RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 SLC26A8Q96RN1 970 aa18.73■□□□□ 0.59
PKNOX1-208ENST00000558955 SLC4A1APQ9BWU0 796 aaKnown RBP18.72■□□□□ 0.59
PKNOX1-208ENST00000558955 UBAP1LF5GYI3 381 aa18.71■□□□□ 0.59
PKNOX1-208ENST00000558955 NUTM2DQ5VT03 806 aaPredicted RBP18.71■□□□□ 0.59
PKNOX1-208ENST00000558955 BCANQ96GW7 911 aa18.71■□□□□ 0.59
PKNOX1-208ENST00000558955 PPP1R15AO75807 674 aaPredicted RBP18.7■□□□□ 0.58
PKNOX1-208ENST00000558955 HDGFP51858 240 aaKnown RBP18.7■□□□□ 0.58
PKNOX1-208ENST00000558955 TRPM2O94759 1503 aa18.69■□□□□ 0.58
PKNOX1-208ENST00000558955 LRRC7Q96NW7 1537 aa18.69■□□□□ 0.58
PKNOX1-208ENST00000558955 PLEKHG1Q9ULL1 1385 aa18.68■□□□□ 0.58
PKNOX1-208ENST00000558955 CLTCL1P53675 1640 aa18.68■□□□□ 0.58
PKNOX1-208ENST00000558955 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.68■□□□□ 0.58
PKNOX1-208ENST00000558955 SETD5Q9C0A6 1442 aa18.66■□□□□ 0.58
PKNOX1-208ENST00000558955 ZNF326Q5BKZ1 582 aaKnown RBP18.64■□□□□ 0.57
PKNOX1-208ENST00000558955 MPHOSPH9Q99550 1183 aa18.64■□□□□ 0.57
PKNOX1-208ENST00000558955 KCNA6P17658 529 aa18.63■□□□□ 0.57
PKNOX1-208ENST00000558955 ADAMTS13Q76LX8 1427 aa18.61■□□□□ 0.57
PKNOX1-208ENST00000558955 RAB3GAP2Q9H2M9 1393 aa18.61■□□□□ 0.57
PKNOX1-208ENST00000558955 TOM1O60784 492 aa18.61■□□□□ 0.57
PKNOX1-208ENST00000558955 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 PIP4K2BP78356 416 aa18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 TBX22Q9Y458 520 aa18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 KIF1BO60333 1816 aa18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 XIRP1Q702N8 1843 aaKnown RBP18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 ALKQ9UM73 1620 aa18.6■□□□□ 0.57
PKNOX1-208ENST00000558955 RBM33Q96EV2 1170 aaKnown RBP18.59■□□□□ 0.57
PKNOX1-208ENST00000558955 NWD1Q149M9 1564 aa18.59■□□□□ 0.57
PKNOX1-208ENST00000558955 PROSER2Q86WR7 435 aaPredicted RBP18.58■□□□□ 0.56
PKNOX1-208ENST00000558955 NEXMIFQ5QGS0 1516 aa18.58■□□□□ 0.56
PKNOX1-208ENST00000558955 TMEM94Q12767 1356 aa18.57■□□□□ 0.56
PKNOX1-208ENST00000558955 CHD2O14647 1828 aaKnown RBP18.56■□□□□ 0.56
PKNOX1-208ENST00000558955 DIP2AQ14689 1571 aa18.55■□□□□ 0.56
PKNOX1-208ENST00000558955 NKTRP30414 1462 aaKnown RBP18.55■□□□□ 0.56
PKNOX1-208ENST00000558955 NRXN3Q9Y4C0 1643 aa18.55■□□□□ 0.56
PKNOX1-208ENST00000558955 ACIN1Q9UKV3 1341 aaKnown RBP18.54■□□□□ 0.56
PKNOX1-208ENST00000558955 SETBP1Q9Y6X0 1596 aa18.54■□□□□ 0.56
PKNOX1-208ENST00000558955 CCDC144AA2RUR9 1427 aa18.53■□□□□ 0.56
PKNOX1-208ENST00000558955 PIK3R4Q99570 1358 aa18.52■□□□□ 0.55
PKNOX1-208ENST00000558955 PTPRUQ92729 1446 aa18.51■□□□□ 0.55
PKNOX1-208ENST00000558955 HSPA1LP34931 641 aa18.5■□□□□ 0.55
PKNOX1-208ENST00000558955 RPGRIP1LQ68CZ1 1315 aa18.49■□□□□ 0.55
PKNOX1-208ENST00000558955 VGFO15240 615 aaPredicted RBP18.49■□□□□ 0.55
PKNOX1-208ENST00000558955 RGL3Q3MIN7 710 aa18.49■□□□□ 0.55
PKNOX1-208ENST00000558955 AMOTL2Q9Y2J4 779 aa18.49■□□□□ 0.55
PKNOX1-208ENST00000558955 METP08581 1390 aa18.49■□□□□ 0.55
PKNOX1-208ENST00000558955 SPATA31E1Q6ZUB1 1445 aa18.48■□□□□ 0.55
PKNOX1-208ENST00000558955 PPLO60437 1756 aa18.47■□□□□ 0.55
PKNOX1-208ENST00000558955 HRCP23327 699 aa18.46■□□□□ 0.55
PKNOX1-208ENST00000558955 MSH6P52701 1360 aa18.45■□□□□ 0.54
PKNOX1-208ENST00000558955 XRN1Q8IZH2 1706 aaKnown RBP18.43■□□□□ 0.54
PKNOX1-208ENST00000558955 C14orf37Q86TY3 774 aa18.43■□□□□ 0.54
PKNOX1-208ENST00000558955 ADGRF5Q8IZF2 1346 aa18.43■□□□□ 0.54
PKNOX1-208ENST00000558955 NCOA3Q9Y6Q9 1424 aa18.42■□□□□ 0.54
PKNOX1-208ENST00000558955 SETD1AO15047 1707 aaKnown RBP18.42■□□□□ 0.54
PKNOX1-208ENST00000558955 ANKRD30BQ9BXX2 1392 aa18.41■□□□□ 0.54
PKNOX1-208ENST00000558955 IFT172Q9UG01 1749 aa18.4■□□□□ 0.54
PKNOX1-208ENST00000558955 FAM135BQ49AJ0 1406 aa18.4■□□□□ 0.54
PKNOX1-208ENST00000558955 SLAIN2Q9P270 581 aa18.39■□□□□ 0.53
PKNOX1-208ENST00000558955 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.38■□□□□ 0.53
PKNOX1-208ENST00000558955 C19orf44Q9H6X5 657 aa18.38■□□□□ 0.53
PKNOX1-208ENST00000558955 ROBO1Q9Y6N7 1651 aa18.38■□□□□ 0.53
PKNOX1-208ENST00000558955 POTEDQ86YR6 584 aa18.36■□□□□ 0.53
PKNOX1-208ENST00000558955 DISP3Q9P2K9 1392 aa18.36■□□□□ 0.53
PKNOX1-208ENST00000558955 ADRA2BP18089 450 aa18.35■□□□□ 0.53
PKNOX1-208ENST00000558955 ATF3P18847 181 aa18.35■□□□□ 0.53
PKNOX1-208ENST00000558955 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
PKNOX1-208ENST00000558955 PIK3C2GO75747 1445 aa18.33■□□□□ 0.53
PKNOX1-208ENST00000558955 ROBO2Q9HCK4 1378 aa18.33■□□□□ 0.53
PKNOX1-208ENST00000558955 PTCH1Q13635 1447 aa18.32■□□□□ 0.52
PKNOX1-208ENST00000558955 TMEM132EQ6IEE7 984 aa18.31■□□□□ 0.52
PKNOX1-208ENST00000558955 ASXL1Q8IXJ9 1541 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 NALCNQ8IZF0 1738 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 MYOM2P54296 1465 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 DCCP43146 1447 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 PRAG1Q86YV5 1406 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 ADGRL3Q9HAR2 1447 aa18.3■□□□□ 0.52
PKNOX1-208ENST00000558955 NRXN1Q9ULB1 1477 aa18.29■□□□□ 0.52
PKNOX1-208ENST00000558955 STK26Q9P289 416 aa18.29■□□□□ 0.52
PKNOX1-208ENST00000558955 MED1Q15648 1581 aaPredicted RBP18.28■□□□□ 0.52
PKNOX1-208ENST00000558955 CFAP70Q5T0N1 1121 aa18.27■□□□□ 0.52
PKNOX1-208ENST00000558955 C14orf93Q9H972 538 aaKnown RBP18.27■□□□□ 0.52
PKNOX1-208ENST00000558955 KDM2AQ9Y2K7 1162 aa18.27■□□□□ 0.52
PKNOX1-208ENST00000558955 MST1RQ04912 1400 aa18.26■□□□□ 0.51
PKNOX1-208ENST00000558955 DCAF11Q8TEB1 546 aa18.26■□□□□ 0.51
PKNOX1-208ENST00000558955 LRPPRCP42704 1394 aaKnown RBP18.26■□□□□ 0.51
PKNOX1-208ENST00000558955 BRINP3Q76B58 766 aa18.25■□□□□ 0.51
PKNOX1-208ENST00000558955 PHLPP1O60346 1717 aa18.25■□□□□ 0.51
PKNOX1-208ENST00000558955 WAPLQ7Z5K2 1190 aa18.24■□□□□ 0.51
PKNOX1-208ENST00000558955 DHX57Q6P158 1386 aaKnown RBP18.24■□□□□ 0.51
PKNOX1-208ENST00000558955 ABCC11Q96J66 1382 aa18.24■□□□□ 0.51
PKNOX1-208ENST00000558955 TECPR2O15040 1411 aa18.23■□□□□ 0.51
PKNOX1-208ENST00000558955 YTHDC2Q9H6S0 1430 aaKnown RBP18.23■□□□□ 0.51
PKNOX1-208ENST00000558955 ILDR2Q71H61 639 aa18.23■□□□□ 0.51
PKNOX1-208ENST00000558955 PLEKHH1Q9ULM0 1364 aa18.22■□□□□ 0.51
PKNOX1-208ENST00000558955 KNDC1Q76NI1 1749 aa18.21■□□□□ 0.51
PKNOX1-208ENST00000558955 LAMC1P11047 1609 aa18.21■□□□□ 0.51
PKNOX1-208ENST00000558955 COL16A1Q07092 1604 aaPredicted RBP18.21■□□□□ 0.51
PKNOX1-208ENST00000558955 AHDC1Q5TGY3 1603 aaPredicted RBP18.2■□□□□ 0.5
PKNOX1-208ENST00000558955 C1orf167Q5SNV9 1468 aa18.2■□□□□ 0.5
PKNOX1-208ENST00000558955 TRIM26Q12899 539 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms