RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 MAP2K5Q13163 448 aa13.36□□□□□ -0.27
SMG1-209ENST00000563836 BARGINQ6ZT62 677 aa13.36□□□□□ -0.27
SMG1-209ENST00000563836 SEPT9Q9UHD8 586 aaPredicted RBP13.36□□□□□ -0.27
SMG1-209ENST00000563836 SMAPO00193 183 aa13.35□□□□□ -0.27
SMG1-209ENST00000563836 EYA1Q99502 592 aa13.35□□□□□ -0.27
SMG1-209ENST00000563836 NESP48681 1621 aa13.35□□□□□ -0.27
SMG1-209ENST00000563836 FAM98CQ17RN3 349 aaKnown RBP13.34□□□□□ -0.27
SMG1-209ENST00000563836 MYT1LQ9UL68 1186 aa13.33□□□□□ -0.28
SMG1-209ENST00000563836 MINK1Q8N4C8 1332 aaPredicted RBP13.33□□□□□ -0.28
SMG1-209ENST00000563836 FAM161AQ3B820 660 aa13.32□□□□□ -0.28
SMG1-209ENST00000563836 TOP2BQ02880 1626 aa13.31□□□□□ -0.28
SMG1-209ENST00000563836 BIVM-ERCC5R4GMW8 1640 aa13.31□□□□□ -0.28
SMG1-209ENST00000563836 OATP04181 439 aa13.31□□□□□ -0.28
SMG1-209ENST00000563836 RBM46Q8TBY0 533 aaKnown RBP13.31□□□□□ -0.28
SMG1-209ENST00000563836 IRF6O14896 467 aa13.3□□□□□ -0.28
SMG1-209ENST00000563836 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
SMG1-209ENST00000563836 MMRN1Q13201 1228 aa13.29□□□□□ -0.28
SMG1-209ENST00000563836 METTL3Q86U44 580 aaKnown RBP13.29□□□□□ -0.28
SMG1-209ENST00000563836 PXYLP1Q8TE99 480 aa13.29□□□□□ -0.28
SMG1-209ENST00000563836 ZFRQ96KR1 1074 aaKnown RBP13.29□□□□□ -0.28
SMG1-209ENST00000563836 SYNJ1O43426 1573 aa13.28□□□□□ -0.28
SMG1-209ENST00000563836 KIF21AQ7Z4S6 1674 aa13.28□□□□□ -0.28
SMG1-209ENST00000563836 GOLGA8CPA6NN73 597 aa13.27□□□□□ -0.29
SMG1-209ENST00000563836 DNMBPQ6XZF7 1577 aa13.26□□□□□ -0.29
SMG1-209ENST00000563836 KRI1Q8N9T8 703 aaKnown RBP13.26□□□□□ -0.29
SMG1-209ENST00000563836 CCDC102AQ96A19 550 aa13.26□□□□□ -0.29
SMG1-209ENST00000563836 EEA1Q15075 1411 aa13.25□□□□□ -0.29
SMG1-209ENST00000563836 WNT2BQ93097 391 aa13.25□□□□□ -0.29
SMG1-209ENST00000563836 RNF166Q96A37 237 aaPredicted RBP13.25□□□□□ -0.29
SMG1-209ENST00000563836 RCCD1A6NED2 376 aa13.24□□□□□ -0.29
SMG1-209ENST00000563836 CUX1P39880 1505 aa13.23□□□□□ -0.29
SMG1-209ENST00000563836 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.23□□□□□ -0.29
SMG1-209ENST00000563836 DNAJB2P25686 324 aa13.23□□□□□ -0.29
SMG1-209ENST00000563836 PHOX2BQ99453 314 aa13.23□□□□□ -0.29
SMG1-209ENST00000563836 FAM9AQ8IZU1 332 aaPredicted RBP13.22□□□□□ -0.29
SMG1-209ENST00000563836 ANKK1Q8NFD2 765 aa13.22□□□□□ -0.29
SMG1-209ENST00000563836 KCTD12Q96CX2 325 aaKnown RBP13.22□□□□□ -0.29
SMG1-209ENST00000563836 SAMD7Q7Z3H4 446 aa13.21□□□□□ -0.29
SMG1-209ENST00000563836 TMEM134Q9H6X4 195 aa13.21□□□□□ -0.29
SMG1-209ENST00000563836 MRC2Q9UBG0 1479 aa13.21□□□□□ -0.3
SMG1-209ENST00000563836 TOPBP1Q92547 1522 aa13.19□□□□□ -0.3
SMG1-209ENST00000563836 SOWAHBA6NEL2 793 aa13.19□□□□□ -0.3
SMG1-209ENST00000563836 THSD4Q6ZMP0 1018 aa13.19□□□□□ -0.3
SMG1-209ENST00000563836 SLC24A3Q9HC58 644 aa13.19□□□□□ -0.3
SMG1-209ENST00000563836 TPRNQ4KMQ1 711 aa13.18□□□□□ -0.3
SMG1-209ENST00000563836 SWT1Q5T5J6 900 aaKnown RBP13.18□□□□□ -0.3
SMG1-209ENST00000563836 LRCH3Q96II8 777 aa13.18□□□□□ -0.3
SMG1-209ENST00000563836 HDGFP51858 240 aaKnown RBP13.17□□□□□ -0.3
SMG1-209ENST00000563836 AK7Q96M32 723 aa13.17□□□□□ -0.3
SMG1-209ENST00000563836 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.17□□□□□ -0.3
SMG1-209ENST00000563836 FGD5Q6ZNL6 1462 aa13.16□□□□□ -0.3
SMG1-209ENST00000563836 BCAMP50895 628 aa13.16□□□□□ -0.3
SMG1-209ENST00000563836 KIF27Q86VH2 1401 aa13.15□□□□□ -0.3
SMG1-209ENST00000563836 URB2Q14146 1524 aaKnown RBP13.13□□□□□ -0.31
SMG1-209ENST00000563836 NLRP7Q8WX94 980 aa13.13□□□□□ -0.31
SMG1-209ENST00000563836 DAXXQ9UER7 740 aaPredicted RBP13.13□□□□□ -0.31
SMG1-209ENST00000563836 TRIM66O15016 1216 aa13.12□□□□□ -0.31
SMG1-209ENST00000563836 AMHR2Q16671 573 aa13.12□□□□□ -0.31
SMG1-209ENST00000563836 SLF2Q8IX21 1173 aa13.12□□□□□ -0.31
SMG1-209ENST00000563836 PLSCR2Q9NRY7 297 aa13.12□□□□□ -0.31
SMG1-209ENST00000563836 SOGA1O94964 1423 aa13.12□□□□□ -0.31
SMG1-209ENST00000563836 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
SMG1-209ENST00000563836 WDR62O43379 1518 aa13.1□□□□□ -0.31
SMG1-209ENST00000563836 TSR3Q9UJK0 312 aaKnown RBP13.1□□□□□ -0.31
SMG1-209ENST00000563836 SLC4A3P48751 1232 aa13.09□□□□□ -0.31
SMG1-209ENST00000563836 TMUB1Q9BVT8 246 aa13.09□□□□□ -0.31
SMG1-209ENST00000563836 HCSTQ9UBK5 93 aa13.09□□□□□ -0.31
SMG1-209ENST00000563836 HPS5Q9UPZ3 1129 aa13.09□□□□□ -0.31
SMG1-209ENST00000563836 CUX2O14529 1486 aa13.09□□□□□ -0.31
SMG1-209ENST00000563836 MDM2Q00987 491 aaPredicted RBP13.08□□□□□ -0.32
SMG1-209ENST00000563836 PTPN5P54829 565 aa13.07□□□□□ -0.32
SMG1-209ENST00000563836 RNF40O75150 1001 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 CLCN1P35523 988 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 PPP4CP60510 307 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 GPCPD1Q9NPB8 672 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 WBP1LQ9NX94 342 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 ABCA10Q8WWZ4 1543 aa13.06□□□□□ -0.32
SMG1-209ENST00000563836 THOC2Q8NI27 1593 aaKnown RBP13.06□□□□□ -0.32
SMG1-209ENST00000563836 NECTIN2Q92692 538 aa13.05□□□□□ -0.32
SMG1-209ENST00000563836 IFT140Q96RY7 1462 aa13.04□□□□□ -0.32
SMG1-209ENST00000563836 NYAP1Q6ZVC0 841 aa13.04□□□□□ -0.32
SMG1-209ENST00000563836 REPIN1Q9BWE0 567 aaKnown RBP13.04□□□□□ -0.32
SMG1-209ENST00000563836 SLC10A3P09131 477 aa13.03□□□□□ -0.32
SMG1-209ENST00000563836 PRKCSHP14314 528 aaPredicted RBP13.03□□□□□ -0.32
SMG1-209ENST00000563836 PDE4DQ08499 809 aa13.03□□□□□ -0.32
SMG1-209ENST00000563836 SULF1Q8IWU6 871 aa13.03□□□□□ -0.32
SMG1-209ENST00000563836 RAD54L2Q9Y4B4 1467 aa13.03□□□□□ -0.32
SMG1-209ENST00000563836 UBTFP17480 764 aaKnown RBP13.02□□□□□ -0.33
SMG1-209ENST00000563836 GOLGA3Q08378 1498 aa13.02□□□□□ -0.33
SMG1-209ENST00000563836 RUSC2Q8N2Y8 1516 aa13.02□□□□□ -0.33
SMG1-209ENST00000563836 WDR97A6NE52 1622 aa13.02□□□□□ -0.33
SMG1-209ENST00000563836 TTLL12Q14166 644 aaPredicted RBP13.01□□□□□ -0.33
SMG1-209ENST00000563836 PARP9Q8IXQ6 854 aa13.01□□□□□ -0.33
SMG1-209ENST00000563836 KIF21BO75037 1637 aa13.01□□□□□ -0.33
SMG1-209ENST00000563836 LOC105371045A0A1W2PR82 267 aa13□□□□□ -0.33
SMG1-209ENST00000563836 DDX11L8A8MPP1 907 aa13□□□□□ -0.33
SMG1-209ENST00000563836 RSPH4AQ5TD94 716 aa13□□□□□ -0.33
SMG1-209ENST00000563836 FAM217BQ9NTX9 383 aaPredicted RBP13□□□□□ -0.33
SMG1-209ENST00000563836 GAPVD1Q14C86 1478 aa12.98□□□□□ -0.33
SMG1-209ENST00000563836 CUL7Q14999 1698 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms