RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 HRCP23327 699 aa18.53■□□□□ 0.56
SLIRP-209ENST00000557342 RIMS2Q9UQ26 1411 aa18.53■□□□□ 0.56
SLIRP-209ENST00000557342 ZFYVE9O95405 1425 aa18.52■□□□□ 0.56
SLIRP-209ENST00000557342 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.52■□□□□ 0.56
SLIRP-209ENST00000557342 IQSEC2Q5JU85 1478 aa18.5■□□□□ 0.55
SLIRP-209ENST00000557342 CPS1P31327 1500 aa18.49■□□□□ 0.55
SLIRP-209ENST00000557342 PPP1R15AO75807 674 aaPredicted RBP18.49■□□□□ 0.55
SLIRP-209ENST00000557342 PLEKHG1Q9ULL1 1385 aa18.47■□□□□ 0.55
SLIRP-209ENST00000557342 FBXO41Q8TF61 875 aa18.47■□□□□ 0.55
SLIRP-209ENST00000557342 STRCP1A6NGW2 1772 aa18.46■□□□□ 0.55
SLIRP-209ENST00000557342 FOXD1Q16676 465 aa18.46■□□□□ 0.55
SLIRP-209ENST00000557342 ZNF326Q5BKZ1 582 aaKnown RBP18.46■□□□□ 0.55
SLIRP-209ENST00000557342 BCANQ96GW7 911 aa18.46■□□□□ 0.55
SLIRP-209ENST00000557342 CCDC144AA2RUR9 1427 aa18.46■□□□□ 0.55
SLIRP-209ENST00000557342 NEXMIFQ5QGS0 1516 aa18.43■□□□□ 0.54
SLIRP-209ENST00000557342 DIP2AQ14689 1571 aa18.42■□□□□ 0.54
SLIRP-209ENST00000557342 PPLO60437 1756 aa18.41■□□□□ 0.54
SLIRP-209ENST00000557342 NUTM2DQ5VT03 806 aaPredicted RBP18.41■□□□□ 0.54
SLIRP-209ENST00000557342 SLC26A8Q96RN1 970 aa18.41■□□□□ 0.54
SLIRP-209ENST00000557342 CHD2O14647 1828 aaKnown RBP18.41■□□□□ 0.54
SLIRP-209ENST00000557342 RPGRIP1LQ68CZ1 1315 aa18.4■□□□□ 0.54
SLIRP-209ENST00000557342 TBX22Q9Y458 520 aa18.39■□□□□ 0.53
SLIRP-209ENST00000557342 NWD1Q149M9 1564 aa18.38■□□□□ 0.53
SLIRP-209ENST00000557342 SETBP1Q9Y6X0 1596 aa18.38■□□□□ 0.53
SLIRP-209ENST00000557342 KCNA6P17658 529 aa18.37■□□□□ 0.53
SLIRP-209ENST00000557342 ADAMTS13Q76LX8 1427 aa18.37■□□□□ 0.53
SLIRP-209ENST00000557342 VGFO15240 615 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-209ENST00000557342 TRIM26Q12899 539 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-209ENST00000557342 LRRC7Q96NW7 1537 aa18.36■□□□□ 0.53
SLIRP-209ENST00000557342 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
SLIRP-209ENST00000557342 IFT172Q9UG01 1749 aa18.36■□□□□ 0.53
SLIRP-209ENST00000557342 NRXN3Q9Y4C0 1643 aa18.36■□□□□ 0.53
SLIRP-209ENST00000557342 PIK3R4Q99570 1358 aa18.35■□□□□ 0.53
SLIRP-209ENST00000557342 XIRP1Q702N8 1843 aaKnown RBP18.35■□□□□ 0.53
SLIRP-209ENST00000557342 NKTRP30414 1462 aaKnown RBP18.34■□□□□ 0.53
SLIRP-209ENST00000557342 SPATA31E1Q6ZUB1 1445 aa18.34■□□□□ 0.53
SLIRP-209ENST00000557342 ANKRD30BQ9BXX2 1392 aa18.33■□□□□ 0.53
SLIRP-209ENST00000557342 RGL3Q3MIN7 710 aa18.32■□□□□ 0.52
SLIRP-209ENST00000557342 UBAP1LF5GYI3 381 aa18.3■□□□□ 0.52
SLIRP-209ENST00000557342 TOM1O60784 492 aa18.29■□□□□ 0.52
SLIRP-209ENST00000557342 PROSER2Q86WR7 435 aaPredicted RBP18.29■□□□□ 0.52
SLIRP-209ENST00000557342 SETD1AO15047 1707 aaKnown RBP18.29■□□□□ 0.52
SLIRP-209ENST00000557342 ALKQ9UM73 1620 aa18.27■□□□□ 0.51
SLIRP-209ENST00000557342 XRN1Q8IZH2 1706 aaKnown RBP18.26■□□□□ 0.51
SLIRP-209ENST00000557342 TMEM94Q12767 1356 aa18.26■□□□□ 0.51
SLIRP-209ENST00000557342 AMOTL2Q9Y2J4 779 aa18.24■□□□□ 0.51
SLIRP-209ENST00000557342 PTPRUQ92729 1446 aa18.23■□□□□ 0.51
SLIRP-209ENST00000557342 NCOA3Q9Y6Q9 1424 aa18.23■□□□□ 0.51
SLIRP-209ENST00000557342 MYOM2P54296 1465 aa18.23■□□□□ 0.51
SLIRP-209ENST00000557342 METP08581 1390 aa18.23■□□□□ 0.51
SLIRP-209ENST00000557342 ADGRF5Q8IZF2 1346 aa18.23■□□□□ 0.51
SLIRP-209ENST00000557342 LAMC1P11047 1609 aa18.21■□□□□ 0.51
SLIRP-209ENST00000557342 MSH6P52701 1360 aa18.2■□□□□ 0.5
SLIRP-209ENST00000557342 PIK3C2GO75747 1445 aa18.2■□□□□ 0.5
SLIRP-209ENST00000557342 STAC3Q96MF2 364 aa18.19■□□□□ 0.5
SLIRP-209ENST00000557342 NRXN1Q9ULB1 1477 aa18.19■□□□□ 0.5
SLIRP-209ENST00000557342 PIP4K2BP78356 416 aa18.18■□□□□ 0.5
SLIRP-209ENST00000557342 RBM33Q96EV2 1170 aaKnown RBP18.18■□□□□ 0.5
SLIRP-209ENST00000557342 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
SLIRP-209ENST00000557342 C14orf37Q86TY3 774 aa18.17■□□□□ 0.5
SLIRP-209ENST00000557342 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.17■□□□□ 0.5
SLIRP-209ENST00000557342 PTCH1Q13635 1447 aa18.15■□□□□ 0.5
SLIRP-209ENST00000557342 PRAG1Q86YV5 1406 aa18.15■□□□□ 0.5
SLIRP-209ENST00000557342 KNDC1Q76NI1 1749 aa18.15■□□□□ 0.5
SLIRP-209ENST00000557342 DHX57Q6P158 1386 aaKnown RBP18.15■□□□□ 0.5
SLIRP-209ENST00000557342 DCAF11Q8TEB1 546 aa18.14■□□□□ 0.49
SLIRP-209ENST00000557342 C19orf44Q9H6X5 657 aa18.14■□□□□ 0.49
SLIRP-209ENST00000557342 C14orf93Q9H972 538 aaKnown RBP18.13■□□□□ 0.49
SLIRP-209ENST00000557342 KDM2AQ9Y2K7 1162 aa18.12■□□□□ 0.49
SLIRP-209ENST00000557342 NALCNQ8IZF0 1738 aa18.12■□□□□ 0.49
SLIRP-209ENST00000557342 CADPS2Q86UW7 1296 aa18.11■□□□□ 0.49
SLIRP-209ENST00000557342 DCCP43146 1447 aa18.11■□□□□ 0.49
SLIRP-209ENST00000557342 ASXL1Q8IXJ9 1541 aa18.11■□□□□ 0.49
SLIRP-209ENST00000557342 LRPPRCP42704 1394 aaKnown RBP18.1■□□□□ 0.49
SLIRP-209ENST00000557342 ATF3P18847 181 aa18.1■□□□□ 0.49
SLIRP-209ENST00000557342 ROBO1Q9Y6N7 1651 aa18.09■□□□□ 0.49
SLIRP-209ENST00000557342 FAM135BQ49AJ0 1406 aa18.09■□□□□ 0.49
SLIRP-209ENST00000557342 ADGRL3Q9HAR2 1447 aa18.09■□□□□ 0.49
SLIRP-209ENST00000557342 ROBO2Q9HCK4 1378 aa18.09■□□□□ 0.49
SLIRP-209ENST00000557342 CFAP70Q5T0N1 1121 aa18.09■□□□□ 0.49
SLIRP-209ENST00000557342 TECPR2O15040 1411 aa18.08■□□□□ 0.49
SLIRP-209ENST00000557342 YTHDC2Q9H6S0 1430 aaKnown RBP18.08■□□□□ 0.49
SLIRP-209ENST00000557342 ABCC11Q96J66 1382 aa18.08■□□□□ 0.49
SLIRP-209ENST00000557342 TMEM132EQ6IEE7 984 aa18.08■□□□□ 0.48
SLIRP-209ENST00000557342 SLAIN2Q9P270 581 aa18.08■□□□□ 0.48
SLIRP-209ENST00000557342 KIAA1210Q9ULL0 1709 aa18.07■□□□□ 0.48
SLIRP-209ENST00000557342 STK26Q9P289 416 aa18.07■□□□□ 0.48
SLIRP-209ENST00000557342 HSPA1LP34931 641 aa18.05■□□□□ 0.48
SLIRP-209ENST00000557342 SIN3AQ96ST3 1273 aa18.05■□□□□ 0.48
SLIRP-209ENST00000557342 NEUROD1Q13562 356 aa18.04■□□□□ 0.48
SLIRP-209ENST00000557342 SIRT1Q96EB6 747 aa18.04■□□□□ 0.48
SLIRP-209ENST00000557342 ADGRB1O14514 1584 aa18.04■□□□□ 0.48
SLIRP-209ENST00000557342 PCGF6Q9BYE7 350 aa18.03■□□□□ 0.48
SLIRP-209ENST00000557342 DLC1Q96QB1 1528 aa18.03■□□□□ 0.48
SLIRP-209ENST00000557342 PHLPP1O60346 1717 aa18.01■□□□□ 0.47
SLIRP-209ENST00000557342 CDC42BPGQ6DT37 1551 aa18■□□□□ 0.47
SLIRP-209ENST00000557342 MST1RQ04912 1400 aa18■□□□□ 0.47
SLIRP-209ENST00000557342 L3MBTL2Q969R5 705 aa18■□□□□ 0.47
SLIRP-209ENST00000557342 WAPLQ7Z5K2 1190 aa17.99■□□□□ 0.47
SLIRP-209ENST00000557342 ILDR2Q71H61 639 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms