1BO60333 1816 aa27.32■■□□□ 1.96
SYNGR3-204ENST00000564642 LRRC7Q96NW7 1537 aa27.31■■□□□ 1.96
SYNGR3-204ENST00000564642 TOM1O60784 492 aa27.3■■□□□ 1.96
SYNGR3-204ENST00000564642 MPHOSPH9Q99550 1183 aa27.3■■□□□ 1.96
SYNGR3-204ENST00000564642 KCNA6P17658 529 aa27.29■■□□□ 1.96
SYNGR3-204ENST00000564642 FOXD1Q16676 465 aa27.27■■□□□ 1.96
SYNGR3-204ENST00000564642 TBX22Q9Y458 520 aa27.26■■□□□ 1.95
SYNGR3-204ENST00000564642 RAB3GAP2Q9H2M9 1393 aa27.23■■□□□ 1.95
SYNGR3-204ENST00000564642 SCAF1Q9H7N4 1312 aaKnown RBP27.23■■□□□ 1.95
SYNGR3-204ENST00000564642 PROSER2Q86WR7 435 aaPredicted RBP27.22■■□□□ 1.95
SYNGR3-204ENST00000564642 PIP4K2BP78356 416 aa27.21■■□□□ 1.95
SYNGR3-204ENST00000564642 CHD2O14647 1828 aaKnown RBP27.2■■□□□ 1.95
SYNGR3-204ENST00000564642 DIP2AQ14689 1571 aa27.19■■□□□ 1.94
SYNGR3-204ENST00000564642 ADAMTS13Q76LX8 1427 aa27.19■■□□□ 1.94
SYNGR3-204ENST00000564642 XIRP1Q702N8 1843 aaKnown RBP27.19■■□□□ 1.94
SYNGR3-204ENST00000564642 NWD1Q149M9 1564 aa27.18■■□□□ 1.94
SYNGR3-204ENST00000564642 CCDC144AA2RUR9 1427 aa27.16■■□□□ 1.94
SYNGR3-204ENST00000564642 NEXMIFQ5QGS0 1516 aa27.16■■□□□ 1.94
SYNGR3-204ENST00000564642 NKTRP30414 1462 aaKnown RBP27.16■■□□□ 1.94
SYNGR3-204ENST00000564642 TMEM94Q12767 1356 aa27.15■■□□□ 1.94
SYNGR3-204ENST00000564642 PIK3R4Q99570 1358 aa27.14■■□□□ 1.94
SYNGR3-204ENST00000564642 RPGRIP1LQ68CZ1 1315 aa27.14■■□□□ 1.93
SYNGR3-204ENST00000564642 VGFO15240 615 aaPredicted RBP27.13■■□□□ 1.93
SYNGR3-204ENST00000564642 RBM33Q96EV2 1170 aaKnown RBP27.13■■□□□ 1.93
SYNGR3-204ENST00000564642 MED1Q15648 1581 aaPredicted RBP27.13■■□□□ 1.93
SYNGR3-204ENST00000564642 SETBP1Q9Y6X0 1596 aa27.12■■□□□ 1.93
SYNGR3-204ENST00000564642 ALKQ9UM73 1620 aa27.1■■□□□ 1.93
SYNGR3-204ENST00000564642 NRXN3Q9Y4C0 1643 aa27.1■■□□□ 1.93
SYNGR3-204ENST00000564642 HRCP23327 699 aa27.1■■□□□ 1.93
SYNGR3-204ENST00000564642 AMOTL2Q9Y2J4 779 aa27.08■■□□□ 1.93
SYNGR3-204ENST00000564642 RGL3Q3MIN7 710 aa27.07■■□□□ 1.92
SYNGR3-204ENST00000564642 PPLO60437 1756 aa27.07■■□□□ 1.92
SYNGR3-204ENST00000564642 MSH6P52701 1360 aa27.05■■□□□ 1.92
SYNGR3-204ENST00000564642 HSPA1LP34931 641 aa27.03■■□□□ 1.92
SYNGR3-204ENST00000564642 C14orf37Q86TY3 774 aa27.03■■□□□ 1.92
SYNGR3-204ENST00000564642 PTPRUQ92729 1446 aa27.03■■□□□ 1.92
SYNGR3-204ENST00000564642 NCOA3Q9Y6Q9 1424 aa27.01■■□□□ 1.91
SYNGR3-204ENST00000564642 METP08581 1390 aa27.01■■□□□ 1.91
SYNGR3-204ENST00000564642 SPATA31E1Q6ZUB1 1445 aa27■■□□□ 1.91
SYNGR3-204ENST00000564642 ANKRD30BQ9BXX2 1392 aa26.97■■□□□ 1.91
SYNGR3-204ENST00000564642 XRN1Q8IZH2 1706 aaKnown RBP26.96■■□□□ 1.91
SYNGR3-204ENST00000564642 PHF23Q9BUL5 403 aaPredicted RBP26.95■■□□□ 1.9
SYNGR3-204ENST00000564642 IFT172Q9UG01 1749 aa26.95■■□□□ 1.9
SYNGR3-204ENST00000564642 C19orf44Q9H6X5 657 aa26.94■■□□□ 1.9
SYNGR3-204ENST00000564642 ADGRF5Q8IZF2 1346 aa26.93■■□□□ 1.9
SYNGR3-204ENST00000564642 FAM135BQ49AJ0 1406 aa26.92■■□□□ 1.9
SYNGR3-204ENST00000564642 SLAIN2Q9P270 581 aa26.92■■□□□ 1.9
SYNGR3-204ENST00000564642 SETD1AO15047 1707 aaKnown RBP26.92■■□□□ 1.9
SYNGR3-204ENST00000564642 ATF3P18847 181 aa26.91■■□□□ 1.9
SYNGR3-204ENST00000564642 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.9■■□□□ 1.9
SYNGR3-204ENST00000564642 CADPS2Q86UW7 1296 aa26.9■■□□□ 1.9
SYNGR3-204ENST00000564642 ROBO1Q9Y6N7 1651 aa26.88■■□□□ 1.89
SYNGR3-204ENST00000564642 PIK3C2GO75747 1445 aa26.82■■□□□ 1.88
SYNGR3-204ENST00000564642 PTCH1Q13635 1447 aa26.81■■□□□ 1.88
SYNGR3-204ENST00000564642 DCCP43146 1447 aa26.8■■□□□ 1.88
SYNGR3-204ENST00000564642 ROBO2Q9HCK4 1378 aa26.79■■□□□ 1.88
SYNGR3-204ENST00000564642 MYOM2P54296 1465 aa26.79■■□□□ 1.88
SYNGR3-204ENST00000564642 STK26Q9P289 416 aa26.78■■□□□ 1.88
SYNGR3-204ENST00000564642 ADGRL3Q9HAR2 1447 aa26.78■■□□□ 1.88
SYNGR3-204ENST00000564642 TMEM132EQ6IEE7 984 aa26.77■■□□□ 1.88
SYNGR3-204ENST00000564642 NALCNQ8IZF0 1738 aa26.76■■□□□ 1.88
SYNGR3-204ENST00000564642 PRAG1Q86YV5 1406 aa26.76■■□□□ 1.87
SYNGR3-204ENST00000564642 DCAF11Q8TEB1 546 aa26.76■■□□□ 1.87
SYNGR3-204ENST00000564642 C14orf93Q9H972 538 aaKnown RBP26.76■■□□□ 1.87
SYNGR3-204ENST00000564642 KDM2AQ9Y2K7 1162 aa26.76■■□□□ 1.87
SYNGR3-204ENST00000564642 NRXN1Q9ULB1 1477 aa26.74■■□□□ 1.87
SYNGR3-204ENST00000564642 PHLPP1O60346 1717 aa26.74■■□□□ 1.87
SYNGR3-204ENST00000564642 LRPPRCP42704 1394 aaKnown RBP26.73■■□□□ 1.87
SYNGR3-204ENST00000564642 CFAP70Q5T0N1 1121 aa26.73■■□□□ 1.87
SYNGR3-204ENST00000564642 STAC3Q96MF2 364 aa26.73■■□□□ 1.87
SYNGR3-204ENST00000564642 LAMC1P11047 1609 aa26.72■■□□□ 1.87
SYNGR3-204ENST00000564642 ABCC11Q96J66 1382 aa26.71■■□□□ 1.87
SYNGR3-204ENST00000564642 MST1RQ04912 1400 aa26.7■■□□□ 1.86
SYNGR3-204ENST00000564642 DHX57Q6P158 1386 aaKnown RBP26.7■■□□□ 1.86
SYNGR3-204ENST00000564642 ASXL1Q8IXJ9 1541 aa26.7■■□□□ 1.86
SYNGR3-204ENST00000564642 TRIM26Q12899 539 aaPredicted RBP26.69■■□□□ 1.86
SYNGR3-204ENST00000564642 BRINP3Q76B58 766 aa26.69■■□□□ 1.86
SYNGR3-204ENST00000564642 YTHDC2Q9H6S0 1430 aaKnown RBP26.69■■□□□ 1.86
SYNGR3-204ENST00000564642 KNDC1Q76NI1 1749 aa26.68■■□□□ 1.86
SYNGR3-204ENST00000564642 TECPR2O15040 1411 aa26.68■■□□□ 1.86
SYNGR3-204ENST00000564642 WAPLQ7Z5K2 1190 aa26.67■■□□□ 1.86
SYNGR3-204ENST00000564642 SIRT1Q96EB6 747 aa26.63■■□□□ 1.85
SYNGR3-204ENST00000564642 AHDC1Q5TGY3 1603 aaPredicted RBP26.63■■□□□ 1.85
SYNGR3-204ENST00000564642 RGS17Q9UGC6 210 aaPredicted RBP26.62■■□□□ 1.85
SYNGR3-204ENST00000564642 C1orf167Q5SNV9 1468 aa26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms