RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 NUP155O75694 1391 aa17.14■□□□□ 0.33
GABPB1-210ENST00000560825 SLC26A8Q96RN1 970 aa17.13■□□□□ 0.33
GABPB1-210ENST00000560825 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
GABPB1-210ENST00000560825 NAIPQ13075 1403 aa17.13■□□□□ 0.33
GABPB1-210ENST00000560825 CHD2O14647 1828 aaKnown RBP17.13■□□□□ 0.33
GABPB1-210ENST00000560825 RBM33Q96EV2 1170 aaKnown RBP17.13■□□□□ 0.33
GABPB1-210ENST00000560825 HSPA1LP34931 641 aa17.12■□□□□ 0.33
GABPB1-210ENST00000560825 NUTM2DQ5VT03 806 aaPredicted RBP17.12■□□□□ 0.33
GABPB1-210ENST00000560825 ILDR2Q71H61 639 aa17.12■□□□□ 0.33
GABPB1-210ENST00000560825 SCAF1Q9H7N4 1312 aaKnown RBP17.12■□□□□ 0.33
GABPB1-210ENST00000560825 SLC52A1Q9NWF4 448 aa17.11■□□□□ 0.33
GABPB1-210ENST00000560825 EID1Q9Y6B2 187 aa17.11■□□□□ 0.33
GABPB1-210ENST00000560825 CLTCL1P53675 1640 aa17.1■□□□□ 0.33
GABPB1-210ENST00000560825 NWD1Q149M9 1564 aa17.1■□□□□ 0.33
GABPB1-210ENST00000560825 RIMS2Q9UQ26 1411 aa17.1■□□□□ 0.33
GABPB1-210ENST00000560825 DISP3Q9P2K9 1392 aa17.09■□□□□ 0.33
GABPB1-210ENST00000560825 NRXN3Q9Y4C0 1643 aa17.08■□□□□ 0.32
GABPB1-210ENST00000560825 CHGAP10645 457 aaKnown RBP17.06■□□□□ 0.32
GABPB1-210ENST00000560825 TOM1O60784 492 aa17.04■□□□□ 0.32
GABPB1-210ENST00000560825 ADAMTS13Q76LX8 1427 aa17.04■□□□□ 0.32
GABPB1-210ENST00000560825 PLEKHG1Q9ULL1 1385 aa17.04■□□□□ 0.32
GABPB1-210ENST00000560825 TMEM94Q12767 1356 aa17.03■□□□□ 0.32
GABPB1-210ENST00000560825 MED1Q15648 1581 aaPredicted RBP17.03■□□□□ 0.32
GABPB1-210ENST00000560825 HFM1A2PYH4 1435 aa17.02■□□□□ 0.32
GABPB1-210ENST00000560825 ROBO1Q9Y6N7 1651 aa17.01■□□□□ 0.31
GABPB1-210ENST00000560825 TRPM2O94759 1503 aa17.01■□□□□ 0.31
GABPB1-210ENST00000560825 KCNA6P17658 529 aa17.01■□□□□ 0.31
GABPB1-210ENST00000560825 KIF1BO60333 1816 aa17.01■□□□□ 0.31
GABPB1-210ENST00000560825 BCANQ96GW7 911 aa17■□□□□ 0.31
GABPB1-210ENST00000560825 PTPRUQ92729 1446 aa17■□□□□ 0.31
GABPB1-210ENST00000560825 NEXMIFQ5QGS0 1516 aa16.99■□□□□ 0.31
GABPB1-210ENST00000560825 NKTRP30414 1462 aaKnown RBP16.98■□□□□ 0.31
GABPB1-210ENST00000560825 PPP1R15AO75807 674 aaPredicted RBP16.97■□□□□ 0.31
GABPB1-210ENST00000560825 PROSER2Q86WR7 435 aaPredicted RBP16.97■□□□□ 0.31
GABPB1-210ENST00000560825 SETD1AO15047 1707 aaKnown RBP16.97■□□□□ 0.31
GABPB1-210ENST00000560825 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.96■□□□□ 0.31
GABPB1-210ENST00000560825 XRN1Q8IZH2 1706 aaKnown RBP16.96■□□□□ 0.3
GABPB1-210ENST00000560825 DIP2AQ14689 1571 aa16.96■□□□□ 0.3
GABPB1-210ENST00000560825 SETBP1Q9Y6X0 1596 aa16.95■□□□□ 0.3
GABPB1-210ENST00000560825 PPLO60437 1756 aa16.94■□□□□ 0.3
GABPB1-210ENST00000560825 TRIM52Q96A61 297 aa16.93■□□□□ 0.3
GABPB1-210ENST00000560825 TBX22Q9Y458 520 aa16.93■□□□□ 0.3
GABPB1-210ENST00000560825 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.9■□□□□ 0.3
GABPB1-210ENST00000560825 METP08581 1390 aa16.9■□□□□ 0.3
GABPB1-210ENST00000560825 PHLPP1O60346 1717 aa16.9■□□□□ 0.3
GABPB1-210ENST00000560825 ZNF326Q5BKZ1 582 aaKnown RBP16.89■□□□□ 0.29
GABPB1-210ENST00000560825 NALCNQ8IZF0 1738 aa16.89■□□□□ 0.29
GABPB1-210ENST00000560825 FAM135BQ49AJ0 1406 aa16.88■□□□□ 0.29
GABPB1-210ENST00000560825 IFT172Q9UG01 1749 aa16.88■□□□□ 0.29
GABPB1-210ENST00000560825 SLC4A1APQ9BWU0 796 aaKnown RBP16.87■□□□□ 0.29
GABPB1-210ENST00000560825 HDGFP51858 240 aaKnown RBP16.87■□□□□ 0.29
GABPB1-210ENST00000560825 AMOTL2Q9Y2J4 779 aa16.87■□□□□ 0.29
GABPB1-210ENST00000560825 MSH6P52701 1360 aa16.86■□□□□ 0.29
GABPB1-210ENST00000560825 COL16A1Q07092 1604 aaPredicted RBP16.86■□□□□ 0.29
GABPB1-210ENST00000560825 SLAIN2Q9P270 581 aa16.84■□□□□ 0.29
GABPB1-210ENST00000560825 PIK3R4Q99570 1358 aa16.83■□□□□ 0.29
GABPB1-210ENST00000560825 RGS17Q9UGC6 210 aaPredicted RBP16.81■□□□□ 0.28
GABPB1-210ENST00000560825 SOCS7O14512 581 aa16.8■□□□□ 0.28
GABPB1-210ENST00000560825 MPHOSPH9Q99550 1183 aa16.8■□□□□ 0.28
GABPB1-210ENST00000560825 SPATA31E1Q6ZUB1 1445 aa16.8■□□□□ 0.28
GABPB1-210ENST00000560825 NCOA3Q9Y6Q9 1424 aa16.78■□□□□ 0.28
GABPB1-210ENST00000560825 ASXL1Q8IXJ9 1541 aa16.78■□□□□ 0.28
GABPB1-210ENST00000560825 C14orf37Q86TY3 774 aa16.78■□□□□ 0.28
GABPB1-210ENST00000560825 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.28
GABPB1-210ENST00000560825 AHDC1Q5TGY3 1603 aaPredicted RBP16.77■□□□□ 0.28
GABPB1-210ENST00000560825 NHSL1Q5SYE7 1610 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 ADGRF5Q8IZF2 1346 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 RAB3GAP2Q9H2M9 1393 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 ROBO2Q9HCK4 1378 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 C19orf44Q9H6X5 657 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 MST1RQ04912 1400 aa16.76■□□□□ 0.27
GABPB1-210ENST00000560825 LRP6O75581 1613 aa16.75■□□□□ 0.27
GABPB1-210ENST00000560825 RGL3Q3MIN7 710 aa16.74■□□□□ 0.27
GABPB1-210ENST00000560825 CCDC144AA2RUR9 1427 aa16.74■□□□□ 0.27
GABPB1-210ENST00000560825 SHPRHQ149N8 1683 aa16.73■□□□□ 0.27
GABPB1-210ENST00000560825 DDX17Q92841 729 aaKnown RBP16.73■□□□□ 0.27
GABPB1-210ENST00000560825 ADGRL3Q9HAR2 1447 aa16.72■□□□□ 0.27
GABPB1-210ENST00000560825 BRINP3Q76B58 766 aa16.72■□□□□ 0.27
GABPB1-210ENST00000560825 VGFO15240 615 aaPredicted RBP16.7■□□□□ 0.26
GABPB1-210ENST00000560825 ATF3P18847 181 aa16.7■□□□□ 0.26
GABPB1-210ENST00000560825 CADPS2Q86UW7 1296 aa16.7■□□□□ 0.26
GABPB1-210ENST00000560825 DCCP43146 1447 aa16.7■□□□□ 0.26
GABPB1-210ENST00000560825 RPGRIP1LQ68CZ1 1315 aa16.69■□□□□ 0.26
GABPB1-210ENST00000560825 PTCH1Q13635 1447 aa16.69■□□□□ 0.26
GABPB1-210ENST00000560825 KNDC1Q76NI1 1749 aa16.69■□□□□ 0.26
GABPB1-210ENST00000560825 POTEAQ6S8J7 498 aa16.68■□□□□ 0.26
GABPB1-210ENST00000560825 PIK3C2GO75747 1445 aa16.68■□□□□ 0.26
GABPB1-210ENST00000560825 PRAG1Q86YV5 1406 aa16.68■□□□□ 0.26
GABPB1-210ENST00000560825 TMEM132EQ6IEE7 984 aa16.67■□□□□ 0.26
GABPB1-210ENST00000560825 JCADQ9P266 1359 aa16.67■□□□□ 0.26
GABPB1-210ENST00000560825 RGPD8O14715 1765 aaPredicted RBP16.67■□□□□ 0.26
GABPB1-210ENST00000560825 PLEKHH1Q9ULM0 1364 aa16.66■□□□□ 0.26
GABPB1-210ENST00000560825 LAMC1P11047 1609 aa16.66■□□□□ 0.26
GABPB1-210ENST00000560825 C1orf167Q5SNV9 1468 aa16.65■□□□□ 0.26
GABPB1-210ENST00000560825 NRXN1Q9ULB1 1477 aa16.64■□□□□ 0.25
GABPB1-210ENST00000560825 WAPLQ7Z5K2 1190 aa16.63■□□□□ 0.25
GABPB1-210ENST00000560825 ORAI2Q96SN7 254 aa16.63■□□□□ 0.25
GABPB1-210ENST00000560825 STK26Q9P289 416 aa16.63■□□□□ 0.25
GABPB1-210ENST00000560825 ANKRD30BQ9BXX2 1392 aa16.62■□□□□ 0.25
GABPB1-210ENST00000560825 CDC42BPGQ6DT37 1551 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms