RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 HSPA1LP34931 641 aa27.03■■□□□ 1.92
HDDC3-205ENST00000559898 NAIPQ13075 1403 aa27.03■■□□□ 1.92
HDDC3-205ENST00000559898 NUTM2DQ5VT03 806 aaPredicted RBP27.03■■□□□ 1.92
HDDC3-205ENST00000559898 RIMS2Q9UQ26 1411 aa27.03■■□□□ 1.92
HDDC3-205ENST00000559898 DISP3Q9P2K9 1392 aa27.02■■□□□ 1.92
HDDC3-205ENST00000559898 TOM1O60784 492 aa27.02■■□□□ 1.92
HDDC3-205ENST00000559898 RBM33Q96EV2 1170 aaKnown RBP27.02■■□□□ 1.92
HDDC3-205ENST00000559898 SPHKAPQ2M3C7 1700 aa26.99■■□□□ 1.91
HDDC3-205ENST00000559898 ILDR2Q71H61 639 aa26.98■■□□□ 1.91
HDDC3-205ENST00000559898 BCANQ96GW7 911 aa26.95■■□□□ 1.9
HDDC3-205ENST00000559898 KCNA6P17658 529 aa26.94■■□□□ 1.9
HDDC3-205ENST00000559898 PLEKHG1Q9ULL1 1385 aa26.94■■□□□ 1.9
HDDC3-205ENST00000559898 NWD1Q149M9 1564 aa26.93■■□□□ 1.9
HDDC3-205ENST00000559898 TMEM94Q12767 1356 aa26.92■■□□□ 1.9
HDDC3-205ENST00000559898 CHD2O14647 1828 aaKnown RBP26.92■■□□□ 1.9
HDDC3-205ENST00000559898 CLTCL1P53675 1640 aa26.9■■□□□ 1.9
HDDC3-205ENST00000559898 PPP1R15AO75807 674 aaPredicted RBP26.9■■□□□ 1.9
HDDC3-205ENST00000559898 ADAMTS13Q76LX8 1427 aa26.9■■□□□ 1.9
HDDC3-205ENST00000559898 HFM1A2PYH4 1435 aa26.88■■□□□ 1.89
HDDC3-205ENST00000559898 PROSER2Q86WR7 435 aaPredicted RBP26.87■■□□□ 1.89
HDDC3-205ENST00000559898 NRXN3Q9Y4C0 1643 aa26.83■■□□□ 1.89
HDDC3-205ENST00000559898 TRIM52Q96A61 297 aa26.83■■□□□ 1.89
HDDC3-205ENST00000559898 NKTRP30414 1462 aaKnown RBP26.82■■□□□ 1.88
HDDC3-205ENST00000559898 TRPM2O94759 1503 aa26.81■■□□□ 1.88
HDDC3-205ENST00000559898 MED1Q15648 1581 aaPredicted RBP26.81■■□□□ 1.88
HDDC3-205ENST00000559898 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.81■■□□□ 1.88
HDDC3-205ENST00000559898 TBX22Q9Y458 520 aa26.8■■□□□ 1.88
HDDC3-205ENST00000559898 HDGFP51858 240 aaKnown RBP26.79■■□□□ 1.88
HDDC3-205ENST00000559898 PTPRUQ92729 1446 aa26.79■■□□□ 1.88
HDDC3-205ENST00000559898 FOXD1Q16676 465 aa26.77■■□□□ 1.88
HDDC3-205ENST00000559898 NEXMIFQ5QGS0 1516 aa26.76■■□□□ 1.87
HDDC3-205ENST00000559898 ZNF326Q5BKZ1 582 aaKnown RBP26.76■■□□□ 1.87
HDDC3-205ENST00000559898 KIF1BO60333 1816 aa26.76■■□□□ 1.87
HDDC3-205ENST00000559898 ROBO1Q9Y6N7 1651 aa26.76■■□□□ 1.87
HDDC3-205ENST00000559898 DIP2AQ14689 1571 aa26.75■■□□□ 1.87
HDDC3-205ENST00000559898 SLC4A1APQ9BWU0 796 aaKnown RBP26.72■■□□□ 1.87
HDDC3-205ENST00000559898 SETBP1Q9Y6X0 1596 aa26.71■■□□□ 1.87
HDDC3-205ENST00000559898 FAM135BQ49AJ0 1406 aa26.7■■□□□ 1.86
HDDC3-205ENST00000559898 METP08581 1390 aa26.69■■□□□ 1.86
HDDC3-205ENST00000559898 AMOTL2Q9Y2J4 779 aa26.68■■□□□ 1.86
HDDC3-205ENST00000559898 MSH6P52701 1360 aa26.68■■□□□ 1.86
HDDC3-205ENST00000559898 XRN1Q8IZH2 1706 aaKnown RBP26.68■■□□□ 1.86
HDDC3-205ENST00000559898 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.68■■□□□ 1.86
HDDC3-205ENST00000559898 PIK3R4Q99570 1358 aa26.65■■□□□ 1.86
HDDC3-205ENST00000559898 SETD1AO15047 1707 aaKnown RBP26.62■■□□□ 1.85
HDDC3-205ENST00000559898 SLAIN2Q9P270 581 aa26.62■■□□□ 1.85
HDDC3-205ENST00000559898 PPLO60437 1756 aa26.61■■□□□ 1.85
HDDC3-205ENST00000559898 C14orf37Q86TY3 774 aa26.59■■□□□ 1.85
HDDC3-205ENST00000559898 MPHOSPH9Q99550 1183 aa26.58■■□□□ 1.85
HDDC3-205ENST00000559898 PHLPP1O60346 1717 aa26.58■■□□□ 1.85
HDDC3-205ENST00000559898 NCOA3Q9Y6Q9 1424 aa26.57■■□□□ 1.84
HDDC3-205ENST00000559898 SOCS7O14512 581 aa26.57■■□□□ 1.84
HDDC3-205ENST00000559898 C19orf44Q9H6X5 657 aa26.53■■□□□ 1.84
HDDC3-205ENST00000559898 SETD5Q9C0A6 1442 aa26.53■■□□□ 1.84
HDDC3-205ENST00000559898 NALCNQ8IZF0 1738 aa26.52■■□□□ 1.84
HDDC3-205ENST00000559898 RGS17Q9UGC6 210 aaPredicted RBP26.52■■□□□ 1.84
HDDC3-205ENST00000559898 COL16A1Q07092 1604 aaPredicted RBP26.51■■□□□ 1.83
HDDC3-205ENST00000559898 IFT172Q9UG01 1749 aa26.5■■□□□ 1.83
HDDC3-205ENST00000559898 SPATA31E1Q6ZUB1 1445 aa26.49■■□□□ 1.83
HDDC3-205ENST00000559898 RGL3Q3MIN7 710 aa26.49■■□□□ 1.83
HDDC3-205ENST00000559898 PHF23Q9BUL5 403 aaPredicted RBP26.49■■□□□ 1.83
HDDC3-205ENST00000559898 ADGRF5Q8IZF2 1346 aa26.48■■□□□ 1.83
HDDC3-205ENST00000559898 ATF3P18847 181 aa26.48■■□□□ 1.83
HDDC3-205ENST00000559898 CCDC144AA2RUR9 1427 aa26.48■■□□□ 1.83
HDDC3-205ENST00000559898 RAB3GAP2Q9H2M9 1393 aa26.47■■□□□ 1.83
HDDC3-205ENST00000559898 VGFO15240 615 aaPredicted RBP26.47■■□□□ 1.83
HDDC3-205ENST00000559898 CADPS2Q86UW7 1296 aa26.47■■□□□ 1.83
HDDC3-205ENST00000559898 RPGRIP1LQ68CZ1 1315 aa26.46■■□□□ 1.83
HDDC3-205ENST00000559898 ROBO2Q9HCK4 1378 aa26.46■■□□□ 1.83
HDDC3-205ENST00000559898 MST1RQ04912 1400 aa26.45■■□□□ 1.82
HDDC3-205ENST00000559898 BRINP3Q76B58 766 aa26.44■■□□□ 1.82
HDDC3-205ENST00000559898 ADGRL3Q9HAR2 1447 aa26.43■■□□□ 1.82
HDDC3-205ENST00000559898 AHDC1Q5TGY3 1603 aaPredicted RBP26.43■■□□□ 1.82
HDDC3-205ENST00000559898 DCCP43146 1447 aa26.4■■□□□ 1.82
HDDC3-205ENST00000559898 ASXL1Q8IXJ9 1541 aa26.39■■□□□ 1.82
HDDC3-205ENST00000559898 DDX17Q92841 729 aaKnown RBP26.39■■□□□ 1.82
HDDC3-205ENST00000559898 PTCH1Q13635 1447 aa26.38■■□□□ 1.81
HDDC3-205ENST00000559898 JCADQ9P266 1359 aa26.37■■□□□ 1.81
HDDC3-205ENST00000559898 LRP6O75581 1613 aa26.37■■□□□ 1.81
HDDC3-205ENST00000559898 NHSL1Q5SYE7 1610 aa26.36■■□□□ 1.81
HDDC3-205ENST00000559898 POTEAQ6S8J7 498 aa26.35■■□□□ 1.81
HDDC3-205ENST00000559898 PRAG1Q86YV5 1406 aa26.33■■□□□ 1.81
HDDC3-205ENST00000559898 TMEM132EQ6IEE7 984 aa26.33■■□□□ 1.81
HDDC3-205ENST00000559898 SHPRHQ149N8 1683 aa26.32■■□□□ 1.8
HDDC3-205ENST00000559898 PIK3C2GO75747 1445 aa26.31■■□□□ 1.8
HDDC3-205ENST00000559898 STK26Q9P289 416 aa26.31■■□□□ 1.8
HDDC3-205ENST00000559898 C1orf167Q5SNV9 1468 aa26.3■■□□□ 1.8
HDDC3-205ENST00000559898 ANKRD30BQ9BXX2 1392 aa26.3■■□□□ 1.8
HDDC3-205ENST00000559898 PLEKHH1Q9ULM0 1364 aa26.29■■□□□ 1.8
HDDC3-205ENST00000559898 WAPLQ7Z5K2 1190 aa26.28■■□□□ 1.8
HDDC3-205ENST00000559898 ORAI2Q96SN7 254 aa26.27■■□□□ 1.8
HDDC3-205ENST00000559898 KNDC1Q76NI1 1749 aa26.25■■□□□ 1.79
HDDC3-205ENST00000559898 NRXN1Q9ULB1 1477 aa26.24■■□□□ 1.79
HDDC3-205ENST00000559898 LRPPRCP42704 1394 aaKnown RBP26.23■■□□□ 1.79
HDDC3-205ENST00000559898 TECPR2O15040 1411 aa26.22■■□□□ 1.79
HDDC3-205ENST00000559898 CFAP70Q5T0N1 1121 aa26.22■■□□□ 1.79
HDDC3-205ENST00000559898 NUTM2BA6NNL0 878 aaPredicted RBP26.21■■□□□ 1.79
HDDC3-205ENST00000559898 NUTM2EB1AL46 878 aaPredicted RBP26.21■■□□□ 1.79
HDDC3-205ENST00000559898 NUTM2AQ8IVF1 878 aaPredicted RBP26.21■■□□□ 1.79
HDDC3-205ENST00000559898 SPATA31A6Q5VVP1 1343 aa26.2■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms