RNA–Protein interactions for RNA: ENST00000558879.5

LRRC28-210, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4 BASIC

Gene LRRC28, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-210ENST00000558879 RIMS2Q9UQ26 1411 aa25.89■■□□□ 1.74
LRRC28-210ENST00000558879 CLTCL1P53675 1640 aa25.88■■□□□ 1.73
LRRC28-210ENST00000558879 KIF1BO60333 1816 aa25.88■■□□□ 1.73
LRRC28-210ENST00000558879 TRPM2O94759 1503 aa25.88■■□□□ 1.73
LRRC28-210ENST00000558879 DIP2AQ14689 1571 aa25.87■■□□□ 1.73
LRRC28-210ENST00000558879 NKTRP30414 1462 aaKnown RBP25.86■■□□□ 1.73
LRRC28-210ENST00000558879 PLEKHG1Q9ULL1 1385 aa25.86■■□□□ 1.73
LRRC28-210ENST00000558879 TOM1O60784 492 aa25.83■■□□□ 1.73
LRRC28-210ENST00000558879 NRXN3Q9Y4C0 1643 aa25.83■■□□□ 1.73
LRRC28-210ENST00000558879 ADAMTS13Q76LX8 1427 aa25.78■■□□□ 1.72
LRRC28-210ENST00000558879 SLC26A8Q96RN1 970 aa25.77■■□□□ 1.72
LRRC28-210ENST00000558879 NEXMIFQ5QGS0 1516 aa25.76■■□□□ 1.71
LRRC28-210ENST00000558879 SETBP1Q9Y6X0 1596 aa25.76■■□□□ 1.71
LRRC28-210ENST00000558879 KCNA6P17658 529 aa25.75■■□□□ 1.71
LRRC28-210ENST00000558879 PIP4K2BP78356 416 aa25.73■■□□□ 1.71
LRRC28-210ENST00000558879 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.73■■□□□ 1.71
LRRC28-210ENST00000558879 TMEM94Q12767 1356 aa25.72■■□□□ 1.71
LRRC28-210ENST00000558879 XRN1Q8IZH2 1706 aaKnown RBP25.72■■□□□ 1.71
LRRC28-210ENST00000558879 CHGAP10645 457 aaKnown RBP25.72■■□□□ 1.71
LRRC28-210ENST00000558879 HDGFP51858 240 aaKnown RBP25.72■■□□□ 1.71
LRRC28-210ENST00000558879 PPP1R15AO75807 674 aaPredicted RBP25.71■■□□□ 1.71
LRRC28-210ENST00000558879 SCAF1Q9H7N4 1312 aaKnown RBP25.7■■□□□ 1.71
LRRC28-210ENST00000558879 PPLO60437 1756 aa25.7■■□□□ 1.7
LRRC28-210ENST00000558879 SETD1AO15047 1707 aaKnown RBP25.7■■□□□ 1.7
LRRC28-210ENST00000558879 HSPA1LP34931 641 aa25.69■■□□□ 1.7
LRRC28-210ENST00000558879 ROBO1Q9Y6N7 1651 aa25.68■■□□□ 1.7
LRRC28-210ENST00000558879 MED1Q15648 1581 aaPredicted RBP25.68■■□□□ 1.7
LRRC28-210ENST00000558879 PIK3R4Q99570 1358 aa25.67■■□□□ 1.7
LRRC28-210ENST00000558879 DISP3Q9P2K9 1392 aa25.67■■□□□ 1.7
LRRC28-210ENST00000558879 TBX22Q9Y458 520 aa25.66■■□□□ 1.7
LRRC28-210ENST00000558879 IFT172Q9UG01 1749 aa25.64■■□□□ 1.7
LRRC28-210ENST00000558879 BCANQ96GW7 911 aa25.64■■□□□ 1.7
LRRC28-210ENST00000558879 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.63■■□□□ 1.69
LRRC28-210ENST00000558879 NUTM2DQ5VT03 806 aaPredicted RBP25.63■■□□□ 1.69
LRRC28-210ENST00000558879 SENP3Q9H4L4 574 aaPredicted RBP25.61■■□□□ 1.69
LRRC28-210ENST00000558879 PTPRUQ92729 1446 aa25.61■■□□□ 1.69
LRRC28-210ENST00000558879 NCOA3Q9Y6Q9 1424 aa25.61■■□□□ 1.69
LRRC28-210ENST00000558879 PROSER2Q86WR7 435 aaPredicted RBP25.6■■□□□ 1.69
LRRC28-210ENST00000558879 TRIM52Q96A61 297 aa25.6■■□□□ 1.69
LRRC28-210ENST00000558879 FAM135BQ49AJ0 1406 aa25.6■■□□□ 1.69
LRRC28-210ENST00000558879 SLC4A1APQ9BWU0 796 aaKnown RBP25.57■■□□□ 1.68
LRRC28-210ENST00000558879 MSH6P52701 1360 aa25.56■■□□□ 1.68
LRRC28-210ENST00000558879 RBM33Q96EV2 1170 aaKnown RBP25.55■■□□□ 1.68
LRRC28-210ENST00000558879 PHLPP1O60346 1717 aa25.54■■□□□ 1.68
LRRC28-210ENST00000558879 NALCNQ8IZF0 1738 aa25.54■■□□□ 1.68
LRRC28-210ENST00000558879 ZNF326Q5BKZ1 582 aaKnown RBP25.53■■□□□ 1.68
LRRC28-210ENST00000558879 SETD5Q9C0A6 1442 aa25.5■■□□□ 1.67
LRRC28-210ENST00000558879 METP08581 1390 aa25.49■■□□□ 1.67
LRRC28-210ENST00000558879 ILDR2Q71H61 639 aa25.49■■□□□ 1.67
LRRC28-210ENST00000558879 COL16A1Q07092 1604 aaPredicted RBP25.48■■□□□ 1.67
LRRC28-210ENST00000558879 CCDC144AA2RUR9 1427 aa25.47■■□□□ 1.67
LRRC28-210ENST00000558879 DCCP43146 1447 aa25.47■■□□□ 1.67
LRRC28-210ENST00000558879 PRAG1Q86YV5 1406 aa25.47■■□□□ 1.67
LRRC28-210ENST00000558879 SPATA31E1Q6ZUB1 1445 aa25.46■■□□□ 1.67
LRRC28-210ENST00000558879 AMOTL2Q9Y2J4 779 aa25.46■■□□□ 1.67
LRRC28-210ENST00000558879 FOXD1Q16676 465 aa25.45■■□□□ 1.66
LRRC28-210ENST00000558879 RPGRIP1LQ68CZ1 1315 aa25.44■■□□□ 1.66
LRRC28-210ENST00000558879 ACIN1Q9UKV3 1341 aaKnown RBP25.44■■□□□ 1.66
LRRC28-210ENST00000558879 MPHOSPH9Q99550 1183 aa25.44■■□□□ 1.66
LRRC28-210ENST00000558879 AHDC1Q5TGY3 1603 aaPredicted RBP25.44■■□□□ 1.66
LRRC28-210ENST00000558879 PTCH1Q13635 1447 aa25.42■■□□□ 1.66
LRRC28-210ENST00000558879 KNDC1Q76NI1 1749 aa25.42■■□□□ 1.66
LRRC28-210ENST00000558879 RAB3GAP2Q9H2M9 1393 aa25.41■■□□□ 1.66
LRRC28-210ENST00000558879 NHSL1Q5SYE7 1610 aa25.41■■□□□ 1.66
LRRC28-210ENST00000558879 SLAIN2Q9P270 581 aa25.4■■□□□ 1.66
LRRC28-210ENST00000558879 ADGRL3Q9HAR2 1447 aa25.39■■□□□ 1.66
LRRC28-210ENST00000558879 VGFO15240 615 aaPredicted RBP25.39■■□□□ 1.66
LRRC28-210ENST00000558879 C19orf44Q9H6X5 657 aa25.38■■□□□ 1.65
LRRC28-210ENST00000558879 SHPRHQ149N8 1683 aa25.38■■□□□ 1.65
LRRC28-210ENST00000558879 CADPS2Q86UW7 1296 aa25.36■■□□□ 1.65
LRRC28-210ENST00000558879 ASXL1Q8IXJ9 1541 aa25.36■■□□□ 1.65
LRRC28-210ENST00000558879 LAMC1P11047 1609 aa25.35■■□□□ 1.65
LRRC28-210ENST00000558879 MST1RQ04912 1400 aa25.35■■□□□ 1.65
LRRC28-210ENST00000558879 C14orf37Q86TY3 774 aa25.34■■□□□ 1.65
LRRC28-210ENST00000558879 ANKRD30BQ9BXX2 1392 aa25.32■■□□□ 1.64
LRRC28-210ENST00000558879 PIK3C2GO75747 1445 aa25.31■■□□□ 1.64
LRRC28-210ENST00000558879 MYOM2P54296 1465 aa25.3■■□□□ 1.64
LRRC28-210ENST00000558879 ATF3P18847 181 aa25.3■■□□□ 1.64
LRRC28-210ENST00000558879 NRXN1Q9ULB1 1477 aa25.29■■□□□ 1.64
LRRC28-210ENST00000558879 ROBO2Q9HCK4 1378 aa25.29■■□□□ 1.64
LRRC28-210ENST00000558879 CDC42BPGQ6DT37 1551 aa25.28■■□□□ 1.64
LRRC28-210ENST00000558879 ADGRF5Q8IZF2 1346 aa25.28■■□□□ 1.64
LRRC28-210ENST00000558879 TECPR2O15040 1411 aa25.28■■□□□ 1.64
LRRC28-210ENST00000558879 SOCS7O14512 581 aa25.27■■□□□ 1.64
LRRC28-210ENST00000558879 JCADQ9P266 1359 aa25.26■■□□□ 1.63
LRRC28-210ENST00000558879 BRINP3Q76B58 766 aa25.24■■□□□ 1.63
LRRC28-210ENST00000558879 RGL3Q3MIN7 710 aa25.22■■□□□ 1.63
LRRC28-210ENST00000558879 PHF23Q9BUL5 403 aaPredicted RBP25.22■■□□□ 1.63
LRRC28-210ENST00000558879 LRP6O75581 1613 aa25.2■■□□□ 1.62
LRRC28-210ENST00000558879 HRCP23327 699 aa25.2■■□□□ 1.62
LRRC28-210ENST00000558879 C1orf167Q5SNV9 1468 aa25.2■■□□□ 1.62
LRRC28-210ENST00000558879 FMN2Q9NZ56 1722 aa25.19■■□□□ 1.62
LRRC28-210ENST00000558879 LRPPRCP42704 1394 aaKnown RBP25.18■■□□□ 1.62
LRRC28-210ENST00000558879 RGS17Q9UGC6 210 aaPredicted RBP25.16■■□□□ 1.62
LRRC28-210ENST00000558879 YTHDC2Q9H6S0 1430 aaKnown RBP25.14■■□□□ 1.62
LRRC28-210ENST00000558879 ABCC11Q96J66 1382 aa25.14■■□□□ 1.61
LRRC28-210ENST00000558879 SPATA31A6Q5VVP1 1343 aa25.12■■□□□ 1.61
LRRC28-210ENST00000558879 ADGRB1O14514 1584 aa25.12■■□□□ 1.61
LRRC28-210ENST00000558879 RGPD8O14715 1765 aaPredicted RBP25.12■■□□□ 1.61
LRRC28-210ENST00000558879 DLC1Q96QB1 1528 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms