RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 AEBP2Q6ZN18 517 aaPredicted RBP31.44■■■□□ 2.62
SMG1-209ENST00000563836 CHIC1Q5VXU3 224 aa30.68■■■□□ 2.5
SMG1-209ENST00000563836 PHF23Q9BUL5 403 aaPredicted RBP26.99■■□□□ 1.91
SMG1-209ENST00000563836 SENP3Q9H4L4 574 aaPredicted RBP26.69■■□□□ 1.86
SMG1-209ENST00000563836 PLPPR3Q6T4P5 718 aa24.9■■□□□ 1.58
SMG1-209ENST00000563836 FOXD1Q16676 465 aa24.76■■□□□ 1.55
SMG1-209ENST00000563836 PPP6R1Q9UPN7 881 aa23.81■■□□□ 1.4
SMG1-209ENST00000563836 ADRA2BP18089 450 aa23.76■■□□□ 1.39
SMG1-209ENST00000563836 PIAS4Q8N2W9 510 aaPredicted RBP23.33■■□□□ 1.33
SMG1-209ENST00000563836 MSH5O43196 834 aa22.86■■□□□ 1.25
SMG1-209ENST00000563836 PPP4R3CPQ6ZMV5 832 aa21.92■■□□□ 1.1
SMG1-209ENST00000563836 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
SMG1-209ENST00000563836 MAPK8IP2Q13387 824 aaPredicted RBP21.57■■□□□ 1.04
SMG1-209ENST00000563836 KCNA4P22459 653 aa21.37■■□□□ 1.01
SMG1-209ENST00000563836 NCBP3Q53F19 620 aaKnown RBP21.33■■□□□ 1.01
SMG1-209ENST00000563836 CNKSR2Q8WXI2 1034 aa21.33■■□□□ 1.01
SMG1-209ENST00000563836 DMRT2Q9Y5R5 561 aa21.31■■□□□ 1
SMG1-209ENST00000563836 NPM3O75607 178 aaKnown RBP21.04■□□□□ 0.96
SMG1-209ENST00000563836 RNF216Q9NWF9 866 aaPredicted RBP20.93■□□□□ 0.94
SMG1-209ENST00000563836 HOXD11P31277 338 aaPredicted RBP20.87■□□□□ 0.93
SMG1-209ENST00000563836 POTEDQ86YR6 584 aa20.86■□□□□ 0.93
SMG1-209ENST00000563836 DNAJC5BQ9UF47 199 aa20.51■□□□□ 0.87
SMG1-209ENST00000563836 SLC4A1APQ9BWU0 796 aaKnown RBP20.33■□□□□ 0.85
SMG1-209ENST00000563836 DCAF8L1A6NGE4 600 aa20.3■□□□□ 0.84
SMG1-209ENST00000563836 SLC4A2P04920 1241 aa19.88■□□□□ 0.77
SMG1-209ENST00000563836 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.83■□□□□ 0.77
SMG1-209ENST00000563836 FOXD4L1Q9NU39 408 aa19.69■□□□□ 0.74
SMG1-209ENST00000563836 ZBTB22O15209 634 aa19.68■□□□□ 0.74
SMG1-209ENST00000563836 EHMT2Q96KQ7 1210 aa19.68■□□□□ 0.74
SMG1-209ENST00000563836 RNF39Q9H2S5 420 aa19.59■□□□□ 0.73
SMG1-209ENST00000563836 CSRNP3Q8WYN3 585 aa19.54■□□□□ 0.72
SMG1-209ENST00000563836 U3KPZ7 1027 aaPredicted RBP19.53■□□□□ 0.72
SMG1-209ENST00000563836 MYCNP04198 464 aaPredicted RBP19.44■□□□□ 0.7
SMG1-209ENST00000563836 C1QBPQ07021 282 aaKnown RBP19.36■□□□□ 0.69
SMG1-209ENST00000563836 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.28■□□□□ 0.68
SMG1-209ENST00000563836 HNRNPUL2Q1KMD3 747 aaKnown RBP19.28■□□□□ 0.68
SMG1-209ENST00000563836 SAMD1Q6SPF0 538 aaPredicted RBP19.21■□□□□ 0.67
SMG1-209ENST00000563836 APLP2Q06481 763 aa19.07■□□□□ 0.64
SMG1-209ENST00000563836 CACNB1Q02641 598 aaPredicted RBP19.06■□□□□ 0.64
SMG1-209ENST00000563836 ATXN8OSP0DMR3 200 aa19.04■□□□□ 0.64
SMG1-209ENST00000563836 SPINK5Q9NQ38 1064 aaPredicted RBP18.98■□□□□ 0.63
SMG1-209ENST00000563836 ATF5Q9Y2D1 282 aaPredicted RBP18.91■□□□□ 0.62
SMG1-209ENST00000563836 CAPN15O75808 1086 aa18.88■□□□□ 0.61
SMG1-209ENST00000563836 ZNF219Q9P2Y4 722 aaPredicted RBP18.82■□□□□ 0.6
SMG1-209ENST00000563836 TRHP20396 242 aaPredicted RBP18.78■□□□□ 0.6
SMG1-209ENST00000563836 DSG3P32926 999 aa18.63■□□□□ 0.57
SMG1-209ENST00000563836 ABCB7O75027 752 aa18.52■□□□□ 0.56
SMG1-209ENST00000563836 POLA2Q14181 598 aa18.5■□□□□ 0.55
SMG1-209ENST00000563836 NISCHQ9Y2I1 1504 aa18.38■□□□□ 0.53
SMG1-209ENST00000563836 ZBTB12Q9Y330 459 aaPredicted RBP18.21■□□□□ 0.51
SMG1-209ENST00000563836 FBLN2P98095 1184 aa18.1■□□□□ 0.49
SMG1-209ENST00000563836 MKRN4PQ13434 485 aaPredicted RBP18.1■□□□□ 0.49
SMG1-209ENST00000563836 OSCARQ8IYS5 282 aa17.87■□□□□ 0.45
SMG1-209ENST00000563836 RBM42Q9BTD8 480 aaKnown RBP17.74■□□□□ 0.43
SMG1-209ENST00000563836 SPDYE2BA6NHP3 402 aa17.73■□□□□ 0.43
SMG1-209ENST00000563836 SPDYE6P0CI01 402 aa17.73■□□□□ 0.43
SMG1-209ENST00000563836 SPDYE2Q495Y8 402 aa17.73■□□□□ 0.43
SMG1-209ENST00000563836 SPDYE4A6NLX3 237 aa17.66■□□□□ 0.42
SMG1-209ENST00000563836 FKBP8Q14318 412 aa17.63■□□□□ 0.41
SMG1-209ENST00000563836 ZNF692Q9BU19 519 aaPredicted RBP17.62■□□□□ 0.41
SMG1-209ENST00000563836 SSUH2Q9Y2M2 353 aa17.6■□□□□ 0.41
SMG1-209ENST00000563836 AKT1S1Q96B36 256 aa17.53■□□□□ 0.4
SMG1-209ENST00000563836 PROM2Q8N271 834 aa17.43■□□□□ 0.38
SMG1-209ENST00000563836 PABPN1Q86U42 306 aaKnown RBP eCLIP17.39■□□□□ 0.37
SMG1-209ENST00000563836 REM2Q8IYK8 340 aaPredicted RBP17.34■□□□□ 0.37
SMG1-209ENST00000563836 SPDYE1Q8NFV5 336 aaPredicted RBP17.2■□□□□ 0.34
SMG1-209ENST00000563836 PITPNM1O00562 1244 aa17.14■□□□□ 0.33
SMG1-209ENST00000563836 STAG3Q9UJ98 1225 aa17.11■□□□□ 0.33
SMG1-209ENST00000563836 CLEC11AQ9Y240 323 aa17.08■□□□□ 0.32
SMG1-209ENST00000563836 FBXO3Q9UK99 471 aa17.04■□□□□ 0.32
SMG1-209ENST00000563836 CHRDL2Q6WN34 429 aa17■□□□□ 0.31
SMG1-209ENST00000563836 PRR29P0C7W0 189 aa16.94■□□□□ 0.3
SMG1-209ENST00000563836 FXR2P51116 673 aaKnown RBP eCLIP16.86■□□□□ 0.29
SMG1-209ENST00000563836 VASPP50552 380 aaPredicted RBP16.8■□□□□ 0.28
SMG1-209ENST00000563836 PIP4P2Q8N4L2 257 aa16.79■□□□□ 0.28
SMG1-209ENST00000563836 CREBZFQ9NS37 354 aa16.75■□□□□ 0.27
SMG1-209ENST00000563836 MIER1Q8N108 512 aa16.72■□□□□ 0.27
SMG1-209ENST00000563836 PRKAR2AP13861 404 aaKnown RBP16.7■□□□□ 0.26
SMG1-209ENST00000563836 PLCD3Q8N3E9 789 aa16.7■□□□□ 0.26
SMG1-209ENST00000563836 CHADLQ6NUI6 762 aa16.68■□□□□ 0.26
SMG1-209ENST00000563836 PLEKHG5O94827 1062 aa16.65■□□□□ 0.26
SMG1-209ENST00000563836 MNX1P50219 401 aaPredicted RBP16.59■□□□□ 0.25
SMG1-209ENST00000563836 IFNLR1Q8IU57 520 aaPredicted RBP16.58■□□□□ 0.24
SMG1-209ENST00000563836 ZBTB47Q9UFB7 747 aaPredicted RBP16.54■□□□□ 0.24
SMG1-209ENST00000563836 FARP1Q9Y4F1 1045 aaPredicted RBP16.54■□□□□ 0.24
SMG1-209ENST00000563836 POTEHQ6S545 545 aa16.51■□□□□ 0.23
SMG1-209ENST00000563836 KLHL34Q8N239 644 aa16.48■□□□□ 0.23
SMG1-209ENST00000563836 NPM1P06748 294 aaKnown RBP eCLIP16.46■□□□□ 0.23
SMG1-209ENST00000563836 SPOCK2Q92563 424 aa16.38■□□□□ 0.21
SMG1-209ENST00000563836 NUBP1P53384 320 aa16.35■□□□□ 0.21
SMG1-209ENST00000563836 C19orf67A6NJJ6 358 aa16.27■□□□□ 0.2
SMG1-209ENST00000563836 RASEFQ8IZ41 740 aa16.26■□□□□ 0.19
SMG1-209ENST00000563836 HAX1O00165 279 aa16.22■□□□□ 0.19
SMG1-209ENST00000563836 CD44P16070 742 aaKnown RBP16.22■□□□□ 0.19
SMG1-209ENST00000563836 FAM212AQ96EL1 285 aa16.19■□□□□ 0.18
SMG1-209ENST00000563836 CCDC180Q9P1Z9 1646 aa16.19■□□□□ 0.18
SMG1-209ENST00000563836 PAK3O75914 559 aaPredicted RBP16.16■□□□□ 0.18
SMG1-209ENST00000563836 TSPYL2Q9H2G4 693 aaPredicted RBP16.16■□□□□ 0.18
SMG1-209ENST00000563836 GSE1Q14687 1217 aa16.14■□□□□ 0.17
SMG1-209ENST00000563836 DCAF8Q5TAQ9 597 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms